# HG changeset patch
# User jjohnson
# Date 1495813510 14400
# Node ID b3ae16ffb54eaf981e722e12581e6859b1b1605b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper
diff -r 000000000000 -r b3ae16ffb54e eggnog_mapper.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/eggnog_mapper.xml Fri May 26 11:45:10 2017 -0400
@@ -0,0 +1,364 @@
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+ functional sequence annotation by orthology
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+ eggnog-mapper
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+ python emapper.py --version
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+ Min E-value expected when searching for seed eggNOG ortholog. Applies to phmmer/diamond searches.
+ Queries not having a significant seed orthologs will not be annotated.
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+ Min bit score expected when searching for seed eggNOG ortholog. Applies to phmmer/diamond searches.
+ Queries not having a significant seed orthologs will not be annotated. Default=60
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+ output_options['no_annot'] == ''
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+ db['mode'] == 'hmmer'
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+ output_options['report_orthologs']
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+ hits. 4
+ fields required: query, hit, evalue, score. Implies
+ --no_search and --no_refine.
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+ ]]>
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+ 10.1093/nar/gkv1248
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diff -r 000000000000 -r b3ae16ffb54e tool-data/eggnog_mapper.loc.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/eggnog_mapper.loc.sample Fri May 26 11:45:10 2017 -0400
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+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of eggnog_mapper data files.
+#
+#name value type data_dir
+#eggnog_4.5 eggnog_4.5 data /depot/data2/galaxy/eggnog/eggnog_4.5/data
+#eggnog_4.5arcNOG arcNOG hmmer /depot/data2/galaxy/eggnog/eggnog_4.5/data
+#eggnog_4.5euk euk hmmer /depot/data2/galaxy/eggnog/eggnog_4.5/data
+#eggnog_4.5dmnd eggnog_proteins.dmnd diamond /depot/data2/galaxy/eggnog/eggnog_4.5/data
+#
diff -r 000000000000 -r b3ae16ffb54e tool_data_table_conf.xml.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample Fri May 26 11:45:10 2017 -0400
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+ name,value,type,data_dir
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