annotate tool_data_table_conf.xml.sample @ 28:6ef8eb568700
draft
Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values
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Jim Johnson <jj@umn.edu> |
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Mon, 18 Feb 2013 15:48:46 -0600 |
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74c05070a3f8 |
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line source |
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0
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1 <tables>
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2 <!-- Location of Picard dict files valid for GATK -->
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3 <table name="gatk2_picard_indexes" comment_char="#">
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4 <columns>value, dbkey, name, path</columns>
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5 <file path="tool-data/gatk2_sorted_picard_index.loc" />
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6 </table>
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7 <!-- Available of GATK references -->
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8 <table name="gatk2_annotations" comment_char="#">
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9 <columns>value, name, gatk_value, tools_valid_for</columns>
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10 <file path="tool-data/gatk2_annotations.txt" />
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11 </table>
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12 </tables>
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