Mercurial > repos > jjohnson > gmap

diff tool_dependencies.xml @ 0:10e3476429b5 draft

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author jjohnson
date Fri, 05 Oct 2012 13:51:49 -0400
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children f6ba0f12cca2
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Oct 05 13:51:49 2012 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="gmap" version="2011-11-30">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">wget http://research-pub.gene.com/gmap/src/gmap-gsnap-2011-11-30.tar.gz</action>
+                <action type="shell_command"> ./configure --prefix=bin --with-gmapdb=../gmapdb</action>
+                <action type="shell_command">make</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>