# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1351796440 18000
# Node ID a65944bad5c1767aca198b781bab5be740e3d37b
# Parent  9b8e2a158073549275634f63fb27c5202e816b1c
tool_dependencies.xml - fix move_file and add symlink

diff -r 9b8e2a158073 -r a65944bad5c1 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Nov 01 13:44:41 2012 -0500
+++ b/tool_dependencies.xml	Thu Nov 01 14:00:40 2012 -0500
@@ -10,8 +10,9 @@
                  -->
                 <action type="move_file">
                     <source>GenomeAnalysisTKLite-2.2-2-gd3f5a5e/GenomeAnalysisTKLite.jar</source>
-                    <destination>$INSTALL_DIR/GenomeAnalysisTK.jar</destination>
+                    <destination>$INSTALL_DIR</destination>
                 </action>
+                <action type="shell_command">ln -s $INSTALL_DIR/GenomeAnalysisTKLite.jar GenomeAnalysisTK.jar</action>
                 <action type="set_environment">
                     <environment_variable name="GATK2_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>