Mercurial > repos > jjohnson > ensembl_cdna_translate

changeset 2:b7f2f5e3390c draft

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Uploaded
author jjohnson
date Wed, 29 Nov 2017 16:33:02 -0500
parents 0f70b1b92161
children 410bb2292786
files ._ensembl_cdna_translate.py ._ensembl_cdna_translate.xml ensembl_cdna_translate.py ensembl_cdna_translate.xml
diffstat 4 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
Binary file ._ensembl_cdna_translate.py has changed
Binary file ._ensembl_cdna_translate.xml has changed
--- a/ensembl_cdna_translate.py	Wed Nov 29 15:56:44 2017 -0500
+++ b/ensembl_cdna_translate.py	Wed Nov 29 16:33:02 2017 -0500
@@ -29,7 +29,7 @@
 
 
 def ensembl_rest(ext, headers):
-    if True: print >> sys.stderr, "%s" % ext
+    # if True: print >> sys.stderr, "%s" % ext
     r = requests.get(server+ext, headers=headers)
     if r.status_code == 429:
         print >> sys.stderr, "response headers: %s\n" % r.headers
--- a/ensembl_cdna_translate.xml	Wed Nov 29 15:56:44 2017 -0500
+++ b/ensembl_cdna_translate.xml	Wed Nov 29 16:33:02 2017 -0500
@@ -33,7 +33,7 @@
         #if str($output_choice).find('translation') >= 0:
           | python '$__tool_directory__/ensembl_cdna_translate.py' -i '-' 
             #if $input and str($output_choice).find('transcript_bed') >= 0:
-                --transcripts '$transcript_bed
+                --transcripts '$transcript_bed'
             #end if
             #if str($output_choice).find('translation_bed') >= 0: 
                 --bed '$translation_bed'