# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1361206878 21600
# Node ID 09e6427d3e6a22a3174bdca7f1a7b6396ab023e2
# Parent  6460f2ba6a60f4607377730b96d56f782078bc13
Use repository dependency for samtools

diff -r 6460f2ba6a60 -r 09e6427d3e6a tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Dec 28 14:15:14 2012 -0600
+++ b/tool_dependencies.xml	Mon Feb 18 11:01:18 2013 -0600
@@ -45,26 +45,6 @@
         </readme>
     </package>
     <package name="samtools" version="0.1.18">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
-                <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/g' Makefile</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>samtools</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>misc/maq2sam-long</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-Compiling SAMtools requires the ncurses and zlib development libraries.
-        </readme>
+        <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_samtools_0_1_18" owner="devteam" changeset_revision="a7936f4ea405" />
     </package>
 </tool_dependency>