Mercurial > repos > jjohnson > ensembl_cdna_translate

annotate test-data/human_transcripts.bed @ 3:410bb2292786 draft

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author jjohnson
date Wed, 29 Nov 2017 16:33:26 -0500
parents a8218b11216f
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jjohnson
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1 chr1 14403 29570 ENST00000488147 1000 - 14402 14402 0,0,0 11 98,34,152,159,198,136,137,147,99,154,37, 0,601,1392,2203,2454,2829,3202,3511,3864,10334,15130, WASH7P-201 none none -1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1, unprocessed_pseudogene ENSG00000227232 WASH7P unprocessed_pseudogene
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jjohnson
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2 chr1 29553 31097 ENST00000473358 1000 + 29552 29552 0,0,0 3 486,104,122, 0,1010,1422, MIR1302-2HG-202 none none -1,-1,-1, lincRNA ENSG00000243485 MIR1302-2HG lincRNA
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jjohnson
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3 chr1 30266 31109 ENST00000469289 1000 + 30265 30265 0,0,0 2 401,134, 0,709, MIR1302-2HG-201 none none -1,-1, lincRNA ENSG00000243485 MIR1302-2HG lincRNA
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jjohnson
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4 chr1 30365 30503 ENST00000607096 1000 + 30364 30364 0,0,0 1 138, 0, MIR1302-2-201 none none -1, miRNA ENSG00000284332 MIR1302-2 miRNA
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jjohnson
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5 chr1 34553 36081 ENST00000417324 1000 - 34552 34552 0,0,0 3 621,205,361, 0,723,1167, FAM138A-201 none none -1,-1,-1, lincRNA ENSG00000237613 FAM138A lincRNA
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jjohnson
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6 chr1 35244 36073 ENST00000461467 1000 - 35243 35243 0,0,0 2 237,353, 0,476, FAM138A-202 none none -1,-1, lincRNA ENSG00000237613 FAM138A lincRNA
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jjohnson
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7 chr1 52472 53312 ENST00000606857 1000 + 52471 52471 0,0,0 1 840, 0, AL627309.6-201 none none -1, unprocessed_pseudogene ENSG00000268020 AL627309.6 unprocessed_pseudogene
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jjohnson
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8 chr1 57597 64116 ENST00000642116 1000 + 57596 57596 0,0,0 3 56,157,1201, 0,1102,5318, OR4G11P-202 none none -1,-1,-1, processed_transcript ENSG00000240361 OR4G11P transcribed_unprocessed_pseudogene
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jjohnson
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9 chr1 62948 63887 ENST00000492842 1000 + 62947 62947 0,0,0 1 939, 0, OR4G11P-201 none none -1, transcribed_unprocessed_pseudogene ENSG00000240361 OR4G11P transcribed_unprocessed_pseudogene
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jjohnson
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10 chr1 65418 71585 ENST00000641515 1000 + 69090 70008 0,0,0 3 15,54,2549, 0,101,3618, OR4F5-202 cmpl cmpl -1,-1,0, protein_coding ENSG00000186092 OR4F5 protein_coding
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jjohnson
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11 chr1 69054 70108 ENST00000335137 1000 + 69090 70008 0,0,0 1 1054, 0, OR4F5-201 cmpl cmpl 0, protein_coding ENSG00000186092 OR4F5 protein_coding
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jjohnson
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12 chr1 131024 134836 ENST00000442987 1000 + 131023 131023 0,0,0 1 3812, 0, CICP27-201 none none -1, processed_pseudogene ENSG00000233750 CICP27 processed_pseudogene
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jjohnson
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13 chr1 139789 140339 ENST00000493797 1000 - 139788 139788 0,0,0 2 58,265, 0,285, AL627309.2-201 none none -1,-1, antisense_RNA ENSG00000239906 AL627309.2 antisense_RNA
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jjohnson
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14 chr1 157783 157887 ENST00000410691 1000 - 157782 157782 0,0,0 1 104, 0, RNU6-1100P-201 none none -1, snRNA ENSG00000222623 RNU6-1100P snRNA
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jjohnson
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15 chr1 187890 187958 ENST00000612080 1000 - 187889 187889 0,0,0 1 68, 0, MIR6859-2-201 none none -1, miRNA ENSG00000273874 MIR6859-2 miRNA
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jjohnson
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16 chr1 263014 297502 ENST00000424587 1000 - 263013 263013 0,0,0 4 5190,150,105,158, 0,5652,26251,34330, AP006222.1-206 none none -1,-1,-1,-1, processed_transcript ENSG00000228463 AP006222.1 transcribed_processed_pseudogene
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jjohnson
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17 chr1 347981 348366 ENST00000458203 1000 - 347980 347980 0,0,0 1 385, 0, RPL23AP24-201 none none -1, processed_pseudogene ENSG00000236679 RPL23AP24 processed_pseudogene
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jjohnson
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18 chr1 439869 440232 ENST00000437905 1000 + 439868 439868 0,0,0 1 363, 0, WBP1LP7-201 none none -1, processed_pseudogene ENSG00000269732 WBP1LP7 processed_pseudogene
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jjohnson
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19 chr1 450702 451697 ENST00000426406 1000 - 450739 451678 0,0,0 1 995, 0, OR4F29-201 cmpl cmpl 0, protein_coding ENSG00000284733 OR4F29 protein_coding