comparison tool_dependencies.xml @ 2:f6ba0f12cca2 draft

Untested work-in-progress GMAP wrappers v3.0.0, from JJ back in June 2013

1:74391fc6e3f2

<?xml version="1.0"?>
<tool_dependency>
    <package name="gmap" version="2011-11-30">
        <install version="1.0">
            <actions>
                <action type="shell_command">wget http://research-pub.gene.com/gmap/src/gmap-gsnap-2011-11-30.tar.gz</action>
                <action type="shell_command"> ./configure --prefix=bin --with-gmapdb=../gmapdb</action>
                <action type="shell_command">make</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>

2:f6ba0f12cca2

<?xml version="1.0"?>
<tool_dependency>
    <package name="gmap" version="2013-05-09">
        <repository changeset_revision="8bacc25e2023" name="package_gmap_2013_05_09" owner="jjohnson" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>