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Tue, 19 Feb 2013 20:59:51 -0600 Jim Johnson Temporarily use my own copy of samtools until cross dependency support is in release draft
Mon, 18 Feb 2013 15:48:46 -0600 Jim Johnson Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values draft
Mon, 18 Feb 2013 11:17:32 -0600 Jim Johnson Use repository dependency for samtools with corrected revision draft
Mon, 18 Feb 2013 11:13:47 -0600 Jim Johnson Use repository dependency for samtools (from main toolshed) draft
Mon, 18 Feb 2013 11:01:18 -0600 Jim Johnson Use repository dependency for samtools draft
Fri, 28 Dec 2012 14:15:14 -0600 Jim Johnson Add BQSR and plot_pdf_file options to base_recalibrator.xml draft
Fri, 28 Dec 2012 12:34:05 -0600 Jim Johnson Replace covariate DinucCovariate with ContextCovariate draft
Fri, 28 Dec 2012 12:08:47 -0600 Jim Johnson Remove thread options from base_recalibrator.xml draft
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