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log base_recalibrator.xml @ 28:6ef8eb568700 draft

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Mon, 18 Feb 2013 15:48:46 -0600 Jim Johnson Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values draft
Fri, 28 Dec 2012 14:15:14 -0600 Jim Johnson Add BQSR and plot_pdf_file options to base_recalibrator.xml draft
Fri, 28 Dec 2012 12:34:05 -0600 Jim Johnson Replace covariate DinucCovariate with ContextCovariate draft
Fri, 28 Dec 2012 12:08:47 -0600 Jim Johnson Remove thread options from base_recalibrator.xml draft
Fri, 28 Dec 2012 11:50:20 -0600 Jim Johnson Fix base_recalibrator.xml option: no_standard_covs draft
Thu, 20 Dec 2012 11:01:55 -0600 Jim Johnson Update tool_dependencies to GATK v 2.3 draft
Thu, 15 Nov 2012 10:18:27 -0600 Jim Johnson base_recalibrator out_puts gatk_report draft
Thu, 01 Nov 2012 13:53:22 -0400 jjohnson Uploaded draft
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