view create_gffdb.xml @ 0:8ba71aead5bc draft

planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit 186424e18ed21f2aea293fa7c4b654a9a4fb5d8c-dirty

<tool id="create_gffdb" name="Create GFF DB for GTF or GFF3" version="0.1.0">
    <description>gffutils sqlite db</description>
    <requirements>
        <requirement type="package">gffutils</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python '$__tool_directory__/create_gffdb.py' '$input' '$output'
    ]]></command>
    <inputs>
        <param name="input" type="data" format="gtf,gff3" label="GTF or GFF3 Annotation"/>
    </inputs>
    <outputs>
        <data name="output" format="sqlite" label="${tool.name} ${input.name}.sqlite" />
    </outputs>
    <tests>
        <test>
            <param name="input" ftype="gtf" value="GRCm38.gtf"/>
            <output name="output" file="GRCm38.gtf.sqlite" ftype="sqlite" compare="sim_size" delta="5000" />
        </test>
        <test>
            <param name="input" ftype="gff3" value="GRCm38.gff3"/>
            <output name="output" file="GRCm38.gff3.sqlite" ftype="sqlite" compare="sim_size" delta="5000" />
        </test>
    </tests>
    <help><![CDATA[
    ]]></help>
</tool>