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log base_recalibrator.xml @ 28:6ef8eb568700 draft

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Mon, 18 Feb 2013 15:48:46 -0600 Jim Johnson Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values draft
Fri, 28 Dec 2012 14:15:14 -0600 Jim Johnson Add BQSR and plot_pdf_file options to base_recalibrator.xml draft
Fri, 28 Dec 2012 12:34:05 -0600 Jim Johnson Replace covariate DinucCovariate with ContextCovariate draft
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