# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1378473202 18000
# Node ID 8027fc53f3f951e315be998d536e147a742766a0
# Parent  7c0d935bd2057cafcf44ea0c612d341057c2ac9f
Fix formatting error in defuse_results_to_vcf.py

diff -r 7c0d935bd205 -r 8027fc53f3f9 defuse_results_to_vcf.py
--- a/defuse_results_to_vcf.py	Tue Sep 03 10:59:43 2013 -0500
+++ b/defuse_results_to_vcf.py	Fri Sep 06 08:13:22 2013 -0500
@@ -258,8 +258,8 @@
       info1 = [svtype,'MATEID=%s' % mate_id2] + info
       info2 = [svtype,'MATEID=%s' % mate_id1] + info
       qual = int(float(fields[columns.index('probability')]) * 255) if columns.index('probability') else '.'
-      vcf1 = '%s\t%d\t%s\t%s\t%s\t%s\t%d\t%s'% (gene_chromosome1,genomic_break_pos1, mate_id1, ref1, alt1, qual, filt, ';'.join(info1) )
-      vcf2 = '%s\t%d\t%s\t%s\t%s\t%s\t%d\t%s'% (gene_chromosome2,genomic_break_pos2, mate_id2, ref2, alt2, qual, filt, ';'.join(info2) )
+      vcf1 = '%s\t%d\t%s\t%s\t%s\t%s\t%s\t%s'% (gene_chromosome1,genomic_break_pos1, mate_id1, ref1, alt1, qual, filt, ';'.join(info1) )
+      vcf2 = '%s\t%d\t%s\t%s\t%s\t%s\t%s\t%s'% (gene_chromosome2,genomic_break_pos2, mate_id2, ref2, alt2, qual, filt, ';'.join(info2) )
       add_vcf_line(gene_chromosome1,genomic_break_pos1,mate_id1,vcf1)
       add_vcf_line(gene_chromosome2,genomic_break_pos2,mate_id2,vcf2)
     write_vcf()