Mercurial > repos > jjohnson > ensembl_variant_report
comparison ensembl_variant_report.xml @ 2:bf2687e2511e draft
planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
| author | jjohnson |
|---|---|
| date | Fri, 06 Jan 2017 16:28:35 -0500 |
| parents | c3a9e63e8c51 |
| children | bfc8ceb44c5f |
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| 1:a43d6ae3eb85 | 2:bf2687e2511e |
|---|---|
| 52 <when value="vcf"> | 52 <when value="vcf"> |
| 53 <param name="input_vcf" type="data" format="vcf" label="snpEff VCF file"/> | 53 <param name="input_vcf" type="data" format="vcf" label="snpEff VCF file"/> |
| 54 </when> | 54 </when> |
| 55 <when value="tsv"> | 55 <when value="tsv"> |
| 56 <param name="input_tsv" type="data" format="vcf" label="tabular file"/> | 56 <param name="input_tsv" type="data" format="vcf" label="tabular file"/> |
| 57 <param name="pos_column" type="data_column" data_ref="input" label="POS column"/> | 57 <param name="pos_column" type="data_column" data_ref="input_tsv" label="POS column"/> |
| 58 <param name="ref_column" type="data_column" data_ref="input" label="REF column"/> | 58 <param name="ref_column" type="data_column" data_ref="input_tsv" label="REF column"/> |
| 59 <param name="alt_column" type="data_column" data_ref="input" label="ALT column"/> | 59 <param name="alt_column" type="data_column" data_ref="input_tsv" label="ALT column"/> |
| 60 <param name="transcript_column" type="data_column" data_ref="input" label="Transcript ID column"/> | 60 <param name="transcript_column" type="data_column" data_ref="input_tsv" label="Transcript ID column"/> |
| 61 <param name="dp_column" type="data_column" data_ref="input" label="Read Depth (DP) column"/> | 61 <param name="dp_column" type="data_column" data_ref="input_tsv" label="Read Depth (DP) column"/> |
| 62 <param name="dpr_column" type="data_column" data_ref="input" label="Allele Count (DPR ro AN) column"/> | 62 <param name="dpr_column" type="data_column" data_ref="input_tsv" label="Allele Count (DPR ro AN) column"/> |
| 63 </when> | 63 </when> |
| 64 </conditional> | 64 </conditional> |
| 65 <conditional name="ref_source"> | 65 <conditional name="ref_source"> |
| 66 <param name="index_source" type="select" label="Source for Genomic Data"> | 66 <param name="index_source" type="select" label="Source for Genomic Data"> |
| 67 <option value="cached">Locally cached</option> | 67 <option value="cached">Locally cached</option> |