Mercurial > repos > jjohnson > krona_tools

diff tool_dependencies.xml @ 8:44673f6f1f6d draft default tip

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Set --prefix for install
author Jim Johnson <jj@umn.edu>
date Tue, 30 Oct 2012 12:41:10 -0500
parents de6dceb65136
children
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--- a/tool_dependencies.xml	Tue Oct 30 12:38:17 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 30 12:41:10 2012 -0500
@@ -14,7 +14,7 @@
                 <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl \-\-prefix $INSTALL_DIR \-\-taxonomy $INSTALL_DIR/taxonomy</action>
                 -->
                 <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ -->
-                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl </action>
+                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR</action>
                 <!-- Down load and process NCBI Taxonomy data, the  updateTaxonomy.sh script relies on the curl command -->
                 <action type="shell_command">cd $INSTALL_DIR &amp;&amp; if curl --help 2>i1 > /dev/null; then ./updateTaxonomy.sh; fi</action>
                 <!-- copy javascript to galaxy/static/krona/