Mercurial > repos > jjohnson > gatk2
changeset 39:fab099dde911 draft default tip
VariantFiltration should not have -nt option since it does not implemnt TreeReducible
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 05 Mar 2013 11:15:13 -0600 |
| parents | 1061731ba6ed |
| children | |
| files | variant_filtration.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/variant_filtration.xml Mon Mar 04 21:37:30 2013 -0600 +++ b/variant_filtration.xml Tue Mar 05 11:15:13 2013 -0600 @@ -12,7 +12,7 @@ -jar "\$GATK2_PATH/GenomeAnalysisTK.jar" -T "VariantFiltration" \$GATK2_SITE_OPTIONS - \$GATK2_NUM_THREADS + ## \$GATK2_NUM_THREADS ##--num_threads 4 ##hard coded, for now ##-et "NO_ET" -K "\$GATK2_BASE/gatk2_key_file" ##ET no phone home -o "${output_vcf}"