gatk2: revision graph

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Temporarily use my own copy of samtools - correct name draft
Tue, 19 Feb 2013 21:04:33 -0600, by Jim Johnson
Temporarily use my own copy of samtools until cross dependency support is in release draft
Tue, 19 Feb 2013 20:59:51 -0600, by Jim Johnson
Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values draft
Mon, 18 Feb 2013 15:48:46 -0600, by Jim Johnson
Use repository dependency for samtools with corrected revision draft
Mon, 18 Feb 2013 11:17:32 -0600, by Jim Johnson

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