Mercurial > repos > jjohnson > gatk2

diff base_recalibrator.xml @ 23:2f9bf8bf42b7 draft

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Replace covariate DinucCovariate with ContextCovariate
author Jim Johnson <jj@umn.edu>
date Fri, 28 Dec 2012 12:34:05 -0600
parents bc18c5ad280f
children 6460f2ba6a60
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--- a/base_recalibrator.xml	Fri Dec 28 12:08:47 2012 -0600
+++ b/base_recalibrator.xml	Fri Dec 28 12:34:05 2012 -0600
@@ -173,7 +173,7 @@
       <option value="ReadGroupCovariate" />
       <option value="QualityScoreCovariate" />
       <option value="CycleCovariate" />
-      <option value="DinucCovariate" />
+      <option value="ContextCovariate" />
       <!-- covariates below were pulled from list option -->
       <option value="HomopolymerCovariate" />
       <option value="GCContentCovariate" />