Mercurial > repos > jjohnson > gmap
comparison snpindex.xml @ 2:f6ba0f12cca2 draft
Untested work-in-progress GMAP wrappers v3.0.0, from JJ back in June 2013
| author | peterjc |
|---|---|
| date | Wed, 28 Sep 2016 10:43:44 -0400 |
| parents | 74391fc6e3f2 |
| children | 488e9d642566 |
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| 1:74391fc6e3f2 | 2:f6ba0f12cca2 |
|---|---|
| 1 <tool id="gmap_snpindex" name="GMAP SNP Index" version="2.0.0"> | 1 <tool id="gmap_snpindex" name="GMAP SNP Index" version="3.0.0"> |
| 2 <description>build index files for known SNPs</description> | 2 <description>build index files for known SNPs</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2011-11-30">gmap</requirement> | 4 <requirement type="package" version="2013-05-09">gmap</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <version_string>snpindex --version</version_string> | 6 <version_string>snpindex --version</version_string> |
| 7 <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command> | 7 <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command> |
| 8 <inputs> | 8 <inputs> |
| 9 <conditional name="refGenomeSource"> | 9 <conditional name="refGenomeSource"> |