annotate tool_data_table_conf.xml.sample @ 12:b40671bc73d5 draft

Add help to HaplotypeCaller
author Jim Johnson <jj@umn.edu>
date Thu, 08 Nov 2012 10:55:32 -0600
parents 74c05070a3f8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
1 <tables>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
2 <!-- Location of Picard dict files valid for GATK -->
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
3 <table name="gatk2_picard_indexes" comment_char="#">
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
4 <columns>value, dbkey, name, path</columns>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
5 <file path="tool-data/gatk2_sorted_picard_index.loc" />
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
6 </table>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
7 <!-- Available of GATK references -->
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
8 <table name="gatk2_annotations" comment_char="#">
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
9 <columns>value, name, gatk_value, tools_valid_for</columns>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
10 <file path="tool-data/gatk2_annotations.txt" />
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
11 </table>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
12 </tables>