Mercurial > repos > jjohnson > gatk2
comparison base_recalibrator.xml @ 16:d56503a12975 draft
base_recalibrator out_puts gatk_report
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 15 Nov 2012 10:18:27 -0600 |
| parents | 74c05070a3f8 |
| children | 7533db8dfb5b |
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| 15:35c6289faeff | 16:d56503a12975 |
|---|---|
| 495 <param name="homopolymer_nback" type="integer" value="7" label="number of previous bases to look at in HomopolymerCovariate" help="-nback,--homopolymer_nback &lt;homopolymer_nback&gt;" /> | 495 <param name="homopolymer_nback" type="integer" value="7" label="number of previous bases to look at in HomopolymerCovariate" help="-nback,--homopolymer_nback &lt;homopolymer_nback&gt;" /> |
| 496 </when> | 496 </when> |
| 497 </conditional> | 497 </conditional> |
| 498 </inputs> | 498 </inputs> |
| 499 <outputs> | 499 <outputs> |
| 500 <data format="csv" name="output_recal" label="${tool.name} on ${on_string} (Covariate File)" /> | 500 <data format="gatk_report" name="output_recal" label="${tool.name} on ${on_string} (Covariate File)" /> |
| 501 <data format="txt" name="output_log" label="${tool.name} on ${on_string} (log)" /> | 501 <data format="txt" name="output_log" label="${tool.name} on ${on_string} (log)" /> |
| 502 </outputs> | 502 </outputs> |
| 503 <tests> | 503 <tests> |
| 504 <test> | 504 <test> |
| 505 <param name="reference_source_selector" value="history" /> | 505 <param name="reference_source_selector" value="history" /> |