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age author description
Thu, 28 Feb 2013 15:32:04 -0600 Jim Johnson Omit --read_filter param included by default draft
Thu, 28 Feb 2013 12:45:44 -0600 Jim Johnson unified_genotyper - add sample_poidy param draft
Thu, 28 Feb 2013 12:44:55 -0600 Jim Johnson variant_recalibrator Omit --read_filter for MalformedReadFilter since it included by default, allows --filter_mismatching_base_and_quals to be set draft
Tue, 19 Feb 2013 21:04:33 -0600 Jim Johnson Temporarily use my own copy of samtools - correct name draft
Tue, 19 Feb 2013 20:59:51 -0600 Jim Johnson Temporarily use my own copy of samtools until cross dependency support is in release draft
Mon, 18 Feb 2013 15:48:46 -0600 Jim Johnson Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values draft
Mon, 18 Feb 2013 11:17:32 -0600 Jim Johnson Use repository dependency for samtools with corrected revision draft
Mon, 18 Feb 2013 11:13:47 -0600 Jim Johnson Use repository dependency for samtools (from main toolshed) draft
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