Mercurial > repos > jjohnson > eggnog_mapper

annotate data_manager_conf.xml @ 3:9d94fe7ce8b9 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit e711920c41c8862d7d8133f7b455cf475924e103
author jjohnson
date Tue, 05 Nov 2019 15:53:42 -0500
parents a74d61dbd155
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a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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1 <?xml version="1.0"?>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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2 <data_managers>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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3 <data_manager tool_file="data_manager/data_manager_eggnog.xml" id="data_manager_eggnog" >
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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4 <data_table name="eggnog_mapper_db"> <!-- Defines a Data Table to be modified. -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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5 <output> <!-- Handle the output of the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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8 <column name="path" output_ref="out_file" >
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
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9 <move type="directory" relativize_symlinks="True">
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9d94fe7ce8b9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit e711920c41c8862d7d8133f7b455cf475924e103
jjohnson
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">eggnog_data/${value}</target>
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a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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11 </move>
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9d94fe7ce8b9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit e711920c41c8862d7d8133f7b455cf475924e103
jjohnson
parents: 2
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/eggnog_data/${value}</value_translation>
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a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
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13 <value_translation type="function">abspath</value_translation>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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14 </column>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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15 </output>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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16 </data_table>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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17 <data_table name="eggnog_mapper_hmm_dbs"> <!-- Defines a Data Table to be modified. -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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18 <output> <!-- Handle the output of the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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19 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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20 <column name="db_version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
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23 <column name="path" /> <!-- columns that are going to be specified by the Data Manager Tool -->
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
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24 </output>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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25 </data_table>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
jjohnson
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26 </data_manager>
a74d61dbd155 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
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27 </data_managers>