Mercurial > repos > jjohnson > gatk2
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variant_recalibrator Omit --read_filter for MalformedReadFilter since it included by default, allows --filter_mismatching_base_and_quals to be set draftThu, 28 Feb 2013 12:44:55 -0600, by Jim Johnson
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Temporarily use my own copy of samtools - correct name draftTue, 19 Feb 2013 21:04:33 -0600, by Jim Johnson