# HG changeset patch
# User jjohnson
# Date 1511993287 18000
# Node ID d1055a763560ee3a1d4af8c619f1ba93237ee394
# Parent  410bb22927867837cc29e815f04703e774470676
Uploaded

diff -r 410bb2292786 -r d1055a763560 ._ensembl_cdna_translate.py
Binary file ._ensembl_cdna_translate.py has changed
diff -r 410bb2292786 -r d1055a763560 ._ensembl_cdna_translate.xml
Binary file ._ensembl_cdna_translate.xml has changed
diff -r 410bb2292786 -r d1055a763560 ensembl_cdna_translate.xml
--- a/ensembl_cdna_translate.xml	Wed Nov 29 16:33:26 2017 -0500
+++ b/ensembl_cdna_translate.xml	Wed Nov 29 17:08:07 2017 -0500
@@ -32,6 +32,10 @@
         #end if
         #if str($output_choice).find('translation') >= 0:
           | python '$__tool_directory__/ensembl_cdna_translate.py' -i '-' 
+            --min_length = $min_length
+            #if $enzyme:
+                --enzyme '$enzyme'
+            #end if
             #if $input and str($output_choice).find('transcript_bed') >= 0:
                 --transcripts '$transcript_bed'
             #end if
@@ -41,9 +45,6 @@
             #if str($output_choice).find('translation_fasta') >= 0: 
                 --fasta '$translation_fasta'
             #end if
-            #if $enzyme:
-                --enzyme '$enzyme'
-            #end if
         #end if
        
     ]]></command>