| Fri, 01 Mar 2013 08:07:56 -0600 |
Jim Johnson |
Fix commandline template
draft
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| Fri, 01 Mar 2013 07:52:02 -0600 |
Jim Johnson |
Fix default read filter screening
draft
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| Thu, 28 Feb 2013 15:41:24 -0600 |
Jim Johnson |
Update tool version to 0.0.7
draft
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| Thu, 28 Feb 2013 15:32:04 -0600 |
Jim Johnson |
Omit --read_filter param included by default
draft
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| Thu, 28 Feb 2013 12:45:44 -0600 |
Jim Johnson |
unified_genotyper - add sample_poidy param
draft
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| Thu, 28 Feb 2013 12:44:55 -0600 |
Jim Johnson |
variant_recalibrator Omit --read_filter for MalformedReadFilter since it included by default, allows --filter_mismatching_base_and_quals to be set
draft
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| Tue, 19 Feb 2013 21:04:33 -0600 |
Jim Johnson |
Temporarily use my own copy of samtools - correct name
draft
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| Tue, 19 Feb 2013 20:59:51 -0600 |
Jim Johnson |
Temporarily use my own copy of samtools until cross dependency support is in release
draft
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| Mon, 18 Feb 2013 15:48:46 -0600 |
Jim Johnson |
Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values
draft
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| Mon, 18 Feb 2013 11:17:32 -0600 |
Jim Johnson |
Use repository dependency for samtools with corrected revision
draft
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| Mon, 18 Feb 2013 11:13:47 -0600 |
Jim Johnson |
Use repository dependency for samtools (from main toolshed)
draft
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| Mon, 18 Feb 2013 11:01:18 -0600 |
Jim Johnson |
Use repository dependency for samtools
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| Fri, 28 Dec 2012 14:15:14 -0600 |
Jim Johnson |
Add BQSR and plot_pdf_file options to base_recalibrator.xml
draft
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| Fri, 28 Dec 2012 12:34:05 -0600 |
Jim Johnson |
Replace covariate DinucCovariate with ContextCovariate
draft
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| Fri, 28 Dec 2012 12:08:47 -0600 |
Jim Johnson |
Remove thread options from base_recalibrator.xml
draft
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| Fri, 28 Dec 2012 11:50:20 -0600 |
Jim Johnson |
Fix base_recalibrator.xml option: no_standard_covs
draft
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