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log variant_recalibrator.xml @ 31:a5c55503d196 draft

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Thu, 28 Feb 2013 12:44:55 -0600 Jim Johnson variant_recalibrator Omit --read_filter for MalformedReadFilter since it included by default, allows --filter_mismatching_base_and_quals to be set draft
Mon, 18 Feb 2013 15:48:46 -0600 Jim Johnson Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values draft
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