# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1349460523 18000
# Node ID 74391fc6e3f2a688f1192518eed60dbc6ef2ae3d
# Parent  10e3476429b59daf85d82f6cc117c40fee97bcef
Add package requirement

diff -r 10e3476429b5 -r 74391fc6e3f2 gmap.xml
--- a/gmap.xml	Fri Oct 05 13:51:49 2012 -0400
+++ b/gmap.xml	Fri Oct 05 13:08:43 2012 -0500
@@ -1,7 +1,7 @@
 <tool id="gmap" name="GMAP" version="2.0.1">
   <description>Genomic Mapping and Alignment Program for mRNA and EST sequences</description>
   <requirements>
-    <requirement type="binary">gmap</requirement>
+    <requirement type="package" version="2011-11-30">gmap</requirement>
   </requirements>
   <version_string>gmap --version</version_string>
   <command>
diff -r 10e3476429b5 -r 74391fc6e3f2 gmap_build.xml
--- a/gmap_build.xml	Fri Oct 05 13:51:49 2012 -0400
+++ b/gmap_build.xml	Fri Oct 05 13:08:43 2012 -0500
@@ -1,7 +1,7 @@
 <tool id="gmap_build" name="GMAP Build" version="2.0.0">
   <description>a database genome index for GMAP and GSNAP</description>
   <requirements>
-      <requirement type="binary">gmap_build</requirement>
+      <requirement type="package" version="2011-11-30">gmap</requirement>
   </requirements>
   <version_string>gmap --version</version_string>
   <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command>
diff -r 10e3476429b5 -r 74391fc6e3f2 gsnap.xml
--- a/gsnap.xml	Fri Oct 05 13:51:49 2012 -0400
+++ b/gsnap.xml	Fri Oct 05 13:08:43 2012 -0500
@@ -1,7 +1,7 @@
 <tool id="gsnap" name="GSNAP" version="2.0.1">
   <description>Genomic Short-read Nucleotide Alignment Program</description>
   <requirements>
-      <requirement type="binary">gsnap</requirement>
+      <requirement type="package" version="2011-11-30">gmap</requirement>
   </requirements>
   <version_string>gsnap --version</version_string>
   <command>
diff -r 10e3476429b5 -r 74391fc6e3f2 iit_store.xml
--- a/iit_store.xml	Fri Oct 05 13:51:49 2012 -0400
+++ b/iit_store.xml	Fri Oct 05 13:08:43 2012 -0500
@@ -1,7 +1,7 @@
 <tool id="gmap_iit_store" name="GMAP IIT" version="2.0.0">
   <description>Create a map store for known genes or SNPs</description>
   <requirements>
-      <requirement type="binary">iit_store</requirement>
+      <requirement type="package" version="2011-11-30">gmap</requirement>
   </requirements>
   <version_string>iit_store --version</version_string>
   <command interpreter="command"> /bin/bash $shscript 2> $log </command>
diff -r 10e3476429b5 -r 74391fc6e3f2 snpindex.xml
--- a/snpindex.xml	Fri Oct 05 13:51:49 2012 -0400
+++ b/snpindex.xml	Fri Oct 05 13:08:43 2012 -0500
@@ -1,7 +1,7 @@
 <tool id="gmap_snpindex" name="GMAP SNP Index" version="2.0.0">
   <description>build index files for known SNPs</description>
   <requirements>
-      <requirement type="binary">snpindex</requirement>
+      <requirement type="package" version="2011-11-30">gmap</requirement>
   </requirements>
   <version_string>snpindex --version</version_string>
   <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command>