view test-data/make_comp_file.sh @ 4:ea9772670fb5 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit ab8f3af4dd052475db01f8120df0f9da6e8fff29

#!/bin/bash

base_path=$1

emapper.py \
    -i $base_path/test-data/nlim_fragment.fasta \
    --output HMM_nlim \
    --output_dir $base_path/test-data \
    --override \
    --database $base_path/test-data/cached_locally/hmmdb_levels/ENOG411CB2I/ENOG411CB2I \
    --data_dir $base_path/test-data/cached_locally \
    --no_refine\
    --no_annot \
    --no_file_comments

emapper.py \
    -i $base_path/test-data/nlim_fragment.fasta \
    --output DIA_nlim \
    --output_dir $base_path/test-data \
    --override \
    -m diamond \
    --data_dir $base_path/test-data/cached_locally \
    --no_file_comments \
    --no_annot