diff tool_dependencies.xml @ 2:f6ba0f12cca2 draft

Untested work-in-progress GMAP wrappers v3.0.0, from JJ back in June 2013

--- a/tool_dependencies.xml	Fri Oct 05 13:08:43 2012 -0500
+++ b/tool_dependencies.xml	Wed Sep 28 10:43:44 2016 -0400
@@ -1,21 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="gmap" version="2011-11-30">
-        <install version="1.0">
-            <actions>
-                <action type="shell_command">wget http://research-pub.gene.com/gmap/src/gmap-gsnap-2011-11-30.tar.gz</action>
-                <action type="shell_command"> ./configure --prefix=bin --with-gmapdb=../gmapdb</action>
-                <action type="shell_command">make</action>
-                <action type="move_directory_files">
-                    <source_directory>bin</source_directory>
-                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
+    <package name="gmap" version="2013-05-09">
+        <repository changeset_revision="8bacc25e2023" name="package_gmap_2013_05_09" owner="jjohnson" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>