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diff tool_dependencies.xml @ 4:5b2009fcf2ad draft

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tool_dependencies.xml - fix set_environment
author Jim Johnson <jj@umn.edu>
date Thu, 01 Nov 2012 14:30:06 -0500
parents 0edf813146d8
children 0ed800373b59
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 01 14:19:38 2012 -0500
+++ b/tool_dependencies.xml	Thu Nov 01 14:30:06 2012 -0500
@@ -19,8 +19,6 @@
                 </action>
                 <action type="set_environment">
                     <environment_variable name="GATK2_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="set_environment">
                     <environment_variable name="GATK2_SITE_OPTIONS" action="set_to">--num_threads 4 --num_cpu_threads_per_data_thread 3 --phone_home STANDARD</environment_variable>
                 </action>
             </actions>