# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1351798206 18000
# Node ID 5b2009fcf2ad869bdf02a344598256b6744b55ea
# Parent  0edf813146d822733c45f2083169723e783784f3
tool_dependencies.xml - fix set_environment

diff -r 0edf813146d8 -r 5b2009fcf2ad tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Nov 01 14:19:38 2012 -0500
+++ b/tool_dependencies.xml	Thu Nov 01 14:30:06 2012 -0500
@@ -19,8 +19,6 @@
                 </action>
                 <action type="set_environment">
                     <environment_variable name="GATK2_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="set_environment">
                     <environment_variable name="GATK2_SITE_OPTIONS" action="set_to">--num_threads 4 --num_cpu_threads_per_data_thread 3 --phone_home STANDARD</environment_variable>
                 </action>
             </actions>