# HG changeset patch # User Jim Johnson # Date 1376065166 18000 # Node ID 2ecf821369864544eb9a94b6360ecff078d921d6 # Parent 2cbb285cc54e7de237c097b3d6f1cfa0c38c3507 Define defuse.results.tsv ext as subclass of tabular, add defuse_results_to_vcf to generate vcf form DeFuse results diff -r 2cbb285cc54e -r 2ecf82136986 datatypes_conf.xml --- a/datatypes_conf.xml Wed Aug 07 12:00:42 2013 -0500 +++ b/datatypes_conf.xml Fri Aug 09 11:19:26 2013 -0500 @@ -2,5 +2,6 @@ + diff -r 2cbb285cc54e -r 2ecf82136986 defuse.xml --- a/defuse.xml Wed Aug 07 12:00:42 2013 -0500 +++ b/defuse.xml Fri Aug 09 11:19:26 2013 -0500 @@ -86,8 +86,8 @@ keep_output == True - - + + do_get_reads == True diff -r 2cbb285cc54e -r 2ecf82136986 defuse_results_to_vcf.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/defuse_results_to_vcf.py Fri Aug 09 11:19:26 2013 -0500 @@ -0,0 +1,236 @@ +#!/usr/bin/env python +""" +# +#------------------------------------------------------------------------------ +# University of Minnesota +# Copyright 2012, Regents of the University of Minnesota +#------------------------------------------------------------------------------ +# Author: +# +# James E Johnson +# Jesse Erdmann +# +#------------------------------------------------------------------------------ +""" + + +""" +This tool takes the defuse results.tsv tab-delimited file as input and creates a Variant Call Format file as output. +""" + +import sys,re,os.path +import optparse +from optparse import OptionParser + +""" +http://www.1000genomes.org/wiki/analysis/variant-call-format/vcf-variant-call-format-version-42 + +5. INFO keys used for structural variants +When the INFO keys reserved for encoding structural variants are used for imprecise variants, the values should be best estimates. When a key reflects a property of a single alt allele (e.g. SVLEN), then when there are multiple alt alleles there will be multiple values for the key corresponding to each alelle (e.g. SVLEN=-100,-110 for a deletion with two distinct alt alleles). +The following INFO keys are reserved for encoding structural variants. In general, when these keys are used by imprecise variants, the values should be best estimates. When a key reflects a property of a single alt allele (e.g. SVLEN), then when there are multiple alt alleles there will be multiple values for the key corresponding to each alelle (e.g. SVLEN=-100,-110 for a deletion with two distinct alt alleles). +##INFO= +##INFO= +##INFO= +For precise variants, END is POS + length of REF allele - 1, and the for imprecise variants the corresponding best estimate. +##INFO= +Value should be one of DEL, INS, DUP, INV, CNV, BND. This key can be derived from the REF/ALT fields but is useful for filtering. +##INFO= +One value for each ALT allele. Longer ALT alleles (e.g. insertions) have positive values, shorter ALT alleles (e.g. deletions) have negative values. +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +For precise variants, the consensus sequence the alternate allele assembly is derivable from the REF and ALT fields. However, the alternate allele assembly file may contain additional information about the characteristics of the alt allele contigs. +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +6. FORMAT keys used for structural variants +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +These keys are analogous to GT/GQ/GL and are provided for genotyping imprecise events by copy number (either because there is an unknown number of alternate alleles or because the haplotypes cannot be determined). CN specifies the integer copy number of the variant in this sample. CNQ is encoded as a phred quality -10log_10p(copy number genotype call is wrong). CNL specifies a list of log10 likelihoods for each potential copy number, starting from zero. When possible, GT/GQ/GL should be used instead of (or in addition to) these keys. + +Specifying Complex Rearrangements with Breakends +An arbitrary rearrangement event can be summarized as a set of novel adjacencies. +Each adjacency ties together 2 breakends. The two breakends at either end of a novel adjacency are called mates. +There is one line of VCF (i.e. one record) for each of the two breakends in a novel adjacency. A breakend record is identified with the tag SYTYPE=BND" in the INFO field. The REF field of a breakend record indicates a base or sequence s of bases beginning at position POS, as in all VCF records. The ALT field of a breakend record indicates a replacement for s. This "breakend replacement" has three parts: +the string t that replaces places s. The string t may be an extended version of s if some novel bases are inserted during the formation of the novel adjacency. +The position p of the mate breakend, indicated by a string of the form "chr:pos". This is the location of the first mapped base in the piece being joined at this novel adjacency. +The direction that the joined sequence continues in, starting from p. This is indicated by the orientation of square brackets surrounding p. +These 3 elements are combined in 4 possible ways to create the ALT. In each of the 4 cases, the assertion is that s is replaced with t, and then some piece starting at position p is joined to t. The cases are: +REF ALT Meaning +s t[p[ piece extending to the right of p is joined after t +s t]p] reverse comp piece extending left of p is joined after t +s ]p]t piece extending to the left of p is joined before t +s [p[t reverse comp piece extending right of p is joined before t + +Examples: +#CHROM POS ID REF ALT QUAL FILT INFO +2 321681 bnd_W G G]17:198982] 6 PASS SVTYPE=BND;MATEID=bnd_Y +2 321682 bnd_V T ]13:123456]T 6 PASS SVTYPE=BND;MATEID=bnd_U +13 123456 bnd_U C C[2:321682[ 6 PASS SVTYPE=BND;MATEID=bnd_V +13 123457 bnd_X A [17:198983[A 6 PASS SVTYPE=BND;MATEID=bnd_Z +17 198982 bnd_Y A A]2:321681] 6 PASS SVTYPE=BND;MATEID=bnd_W +17 198983 bnd_Z C [13:123457[C 6 PASS SVTYPE=BND;MATEID=bnd_X +""" + +vcf_header = """\ +##fileformat=VCFv4.1 +##source=defuse +##reference=%s +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO\ +""" + +def cmp_alphanumeric(s1,s2): + if s1 == s2: + return 0 + a1 = re.findall("\d+|[a-zA-Z]+",s1) + a2 = re.findall("\d+|[a-zA-Z]+",s2) + for i in range(min(len(a1),len(a2))): + if a1[i] == a2[i]: + continue + if a1[i].isdigit() and a2[i].isdigit(): + return int(a1[i]) - int(a2[i]) + return 1 if a1[i] > a2[i] else -1 + return len(a1) - len(a2) + +def __main__(): + # VCF functions + chr_dict = dict() + def add_vcf_line(chr,pos,id,line): + if chr not in chr_dict: + pos_dict = dict() + chr_dict[chr] = pos_dict + if pos not in chr_dict[chr]: + id_dict = dict() + chr_dict[chr][pos] = id_dict + chr_dict[chr][pos][id] = line + + def write_vcf(): + print >> outputFile, vcf_header % (refname) + for chr in sorted(chr_dict.keys(),cmp=cmp_alphanumeric): + for pos in sorted(chr_dict[chr].keys()): + for id in chr_dict[chr][pos]: + print >> outputFile, chr_dict[chr][pos][id] + #Parse Command Line + parser = optparse.OptionParser() + # files + parser.add_option( '-i', '--input', dest='input', help='The input defuse results.tsv file (else read from stdin)' ) + parser.add_option( '-o', '--output', dest='output', help='The output vcf file (else write to stdout)' ) + parser.add_option( '-r', '--reference', dest='reference', default=None, help='The genomic reference id' ) + (options, args) = parser.parse_args() + + # results.tsv input + if options.input != None: + try: + inputPath = os.path.abspath(options.input) + inputFile = open(inputPath, 'r') + except Exception, e: + print >> sys.stderr, "failed: %s" % e + exit(2) + else: + inputFile = sys.stdin + # vcf output + if options.output != None: + try: + outputPath = os.path.abspath(options.output) + outputFile = open(outputPath, 'w') + except Exception, e: + print >> sys.stderr, "failed: %s" % e + exit(3) + else: + outputFile = sys.stdout + + refname = options.reference if options.reference else 'unknown' + + svtype = 'SVTYPE=BND' + filt = 'PASS' + columns = [] + try: + for linenum,line in enumerate(inputFile): + ## print >> sys.stderr, "%d: %s\n" % (linenum,line) + fields = line.strip().split('\t') + if line.startswith('cluster_id'): + columns = fields + ## print >> sys.stderr, "columns: %s\n" % columns + continue + cluster_id = fields[columns.index('cluster_id')] + gene_chromosome1 = fields[columns.index('gene_chromosome1')] + gene_chromosome2 = fields[columns.index('gene_chromosome2')] + genomic_strand1 = fields[columns.index('genomic_strand1')] + genomic_strand2 = fields[columns.index('genomic_strand2')] + gene1 = fields[columns.index('gene1')] + gene2 = fields[columns.index('gene2')] + gene_info = 'GENEID=%s,%s' % (gene1,gene2) + gene_name1 = fields[columns.index('gene_name1')] + gene_name2 = fields[columns.index('gene_name2')] + gene_name_info = 'GENE=%s,%s' % (gene_name1,gene_name2) + genomic_break_pos1 = int(fields[columns.index('genomic_break_pos1')]) + genomic_break_pos2 = int(fields[columns.index('genomic_break_pos2')]) + breakpoint_homology = int(fields[columns.index('breakpoint_homology')]) + homlen = 'HOMLEN=%s' % breakpoint_homology + orf = fields[columns.index('orf')] == 'Y' + exonboundaries = fields[columns.index('exonboundaries')] == 'Y' + read_through = fields[columns.index('read_through')] == 'Y' + span_count = int(fields[columns.index('span_count')]) + splitr_count = int(fields[columns.index('splitr_count')]) + splice_score = int(fields[columns.index('splice_score')]) + probability = fields[columns.index('probability')] if columns.index('probability') else '.' + splitr_sequence = fields[columns.index('splitr_sequence')] + split_seqs = splitr_sequence.split('|') + mate_id1 = "bnd_%s_1" % cluster_id + mate_id2 = "bnd_%s_2" % cluster_id + ref1 = split_seqs[0][-1] + ref2 = split_seqs[1][0] + b1 = '[' if genomic_strand1 == '+' else ']' + b2 = '[' if genomic_strand2 == '+' else ']' + alt1 = "%s%s%s:%d%s" % (ref1,b2,gene_chromosome2,genomic_break_pos2,b2) + alt2 = "%s%s:%d%s%s" % (b1,gene_chromosome1,genomic_break_pos1,b1,ref2) + #TODO evaluate what should be included in the INFO field + info = ['DP=%d' % (span_count + splitr_count),'SPLITCNT=%d' % splitr_count,'SPANCNT=%d' % span_count,gene_name_info,gene_info,homlen,'SPLICESCORE=%d' % splice_score] + if orf: + info.append('ORF') + if exonboundaries: + info.append('EXONBND') + info1 = [svtype,'MATEID=%s' % mate_id2] + info + info2 = [svtype,'MATEID=%s' % mate_id1] + info + qual = int(float(fields[columns.index('probability')]) * 255) if columns.index('probability') else '.' + vcf1 = '%s\t%d\t%s\t%s\t%s\t%s\t%s\t%s'% (gene_chromosome1,genomic_break_pos1, mate_id1, ref1, alt1, qual, filt, ';'.join(info1) ) + vcf2 = '%s\t%d\t%s\t%s\t%s\t%s\t%s\t%s'% (gene_chromosome2,genomic_break_pos2, mate_id2, ref2, alt2, qual, filt, ';'.join(info2) ) + add_vcf_line(gene_chromosome1,genomic_break_pos1,mate_id1,vcf1) + add_vcf_line(gene_chromosome2,genomic_break_pos2,mate_id2,vcf2) + write_vcf() + except Exception, e: + print >> sys.stderr, "failed: %s" % e + exit(1) + +if __name__ == "__main__" : __main__() + diff -r 2cbb285cc54e -r 2ecf82136986 defuse_results_to_vcf.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/defuse_results_to_vcf.xml Fri Aug 09 11:19:26 2013 -0500 @@ -0,0 +1,34 @@ + + + generate a VCF from a DeFuse Results file + + defuse + + defuse_results_to_vcf.py --input $defuse_results --reference ${defuse_results.metadata.dbkey} --output $vcf + + + + + + + + + + + + + + + + + +**Defuse Results to VCF** + +Generates a VCF_ Variant Call Format file from a DeFuse_ results.tsv file. + +This program relies on the header line of the results.tsv to determine which columns to use for genrating the VCF file. + +.. _VCF: http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 +.. _DeFuse: http://sourceforge.net/apps/mediawiki/defuse + + diff -r 2cbb285cc54e -r 2ecf82136986 test-data/mm10_results.filtered.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mm10_results.filtered.tsv Fri Aug 09 11:19:26 2013 -0500 @@ -0,0 +1,46 @@ +cluster_id splitr_sequence splitr_count splitr_span_pvalue splitr_pos_pvalue splitr_min_pvalue adjacent altsplice break_adj_entropy1 break_adj_entropy2 break_adj_entropy_min breakpoint_homology breakseqs_estislands_percident cdna_breakseqs_percident deletion est_breakseqs_percident eversion exonboundaries expression1 expression2 gene1 gene2 gene_align_strand1 gene_align_strand2 gene_chromosome1 gene_chromosome2 gene_end1 gene_end2 gene_location1 gene_location2 gene_name1 gene_name2 gene_start1 gene_start2 gene_strand1 gene_strand2 genome_breakseqs_percident genomic_break_pos1 genomic_break_pos2 genomic_strand1 genomic_strand2 interchromosomal interrupted_index1 interrupted_index2 inversion library_name max_map_count max_repeat_proportion mean_map_count min_map_count num_multi_map num_splice_variants orf read_through repeat_proportion1 repeat_proportion2 span_count span_coverage1 span_coverage2 span_coverage_max span_coverage_min splice_score splicing_index1 splicing_index2 probability +8647 GTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGGCACGTCCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAAATGACTACATTAGGT|GAAGATTGTAAAAAATTGACATCAGAAATATTTACAGAAATAGATACCTGTTTGAATAAAGTTAGAGATGAAATTTTTGCTAAACTTCAACCGAAGCTTAGATGCACATTAGGTGACATGGAAAGTCCTGTGTTTGCACTTCCTG 4 0.849232794977309 0.875860929877954 0.794775556794258 N N 3.72551845106187 3.02448896101185 3.02448896101185 1 0.0366733649981732 0 N 0 N Y 2482 2085 ENSMUSG00000028266 ENSMUSG00000041264 + - 3 5 144205220 149215434 coding coding Lmo4 Uspl1 144188530 149184350 - + 0 144201813 149198645 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.831776131589327 0.982288003019777 0.982288003019777 0.831776131589327 4 - - 0.950339354539546 +12095 CTTCCAGGGTCCCCCGAGCCTAATGGATGCCGAGACAGACGAGGGCATGGACTATACAGGCTGTAGCCCTGGAGCGGCGTCCTCAGAGTCTTCCACCATGGACCGTAGCTGTTCCAGCACCC|CTGGCCCTTGACATCTAGCACCCCTTCACCCTCTTCCTGGGGACCCAGCAGGTGGTATGTGGCCGTGGAGCCCTCCGGGCTGTGGCTGTCCTTCCCAGGAGAGGATGACGTAGACTCGTTGCTGACAGGGGAGATGTCACTGCTGC 6 0.869976758916331 0.907802910133282 0.774396849342807 Y Y 3.64400585547602 3.28189243439864 3.28189243439864 0 0.983667499542934 0 Y 0 N N 0 1453 ENSMUSG00000086606 ENSMUSG00000028975 - + 4 4 148948914 149099876 intron coding Gm13205 Pex14 148947492 148960535 - - 0 148948907 148961548 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 0.760481034595956 1.02189639023832 1.02189639023832 0.760481034595956 4 - - 0.976704594819493 +4068 CGACACGCCGGGGCTGGCTGAGGAAAACAAAACGAAGCCCCTGGAGACCCGGCTTATCTCAGAGACCACAGCTATTTGCAAACCAGAGCAGGTGGCCAAACAAATTGTCAAAGATGCCATA|TACCGTTCCCCAGCTGAAGAGTTCTGAATCCACGCCGGATCCTTCTCAACAGTCTGTTTTACGGGAACTTTTATTAACCACTCCTTCCCCGTGATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCACTCATGCCTGAAGATGTTTCTTTTCC 8 1 0.541521196503195 0.26082452496772 N Y 3.46128890676658 3.81976875220098 3.46128890676658 2 0 0 N 0.794128973014604 N N 775 35409 ENSMUSG00000009905 ENSMUSG00000022816 + - 1 16 106759742 37836514 coding intron Kdsr Fstl1 106720410 37776873 - + 0.00358422939068104 106734547 37799068 - - Y - - N dataset_6344_files 4 1 1.81818181818182 1 4 1 N N 0 1 11 0.974366325576069 1.17240826166877 1.17240826166877 0.974366325576069 4 - - 0.913877182950088 +12868 GCGGTCTCGGCTCCAGCGGCAGTAGCAGCGGCGCCGGTCCCGTGTGCAGGAGCTCCTTTGCGGCCCAGTTTCTTGGCCATCGCCTGCTCTCCCCACAGCGCCAGGACGAGTCCCGTGCGCGTCCGTCCGCGGAGGTCTTTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGA|AAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAAAACTT 69 1 0.439895614069599 0.332872660216425 N Y 3.30124852419771 2.96787791690762 2.96787791690762 0 0.0997837503861599 0.00401606425702794 N 0.540315106580167 N N 41631 0 ENSMUSG00000004980 ENSMUSG00000085456 + + 6 10 51469894 73327027 coding intron Hnrnpa2b1 Gm15398 51460434 73201399 - - 0.0997837503861599 51467295 73201702 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 41 1.14864322933764 0.720872647377417 1.14864322933764 0.720872647377417 1 - - 0.520098627306064 +5160 TACGGATTCATTCAGTGTTCAGAACGGCAAGCTAGACTTTTCTTCCACTGTTCACAATATAATGGCAACCTCCAAGACTTAAAAGTAGGAGATGATGTTGAATTTGAAGTATCATCTGACCGGAGGACTGGGAAACCTATTGCTATTAAATTGGTGAAGATAAAACCAGAAATACATCCTGAAGAACGAATGAACGGAC|AAGAAGTATTTTATCTGACTTACACCCCTGAAGATGTGGAAGGGAAAGTTCAGC 33 1 0.767323324767952 0.471361574015707 N Y 3.3022815939676 3.55553920790569 3.3022815939676 91 0.944663167104112 0.00393700787401585 N 0.944663167104112 N N 10681 0 ENSMUSG00000068823 ENSMUSG00000087940 + - 3 18 103058189 28309891 coding upstream Csde1 SNORA17 103020546 28309760 + + 0 103040040 28188917 + - Y - - N dataset_6344_files 2 0 1.03333333333333 1 1 1 N N 0 0 30 1.1011131646754 0.67334258271517 1.1011131646754 0.67334258271517 3 - - 0.835626866413202 +8748 GGGGTAGATCACCTTCCGAGGGTCTCCATGGGTCCAGGCTATGATGCCCACAGCCACATAGCCTACGATGGCCAGGAAGAGCAACACACAGCAAATGACATCTGTGCATCCCCTGTTGTAAATGGGTCCTTTGAAGGTGGGGTCGTATTTCTGAGGCGTCCC|ATAGACTGCGTCCTTCCGATCGTCCTCCATGGCCTCAACCGAGGAGAGCTGAGTCCGAAGCCAGCGCGACCCCAACCCAAGCGGGCGGGAGACACCGCGCGCTGCTGGCCCCGCC 51 1 0.844316325604616 0.871821260113135 Y Y 3.29447165365238 3.73336824417043 3.29447165365238 2 0 0 Y 0.991335627150454 N N 6343 2 ENSMUSG00000057193 ENSMUSG00000003309 - - 9 9 21355025 21312333 coding upstream Slc44a2 Ap1m2 21337828 21295457 + - 0 21337962 21320850 - + N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 52 1.3070767782118 0.958522970688653 1.3070767782118 0.958522970688653 2 - - 0.74403558965543 +11169 CCACATCTGACAGAACTTGCCACTGTGCCTGCAACCTTGTCTGAGAGGAACCCTTCTCTG|AGGATGGACACTTCTCACACTACAAAGTCCTGTTTGCTGATTCTTCTTGTGGCCCTACTGTGTGCAGAAAGAGCTCAGGGACTGGAGTGTTACCAGTGCTATGGAGTCCCATTTGAGACTTCTTGCCCATCAATTACCTGCCCCTACCCTGATGGAGTCTGTGTTACTCAGGAGGCAGCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAGAACAATCTTTGCTTACCC 410 1 0.87136611677351 0.978590093310325 Y Y 3.45293525254824 3.55976477294109 3.45293525254824 0 0 0.152910958904109 Y 0.966780821917808 N Y 1416 5049 ENSMUSG00000079018 ENSMUSG00000075602 + - 15 15 75048837 74997634 utr5p utr5p Ly6c1 Ly6a 75045017 74994878 - - 0 75048442 74996568 - + N - - N dataset_6344_files 2 0 1.53082191780822 1 155 2 Y Y 0 0 292 0.728794324821125 1.49719703686079 1.49719703686079 0.728794324821125 4 - - 0.93076564160702 +12600 CTAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATACAGGGCTAAGTTCTGCGGGGTGTGCACAGACGGCCGCTGCTGCACACCGCACAGAACCACCACTCTGCCAGTGGAGTTCAAATGCCCCGATGGCGAGATCATGAAAAAGAATATGATGTTCATCAAG|CCCTGCCCCTGCCATTACCACTGTTCTGGGGTCCCTGGCATGCTCCCATTAC 1 1 0.820229055260519 0.873212995139997 N N 3.28548615724827 3.17936818462789 3.17936818462789 0 0.482950872656755 0.482950872656755 N 0.482950872656755 N N 7298 2735 ENSMUSG00000019997 ENSMUSG00000015133 + + 10 7 24598683 66388350 coding intron Ctgf Lrrk1 24595442 66226912 + - 0.482950872656755 24597524 66355922 + - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 1.02981806768202 0.41192722707281 1.02981806768202 0.41192722707281 3 - - 0.58275607356487 +1855 CCTGGTCACACAGCTCTCCTAGGAAGCGCGTCTCCAATGACTCGTTTGTCAACCCCAGGTGTCTTCCACGTTGTGGTTTCAACTTCATAATTCTCTGAAGTCTTATTCAT|CTCTTTGTCAAGCCCACGGCGTCAGCCTCTGACACGAGGGCGGGCGTCCTCGCCTCCGGGGTGAAAGAGGGGCGCAGCGGGCCGCCCCTCCCCCCCGCCCCCCTACGACACGCGGGGCCCTGCCTCGGGCGACCTGTTGGCAGGGCGCGTCACGTGACGCGGCGGGCCGCGCCGTCCCC 4 0.769054178023969 0.159736089157399 0.42467594723228 Y Y 3.40528677690917 3.51935717616377 3.40528677690917 0 0.981880877742947 0 Y 0.0487460815047023 N N 0 8476 ENSMUSG00000097162 ENSMUSG00000039361 - - 7 7 90129474 90209447 intron upstream AC130210.1 Picalm 90124858 90130232 - + 0 90125032 90129872 + - N - - N dataset_6344_files 1 0.23489932885906 1 1 0 1 N Y 0 0.23489932885906 9 0.887227873695282 1.18032993911247 1.18032993911247 0.887227873695282 4 - - 0.949188379753168 +1870 CTGGGTCAAGAGCCGGAGGGACAGGACCAGAGCACCCCTTACGCCAGAACTAGCTCTCCTTGTTCCTACTGGGTGACCTCATCTCGCCACGCCTCCTCAGGTGAACACCCGGGCTGGTAACGTCACTTCCTGC|CAGGGTTTCACTATGTAGACCCTGGTCGGCCTGGAACTCTATAGACCAGACTGGCCTCGAGCTCAGATCCGTCCCCCTCTGCTGTCCCAGCACGGGGATTAAGAACGCGCCACCACTACAGCTGACCGGA 2 0.788660184540219 0.550050944563454 0.182990959521483 Y Y 3.63552422018169 3.63193049733206 3.63193049733206 4 0 0 Y 0 N N 1543 697 ENSMUSG00000044786 ENSMUSG00000003444 - + 7 7 28379255 28392708 downstream intron Zfp36 Med29 28376784 28386146 - - 0 28376683 28392166 + - N - - N dataset_6344_files 1 0.869158878504673 1 1 0 1 N Y 0 0.869158878504673 8 1.08526980978798 0.847619486476743 1.08526980978798 0.847619486476743 1 - - 0.841318537051835 +3153 CAGAGCTATGTAGAAAGACCCTGTCTGGTAAGTAAATAAAAACATAGCCAGGCATGGTGGCAATCAGCAGGTAGATTGGAGTTTGAGGTCATCCTGGTCTGGAGAGTGAGTTCCAGGAGAGCCAAGATTACACAAACCC|TGTCTTTTTCTTTCTTTCTGTTGTTGTTGTTGCTGTTCCTGCTGCTGCTGCTGTTTTGCTTTTCATGACAGGGTTTCTCTGTGTCTCTGTGCAACTTTGGCTATCCTGGAATTCACACTGTAGACCAGGCTGGCCTTGAATTCACACAGATCCATCTG 16 1 0.656277930324132 0.671834466829468 Y Y 3.40740634961144 2.41484814640267 2.41484814640267 0 0.9928298971561 0 Y 0.985659794312201 N N 0 30 ENSMUSG00000097379 ENSMUSG00000047786 - - 17 17 17395303 17459387 intron intron AC154200.1 Lix1 17389943 17402672 - + 0 17395298 17411818 + - N - - N dataset_6344_files 1 0.709459459459459 1 1 0 1 N Y 0.685314685314685 0.709459459459459 25 1.13279987445023 1.17240826166877 1.17240826166877 1.13279987445023 1 - - 0.81041504882724 +11596 GCCGGAGCAGATCAGGCTGAAAGTTGGTGGTGTGGACCCAAAGCAGCTAGCCGTCTATGAAGAGTTTGCACGAAATGTGCCTGGCTTCTTACCTACAAATGACTTAAGTCAGCCTACAGGGTTTTTAGCTCAGCCCATGAA|GTTTCTGGATCAAGATGTGAGCTTTCAGCTGTTGCTTGAGCATCATGCCTGCCTGCCTGCCACCACGCTCTCGGCCAGGATAGTGATGGATTCCTTCCCTCGGACTATAAGCCCCAAATGAACCCTTCCTTCTATGAGTTGCCT 8 0.974101244860941 0.684001003266195 0.530048089286902 N Y 3.49640736351508 3.32783191248938 3.32783191248938 0 0 0 Y 0 N N 6004 544 ENSMUSG00000036550 ENSMUSG00000036564 + + 8 8 95807462 95715119 coding intron Cnot1 Ndrg4 95719451 95676980 - + 0 95739809 95682960 - + N - - N dataset_6344_files 1 1 1 1 0 1 N N 0 1 16 1.12487819700652 1.17240826166877 1.17240826166877 1.12487819700652 1 - - 0.873952352979217 +3783 CTCTGTTCGTGCATCCCTGGGATATGCAGATGGATGGACGAATGGCCAAATACTGGCTGCCTTGGCTCGTAGGTTTGTGCTGGACTAGGGTTGGGAACACAGCACCAACTCTTGGGTTTTTTCTGTTATCCATGGAATTCTGTTCT|TTTCTTTCCGAGTGACCCCCACTTTACGGCGTCTCCCAATGACAAGAGGCGCAGAGCATTGTGGTCCCGCGGGTCCGAGA 2 0.867750583125795 0.425502304916607 0.692249690893423 Y Y 3.22804973003685 3.42048008240514 3.22804973003685 0 0 0 Y 0.987555066079295 N N 0 752 ENSMUSG00000026348 ENSMUSG00000026349 + - 1 1 127767564 127808061 intron upstream Acmsd Ccnt2 127729413 127774164 + + 0 127753955 127773930 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 6 1.02189639023832 0.649577550384046 1.02189639023832 0.649577550384046 3 - - 0.711778687837589 +4912 TAACAGAACAAGAGCAATGTGCTAGAATAGAAGACCAGAAAATGAAATGGTGGAGTTTGA|GGCTGGATAGACAGTTTGAAAGGTAAGTATTGAAAAACACTTGAATTTGGGTCAGTACAAAGGGACATGCAGAGACTTTGAATCATCAAAACTCCAGCATGCATTGTCTTACGGATGTTTAGATAGGTGTGTTTTGGACAACACTCTGGGTTCTTGTAATGATGTTGATCAAATGTCTGAG 15 1 0.895469718833858 0.922600375157455 N Y 3.29868787111796 3.36447795254773 3.29868787111796 0 0.933608815426997 0 N 0.933608815426997 N N 0 0 ENSMUSG00000088422 ENSMUSG00000053332 + - 5 1 79639109 161038539 downstream intron 7SK Gas5 79638815 161034422 - + 0.933608815426997 79638354 161036831 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.459457291735057 0.808011099258204 0.808011099258204 0.459457291735057 1 - - 0.592482164323654 +5141 TCTTATCTCTGTGTTGGTGTGCTTCTCTGTTTGATGACAGAGCAGGGTCTTGCTGAACTGCACCTACTGGAGTAGGCAACTGTTTACCAATCCAGTCATATTCATAATCAAACATATACCCTTTTCGATCAAACAAGTCAGTAAAAAGCTTTCTTAGGTAATCATAGTCTGGCTTTTCAAAAAAATCCAGCCTTCGTACGTAACGGAGAT|ACGTTGCCATTTCTGGGAAGTTCTCACACAACACTTCTATTGGTGTGGCTCGTTT 9 1 0.853164221793603 0.997416520640376 N Y 3.60831833727406 3.59847695253922 3.59847695253922 266 0.981886534518113 0.981886534518113 N 0.981886534518113 N N 2227 0 ENSMUSG00000073563 ENSMUSG00000083798 - + 18 X 53955684 53418967 coding intron Csnk1g3 Gm14584 53862113 53418331 + + 0 53932206 53418862 - + Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 17 1.2040949714436 0.990209680463485 1.2040949714436 0.990209680463485 2 - - 0.788432447586541 +1886 CGCGGGGCGCCCGCCGGCTCACACTCCCGCGCTCTCTCTCCGGGTTTGGCGGCCGCCAGGAGGAGGAAGAGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGTGGAGCGAGCGCAGAAG|TAGCTGCTGCTGCTGGTGGTGACAATGTCAAATAACGGCGTAGACATCCAGGACAAACCCCCAGCCCCTCCGATGAGAAACACCAGCACTATGATTGGAGCCGGCAGCAAAGACACTGGAACCCTAAACCACGGCTCCAAACCTCTGCCTCCAAACCCAGAGGAG 18 1 0.708948431161152 0.783431002546196 Y Y 2.65454686157692 3.52101274054962 2.65454686157692 0 0.983110527572213 0 Y 0.983110527572213 N N 16 2476 ENSMUSG00000042797 ENSMUSG00000030774 - - 7 7 97738247 97912381 upstream utr5p Aqp11 Pak1 97726379 97842935 - + 0 97788974 97854436 + - N - - N dataset_6344_files 1 0.366666666666667 1 1 0 1 N Y 0.366666666666667 0 18 0.950601293244945 1.29915510076809 1.29915510076809 0.950601293244945 4 - - 0.970255256454431 +9297 GTGCTGGGCAGGAAGTCCCGGGCCAGGCAGCCCATGGCCACCAGATTCTTATCAGACAGGGGGCTCTCGCAGGAGACGAGGGGGAAGACATTTGGGAAGGACTGACTCT|CATTTGCGGTGCCTGGTTTCGGAGAGGTCCAGAGTCTTTGTGTGGAATTGTTCCTTCAAAGCCACCGAGGCTGGCTGGTCCATGAGCAGCCAGGTGGATGGGTGGCAGAAGCC 20 0.318065745640931 0.64026046146514 0.56228459372928 N Y 3.05166433869594 3.43614916339873 3.05166433869594 0 0 0 Y 0.990866828485621 N N 1488 0 ENSMUSG00000076617 ENSMUSG00000092748 - + 12 12 113422730 113425227 coding upstream Ighm AC073553.3 113418950 113425150 - - 0 113422730 113426655 + - N - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 6 0.665420905271462 0.879306196251575 0.879306196251575 0.665420905271462 4 - - 0.831715391282697 +5326 GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCC|GAGTTACACAGTTTTAATGACTTCCTTACTTCTCATGATCTCTATACTGTTTAACTTTCCTCGGTGTGTTTTTAAGTCTTTGCTATCTTGTTCTAGTTTTTTGCAAGAATCACGAAAATGATTCTTGGATTTCCAGACTCTTCCTTTTGAAAGCTG 7 1 0.607242467201396 0.755062684986217 N Y 3.49744043328497 3.49528100778935 3.49528100778935 9 0.960654062340317 0 N 0.967211718616931 N N 2963 0 ENSMUSG00000039671 ENSMUSG00000073647 + + 2 18 165899016 4198969 utr3p downstream Zmynd8 Gm10557 165784152 4198216 - - 0.00979390223130638 165827729 4198107 - - Y - - N dataset_6344_files 476 0.993464052287582 298.461538461538 168 13 1 N N 0.993464052287582 0 13 1.21201664888731 1.34668516543034 1.34668516543034 1.21201664888731 1 - - 0.536685629613134 +1721 CGTACCTCCCTCCCAGCAACCGGCCTGGCGGCAGCGCGGCTACAAAACTGAGGAGGCGGAGCCGAGACGGAGTCGGTACTGCGCTCTGACTCCTAGACCAGGTTTAAGTTTTTGAAGTTGAAGTAGGTCTACACAGTAGGAACCCATGTCTTTTCTTGTAAGTAAACCAGAGCGCATTA|GGGCCAATGAGGCGAGCTCAGAGTCCATAGCATTGTTCTCCAAACCA 8 0.903915350299452 0.697638501162383 0.785699237375327 N Y 3.65384724021086 3.68527868815389 3.65384724021086 142 0.936451401255975 0.343331146311745 N 0.936451401255975 N N 800 0 ENSMUSG00000069631 ENSMUSG00000087034 + + 11 5 106202168 60232198 coding upstream Strada Cbfa2t2-ps1 106163330 60231482 - + 0 106187103 60176541 - + Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.879306196251575 0.475300646622473 0.879306196251575 0.475300646622473 1 - - 0.738431070020728 +1027 GCGGCAGCCGGTTCGGGCGGGCGGCATCATGGACGAGAAGTTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTCTCCGAGTCCCAGGTCAAGAGCCTCTGCGAGAAG|TGCTGCCTTTGACAGAGATGACATGCTTATACCATGCGGGTGGCACGAAGCTGTGAAGTGGTGATGACGGGGATGAGCTTGGACATCCTACGAGAGTGGCAAAGGTGAAGCAAGCCCAGGTGCTGGCTGTGCAAGG 2 1 0.148625497007208 0.21082086276253 N N 3.33524062522047 3.43039601505348 3.33524062522047 3 0 0 N 0 N N 10063 1785 ENSMUSG00000020349 ENSMUSG00000035021 + + 11 12 52127778 55014348 coding intron Ppp2ca Baz1a 52098681 54892989 + - 0 52099150 54980379 + - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 10 0.942679615801238 1.07734813234427 1.07734813234427 0.942679615801238 4 - - 0.83438414122479 +7746 AAAGGGAGTCGAGACTGCCTTCTGCGCGCGCCCGGCTTTGCGCGCCTCCGCCACCAGATGTGGGGGGATGGGAGGCCCCCTCCGCGGCCCCTTCCCCACCCAGCCCAGAAAGCTGAACTGGCAAG|AGGCAATTTGAAACAAGCCACTCCAACCTCTTTTTCAAAGTTATAGGAGGTTCCCTGTCTTGAAGTCTCCTGCCTTGGATTTTCTGAGGTGCTGCTATTCTGGGCAACTATCAAAATCCTACCTGTTAAAACATGATGGATTAGAGAAAAAAAACAACCCAC 26 1 0.707412664952061 0.861438628736582 Y Y 3.14574680596571 3.22961716614005 3.14574680596571 0 0 0 Y 0 N N 0 0 ENSMUSG00000087658 ENSMUSG00000087626 + - 6 6 52162119 52174059 intron intron Gm15051 Gm15050 52156902 52172881 + + 0 52158684 52173634 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 20 1.02189639023832 1.23578168121843 1.23578168121843 1.02189639023832 2 - - 0.746044848941682 +8762 GGGGGCGGGGCTGAGCGCGGCCGCAGCCATTTTGGTGGAAGAGAAACAATAGGACGGAAGCGTCGCGGGACTGGGCTGTGGCCGCAG|AGTGTCCTGGCCTGCACAAACCGAGGAGCTGAGATCAAACAGGTGGCTGTAAGGACAGACAGTGAACGGAGGGCAAGCCGGCCTCTGGACCCCGCTGCCTCCCCTTTCTCCCTGCTGCTCGTGTCCAGAGGATGAGCCCAGCCTTCAGGACCATGGACGTGGAGCCCCGCACCAAGGGCATCC 28 0.498252441818171 0.890426951441059 0.30351938174741 Y Y 3.55041790174621 3.58424216889964 3.55041790174621 0 0.977096322687365 0.0380455528693218 Y 0.977096322687365 N N 0 714 ENSMUSG00000088626 ENSMUSG00000032599 - - 9 9 108795388 108806333 downstream utr5p SNORA28 Ip6k2 108795243 108795994 - + 0 108783870 108796064 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 8 0.705029292490001 1.27539006843697 1.27539006843697 0.705029292490001 4 - - 0.953988239876003 +13800 GATTGTTAGGGATGGGTCCTTGGTCAGCTGTCCAGAATGCTAGAGCTTCGTCCTCCTGGGAGATGGTTTCAGTCCTTACCCCCAGGACTCTGATGAGATCCTGAGGGAATCCACCCTCTGCTGATGGCCCAGTGAAAGCC|AGGCTCCGTGGCTTTACAGTGGATGGGATCTGGGAGAGTAGAGGGAAGGTTCTAGAACCCTGAAACCAGACCACTCTATTAGCGAACTCACAGCTGCCTTGTGGTGTAGAC 3 0.978409273957491 0.969552944230377 0.898574822628826 N Y 3.329991337985 3.51679652308403 3.329991337985 0 0 0 Y 0 N N 575 443 ENSMUSG00000053799 ENSMUSG00000024987 + - 19 19 37683245 37701528 intron upstream Exoc6 Cyp26a1 37550418 37697808 + + 0 37678397 37696729 + - N - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 12 0.839697809033035 0.855541163920451 0.855541163920451 0.839697809033035 1 - - 0.80116231284735 +5983 CCATGTCAAACCACCATCCACGGCTGTCGTCCTCGAAGTGCAGGTAGTCCATCCTGTGAGCGCCGTGCGGGAACTGCCTCCGTGTCACTGGGGCGGCGCGCCTGTGGAAT|CCTCCGAAGAGATGGAATCCTTTCCTGCAGCTCGGCAAGGGCCACTTCGCAGAGCTGGATTTCTGAAAGCTTTGCTTGATTTTCAAATATTCTTTAGTAAAGAATGTCTTTGTGGCATTGTTC 1 1 1 0.945022483912395 Y Y 3.49015970162987 3.55334927718654 3.49015970162987 0 0.990947940947941 0.00427350427350426 Y 0.990947940947941 N N 0 60 ENSMUSG00000021718 ENSMUSG00000021720 + + 13 13 105121782 105271039 downstream intron 4933425L06Rik Rnf180 105082122 105149352 + - 0 105131562 105167527 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 0.78424606692708 0.974366325576069 0.974366325576069 0.78424606692708 1 - - 0.813708699275449 +12092 TGCCCAATGAGCTGCTGGCACTCAGCACAGGTGTTGGCGAAGGTGTTGTCATAGCACGGAACGCAGTAGGGGCCACTGTCTGTCTGGATGTATTTGCGGCCGTACAAGGACTCGTTGCATTTTGCACAGTCAAATGCCTCGCTCATGGTGGCGGTGCCCAGTGAGC|CCTCAAACTCAAGAAGCCCCATCTCAGTCGGTCTTCTTACTTTGCAAGAGTTTTCAAAGGACTGCGCTGGGTCTCTTCTGCCAAGCGGCTCATGGCTTCCTCTGGGTGCTGAATCATTCTCTGGTGCCTGCAACCACAAGACCTCCTTCC 2 1 0.16313785091306 0.240986946418107 Y Y 3.43784458057793 3.48805370929674 3.43784458057793 0 0.99335436382755 0.00315457413249232 Y 0 N N 2072 0 ENSMUSG00000032643 ENSMUSG00000088067 - - 4 4 124708611 124697607 utr5p downstream Fhl3 U6 124700701 124697505 + - 0 124705614 124696071 - + N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 9 1.21993832633101 1.18825161655618 1.21993832633101 1.18825161655618 1 - - 0.736022708835765 +11605 CTCCACACCACAGCGTCACCGATGTCCAGCGCTTTCGAGCCGGCACACAGCTGTTGCAGAAGACTACAGGGGTGGGATCCGAGCTGGGAATGTAGAAGGAGGAACAGCGGCCAAAACAGAGATGATTAAGGACCCGGGCACTTGTGCAACCAGGCCTGGAGATCACCTGC|GCCGTACGGACTAAAGCAGCGCGGCGCTCCTCCGCTCCCCGGCCGGAGGCCCCCGGTGTTTCCGCCGCGCAGGCAGCGCCGTAGCCAGCCCCGCTGCCGCGAGGACCCACAGCCAAG 11 0.982340211125991 0.568397069242315 0.586452494205497 Y Y 3.57167229721571 3.28292550416853 3.28292550416853 0 0 0 Y 0.770032051282051 N N 167 2428 ENSMUSG00000053226 ENSMUSG00000033751 - - 8 8 84822823 84835482 intron utr5p Dand5 Gadd45gip1 84815405 84831522 - + 0 84816537 84832174 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 12 1.26746839099326 0.990209680463485 1.26746839099326 0.990209680463485 2 - - 0.758045795414889 +7456 AAATTCTGGAGTCAGTTCTGGAGACATAGATAGCTCCCAAATTATAACCAACCCTCTTCCTCCCGTGGCCTCCCCTCCTCCTGCATCTAAAGCAAAGGAAGTTTCCGATGGGGAAAATCTCGAGCAAGATCTATGTACGTTCTTGATATCAAGAGCCTGTAAGAACTCAACACTGGCTAATTATTTATACTGG|TCACTTTTACTCTGCTATTCCCCTATCTATGCTCCGAAAATCATTCTGACTCCTGCAATGACCCCTATTACCCAGATTTTGAAGATACTCCCTGCTATCTACTCAGCTCTGAAGACTTG 9 1 0.674019218743678 0.827309111200933 N N 3.64400585547602 3.3012485241977 3.3012485241977 0 0 0 N 0 N N 1791 0 ENSMUSG00000033628 ENSMUSG00000056822 + - 18 16 30348126 19487830 coding downstream Pik3c3 Olfr166 30272747 19486793 + + 0 30311220 19493776 + - Y - - N dataset_6344_files 1 1 1 1 0 1 N N 0 1 10 1.37837187520517 0.942679615801238 1.37837187520517 0.942679615801238 1 - - 0.745013975183866 +2385 CGGGACGGGGCGGGGCCGGCGAACTTCTGTGCCTCACTGTCCCCGGACACTGAGGGACACCGGGCAGGCAGCTGGCACCATGAAGATCTGGACTTCGGAGCACGTCTTTGAC|TACATCCGGTTTTCCCAGATCTGTGCAAAAGCAGTGAGGGATGCCCTGAAGACCGAGTTCAAAGCGAACGCTGAGAAGACTTCGGGCAGCAGCATAAAAATTGTGAAAGTCTCGAAGAAGGAGTAGCTGAATCTGAAGCCTGAAGTGCTGAGTCTTGAA 7 1 0.168340481582645 0.162692865850249 Y Y 3.69784855983781 3.60831833727406 3.60831833727406 0 0 0 Y 0 N Y 3085 3617 ENSMUSG00000016257 ENSMUSG00000016252 + - 2 2 174473081 174464105 coding coding Slmo2 Atp5e 174465067 174461072 - - 0 174472832 174462629 - + N - - N dataset_6344_files 2 0.190909090909091 1.2 1 1 1 Y Y 0.190909090909091 0 5 0.871384518807867 1.29915510076809 1.29915510076809 0.871384518807867 4 - - 0.7622459420951 +13923 AGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGAACGACGGTGATAAAGGTTCCCGTAAAGCAGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTCATCAG|CCAGAGTCGGCGCTCTCCGGCGAGCTATCCCCTTCTCACCACACTCTGAGAACGGAGCTTGGTGCCGGCTCGGCCGCCTCCGCCAATTCCGGGTCCCTCTTCA 4 0.0503617839630236 0.900541946891923 0.647988756014038 N Y 3.6988816296077 3.47080361183081 3.47080361183081 0 0.980668063812497 0 N 0.980668063812497 N N 590 367 ENSMUSG00000046079 ENSMUSG00000051671 - - 5 8 105832436 126425434 intron upstream Lrrc8d 1810063B05Rik 105699969 126422501 + + 0 105728723 126422269 - - Y - - N dataset_6344_files 10 0.968503937007874 8 4 7 1 N N 0.968503937007874 0 7 0.974366325576069 0.617890840609215 0.974366325576069 0.617890840609215 4 - - 0.812231785796686 +11177 ATCTGACAGAACTTGCCACTGTGCCTGCAACCTTGTCTGAGAGGAA|CCCTTCTCTGAGGATGGACACTTCTCACACTACAAAGTCCTGTTTGCTGATTCTTCTTGTGGCCCTACTGTGTGCAGAAAGAGCTCAGGGACTGGAGTGTTACCAGTGCTATGGAGTCCCATTTGAGACTTCTTGCCCATCAATTACCTGCCCCTACCCTGATGGAGTCTGTGTTACTCAGGAGGCAGCAGTTATTGTGGATTCTCAAACAAGGA 434 0.873359569934578 0.121885088610831 0.552181129473186 Y Y 3.55081912933034 3.43784458057793 3.43784458057793 0 0 0.00381679389312994 Y 0.956687686691006 N Y 1416 5049 ENSMUSG00000079018 ENSMUSG00000075602 + - 15 15 75048837 74997634 utr5p utr5p Ly6c1 Ly6a 75045017 74994878 - - 0 75048442 74996568 - + N - - N dataset_6344_files 2 0 1.65079365079365 1 41 2 Y Y 0 0 63 0.665420905271462 1.36252852031776 1.36252852031776 0.665420905271462 4 - - 0.566839236883877 +3839 GTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGGGTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT|GATATGTCAAGAACCTACTGATCCTCACAAGAACCTACTGTCTCTCTTCTCTTGACTGAAAACAAAAGTCTTCTTCTACCTGACCCGTGGCCTGACTTCTGGAAGAATGCATATGGACTTTCGAAGAAGTCAGAGGATATCTGCTGGCCACTTGTATCAGACAAAACAAGGCTGGTGAGCA 13 1 0.804385830976137 0.0961220231684031 Y Y 3.42779550918039 3.49697642496855 3.42779550918039 0 0 0 Y 0.993649362117881 N N 3895 0 ENSMUSG00000052534 ENSMUSG00000093538 + + 1 1 168432270 168122465 coding intron Pbx1 Gm20711 168153527 168115244 - + 0 168183530 168121480 - + N - - N dataset_6344_files 1 0.745098039215686 1 1 0 1 N Y 0 0.745098039215686 16 1.29915510076809 1.21201664888731 1.29915510076809 1.21201664888731 4 - - 0.97679698937665 +66 CTGAGAACGAGGAGCAGGAAGAACACACCAGCATGGGCGCGTTCAACGATCCGTTCCTGGCTCAGCCCCCCGATGAAGATTCACATTCCAGTTTTCCTGATGGTGAACAAATAGACCCTGAAAATCTCCACTTCAACCCTGATGAAGGAGGTGGA|AGACTGCTTGTTCTTGGAACCCAGCAGCCATACTGTGAGGAAGTCCAAACCAGCCAACCTGGAGAGACGGCATGCACAGGGTCCCACGGATA 13 0.719595391393931 0.399734668051015 0.808813953308524 Y Y 3.39487633072086 3.67849247003875 3.39487633072086 0 0 0 Y 0.989174263674614 N N 1514 627 ENSMUSG00000018548 ENSMUSG00000046442 + + 11 11 87220683 87359023 coding intron Trim37 Ppm1e 87127077 87226906 + - 0 87218328 87250589 + - N - - N dataset_6344_files 1 1 1 1 0 1 N Y 0 1 11 0.863462841364159 0.689185937602586 0.863462841364159 0.689185937602586 1 - - 0.615916282680748 +11601 GGCACTGGGAACCCGAGCGCAGCTTGGACAAGTGGACTGCACGCAGCGCCTGCCTGGTCTTTCACACTTCTCTGGGGACCTCAGGAGAGGAAGGAAGACTTTTGGATATGG|GGTGCTTCGAGTGCTGCATTAAATGCCTGGGAGGTATTCCCTATGCTTCTCTGATTGCAACCATCCTGCTGTATGCAGGCGTTGCCCTGTTCTGTGGCTGTGGCCATGAAGCCCTTTCTGGAACAGTCAACATTCTGCAGACCTACTTTGAGTTGGCAAGGACTGCTG 45 1 0.903984782676282 0.890308208832683 Y Y 3.25993583872649 3.64553343878587 3.25993583872649 0 0 0 Y 0.991023166023166 N N 195 2438 ENSMUSG00000039375 ENSMUSG00000031517 - - 8 8 54887184 55060877 intron coding Wdr17 Gpm6a 54629055 54954728 - + 0 54779650 55037328 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 33 0.887227873695282 1.25162503610584 1.25162503610584 0.887227873695282 4 - - 0.961094875436964 +11202 CAAACACGTCCTGGAGCAAGGCCTCCACAGCCACGGGGTCCCCATCCAGGGTCCTGAGTGGTTTTGAGTCAGCCATCAGGATGAAATCTTCCAGCTCAGGAGGGCTCAGAGAAGGATCAGACGAGCTGGTGACAAGGTACACAATGGACTTTTCAGAATAGGG|CTGGACTGCTTATTCCTTTAGAAGCAAGGTCTCTTCCCCAACCTGGGGCTCTAATTTTCTCAGTTAAGGTGGAATCCAGCAAGTCCAGGGGATTCTCCAGTCTCCACCTTTGTCAGAGCAGGCTTGTTAACC 21 1 0.362314658679907 0.288186846563607 Y Y 3.57167229721571 3.6035982586987 3.57167229721571 0 0 0 Y 0.984899672399672 N N 1306 3566 ENSMUSG00000023044 ENSMUSG00000046897 - - 15 15 102189043 102215606 utr5p upstream Csad Zfp740 102176998 102203648 - + 0 102188962 102202444 + - N - - N dataset_6344_files 1 0.961240310077519 1 1 0 3 N Y 0 0.961240310077519 10 1.21993832633101 1.02189639023832 1.21993832633101 1.02189639023832 4 - - 0.973142113883806 +9292 GGAGGTATCAAAGGACTTTTCAAAGGCGGTGATATGTCTAAGAATGTGAGTCAGTCACAGATGGCAAAATTAAACCAACAAATGGCCAAAATGATGGACCCACGAGTTCTTCATCACATG|GGAGGAGGAGGAGGAAGAAGAAAATAGGATGTCAGAAGAAGCAGAAAGACAATACCAACAAAACAAGCTGCAGGCCGATTCCATTGTACAGACAGACCAACCAGAAACAGTGTCGTCCAGCTTTGTAAATATTAATTTTGAAATGGAGGAAGACTGTGAAGCAATTAAG 13 0.627587070077396 0.568913321228002 0.464690965079815 N Y 3.57233464462502 2.71992636785275 2.71992636785275 0 0 0 Y 0.368850574712644 N Y 1463 391 ENSMUSG00000073079 ENSMUSG00000094103 + - 12 12 55112891 55214076 coding intron Srp54c 1700047I17Rik2 55089202 55199533 + + 0 55111181 55213840 + - N - - N dataset_6344_files 9 0 9 9 9 1 N N 0 0 9 0.93475793835753 1.17240826166877 1.17240826166877 0.93475793835753 4 - - 0.529926984288339 +8690 CTGGAGGAAAGCACCGCAGGTCTGAGCAGCCCTGAGCCGGGCAGGGTGGGGGCAGTGGCTAAGGCCTAGCTGGGGACGATTTAAAGGTATCGCGCCACCCAGCCACACCCCACAGGCCAGGCGAGGGTGCCACCCCCGGAGATCAGAGGTCATTGCTGGCGTTCAGA|GCCTAGGAAGTGGGCTGCGTTTCAGGGGGAAGTCCATGATCACCACGTGGCAACATGCAAGCGGGTGCTG 4 0.685704457350918 0.684620189710687 0.966832507460471 N Y 3.58424216889964 3.53768019619294 3.53768019619294 39 0.98577430972389 0.260264105642257 N 0.260264105642257 N N 4781 556 ENSMUSG00000032000 ENSMUSG00000016409 + - 9 X 7873186 37150746 utr5p intron Birc3 Nkap 7848699 37126795 - + 0 7872842 37143984 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.831776131589327 0.712950969933709 0.831776131589327 0.712950969933709 1 - - 0.520824161374586 +11497 CCTTTCCAGCGAGGTTCCAAGTTCTTAGTCTGGTGCCGGCGTACCCACACGGCGTCACCGACACGGAAGGGGTGTGGTATCACTGGCTGATCTAGCTGGTCCTGATAAGCAGCGGCCAGCGGCTTCCAGACCTCTCGTTGTACTGCTTGGAGGGCCTGTAAGTGAG|CTTCTCTTCTGGAAGTCGGACCAATTCACCTCAAGCACCAGAGCTTGAATTCATGATCATCCTGGACACAGCACTCATCAGGACCGCGCCGCGGCTGA 67 0.883499713768307 0.731092666993054 0.679758623906517 N Y 3.66336194527509 3.6508225788147 3.6508225788147 0 0.0444358875625721 0 N 0.94917212167886 N N 0 1604 ENSMUSG00000096832 ENSMUSG00000039007 - + 5 15 23711061 33594552 downstream intron SNORD93 Pgcp 23710991 33083129 - + 0 23703360 33221484 + + Y - - N dataset_6344_files 76 1 38.7730061349693 5 163 1 N N 1 0 163 1.34668516543034 0.760481034595956 1.34668516543034 0.760481034595956 4 - - 0.903135577741999 +8726 GAGCAAGCTGACAGCTGAGCAGAAGCTGAGCATGGACACCTTCAGATCCAACTCAGCGGACATCATTCTTTCTGCAGGGCGGCAAGAGCTCAAGAGCAAGCCAAGGCTGATAAGCATGAAGAGGATGGAGATGAGGAACAAGGCTCTGGAGTACTGGAGATAAT|CATGTCAGTTCGGCCGCGCAGGCGGGCTGCGTCGTCCTCGACGAGGCCTTTCGACGCTACCGTAACCTGCTCTTCGGTTCCGGCTCTTGGCCCCGACCCAGCTTCTCAAGTGAGTCACTGCCC 3 0.70117526311829 0.321035960603558 0.664396670389762 Y Y 3.42949092635959 3.29652844562235 3.29652844562235 0 0 0 Y 0 N N 44 8769 ENSMUSG00000049526 ENSMUSG00000025232 - - 9 9 59525501 59565105 coding coding Tmem202 Hexa 59518686 59539667 - + 0 59520238 59539868 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 1.02981806768202 0.744637679708541 1.02981806768202 0.744637679708541 4 - - 0.931447658206354 +5020 CAAACCATCATTTGTATTTTTCAAACTGTCTATCGAGCCTCAAACTCC|ACCATTTCATTTTCTGGTCTTCTATTCTAGCACCTACAACAAACAAATAGTTAAAGCTGCCCGGTTAGGCCCCTGACTCAGCACTTAAGATGGGGGAACCAGAGTCCACCAAATAGGGGGTAAATGCGTTAACGACCACTAGCTCCCACATATCAAAAACCAGCCTCCTCAGATACGCAGAAACAATGCCCTGACTTCAGAC 27 0.772639018637575 0.542772921402035 0.769655490407199 N Y 3.43152237077921 3.41592783769912 3.41592783769912 0 0.89624833997344 0 N 0.584993359893758 N N 0 0 ENSMUSG00000088422 ENSMUSG00000053332 - + 5 1 79639109 161038539 downstream intron 7SK Gas5 79638815 161034422 - + 0.89624833997344 79638362 161036581 + + Y - - N dataset_6344_files 1 0 1 1 0 3 N N 0 0 9 0.52283071128472 1.06942645490056 1.06942645490056 0.52283071128472 1 - - 0.818668251983994 +3184 CATTGGAGCTGTGGTGGCTTTTGTGATGAAGAGAAGGAGAAACACAGGTGGAAAAGGAGGGGACTATGCTCTGGCTCCAG|AGAACAGCGCCTGATGTTCCCTGTGAGCCTATGGGCTCAATGTGAAGAATTGTGGAGCCCAGCCTTCGCCTACACACCAGGACCCTGTCTCTGCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCGGGTCTGCAGTGGAAACTAAGGGTTCTTTGGAAAGTCGG 40 1 0.843266171585359 0.786568876550746 N Y 3.49424793801946 3.684245618384 3.49424793801946 0 0 0.551814516129032 Y 0.950201612903226 N Y 23545 2145 ENSMUSG00000073411 ENSMUSG00000035929 + - 17 17 35267499 35385290 coding utr3p H2-D1 H2-Q4 35262730 35379617 + + 0 35266514 35383995 + - N - - N dataset_6344_files 4 0.22972972972973 2.57142857142857 2 7 1 N N 0 0.22972972972973 7 0.562439098503259 1.03773974512573 1.03773974512573 0.562439098503259 4 - - 0.85501289117385 +9158 CCGAATTTCAACCTCCTTATCAACAGTGGGATCTTCAAAGAGTTGTACCCTGAAGTTGCTCTTTCTCAGTGGAGTCCCACACTCAGGACAGTTTCCAGCTCCTCTTACAAACAGTAAGTCCACACAACTCTCACAC|CTTCCCCACCAGCCTGGTCCGGCTGCCCACCTCTCCCCGCCCCCCACCTCGCTTCCCTACCGGGGTGGTAGGGGGGACGACGGTGGCAACGAGCGGGCGGGGGATCCTCCC 5 1 0.770112168741176 0.964592797110167 Y Y 3.1490579347374 3.11232376639641 3.11232376639641 0 0 0 Y 0 N N 1882 677 ENSMUSG00000021103 ENSMUSG00000034460 - - 12 12 73273988 73114037 coding intron Mnat1 Six4 73123717 73099609 + - 0 73168000 73112254 - + N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 1.0060530353509 0.78424606692708 1.0060530353509 0.78424606692708 4 - - 0.934413835802699 +1851 GCTGCAGGTGGGCTTATTCTACCATTGCTACTGTTCTGTCTTTGAAGATGTTCTTTATAGCATACTGAACACATGCCATTTGTACGAGGGTTTCCATAAAATCCGCAGCCAGTGGAGCAAAGCATAGGTGCTTGGCTGTGATTAGTTTCTTGAGCCATGTTCTTCTGTTGCA|CACCTGGCGGCGGCCCTCTCCGCCGGACGCGCTGCCGCCGCCGCCTCTCGCCGCCGCTGAGAGTGAGGACAGGTGAGGCCGCCAAACCCCCACTCGCTCCCGGCCCGCCGCCGCCGGCCCTCCGTCCGC 21 0.826443478467522 0.547250352165575 0.543160934834641 Y Y 3.38908332958226 2.95732075160099 2.95732075160099 0 0 0 Y 0.992273730684327 N N 1944 1 ENSMUSG00000030629 ENSMUSG00000085236 - - 7 7 84679361 84776549 utr5p intron Zfand6 2610206C17Rik 84615054 84689640 - + 0 84634406 84689743 + - N - - N dataset_6344_files 2 0.159420289855072 1.04878048780488 1 2 1 N Y 0 0.159420289855072 41 1.14864322933764 1.09319148723169 1.14864322933764 1.09319148723169 1 - - 0.715005473321084 +9962 CTGCGGCCCGCCGGGTCCCGGAGCCCACTGCCCCAGCACCCCGCGCTCGGCGCCCGCAGACGGCGCGGACCTCAGCGCGCACTTATGGGCTCGTTACCAGGACATGCGGAGGCTGGTGCACG|ACCTTCTGCCCCCTGAGGTCTGCAGCCTCCTAAACCCAGCAGCTATTTATGCCAACAATGAGATCAGCCTGAGTGACGTCGAAGTCTATGGCTTTGACTACGACTACACGCTGGCCCAGTATGCGGATGCACTGCACCCTGAGATCTTCAATGCTGCCCGGGACATCTTGATAGAGC 93 0.0971360740885943 0.213119196903586 0.467950871740144 Y Y 3.71720464963688 3.27448372166755 3.27448372166755 0 0.983661202185792 0 Y 0.991830601092896 N N 211 4122 ENSMUSG00000058351 ENSMUSG00000071547 - - 14 14 31128930 31139121 upstream upstream 2010107H07Rik Nt5dc2 31088869 31134853 - + 0 31131376 31134739 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 33 1.1011131646754 0.808011099258204 1.1011131646754 0.808011099258204 4 - - 0.743419539119423 +12549 TTGGAGATGCCAGTACCATGAGATGACCACCAAGAGCAGCAGCAGCAGTGGAGTACAGGCATCTGGAGCCTAGAGGATGACACATGTGCTACAAAGGGCCTGGCTGGAGAAGTGACCCAAGCCCTTGGAGGAGCCCAGAAGATC|GTCCATCCTGATAAAAATCACCATCCCCGGGCTGAGGAGGCCTTCAAAATTTTGCGGGCAGCTTGGGACATTGTCAGCAACCCAGAGAGGCGGAAGGAATATGAGATGAAACGGAT 18 1 0.96278392593137 0.394484707065412 N Y 3.2808195118354 3.46448140203209 3.2808195118354 1 0.965649359228432 0 N 0.974237019421324 N Y 1732 2437 ENSMUSG00000039307 ENSMUSG00000025354 + - 11 10 121222655 128819446 utr5p coding Hexdc Dnajc14 121204433 128805676 + + 0 121206748 128814038 + - Y - - N dataset_6344_files 3 0.993103448275862 1.72222222222222 1 11 1 N N 0.993103448275862 0 18 1.14864322933764 0.879306196251575 1.14864322933764 0.879306196251575 4 - - 0.927135541379163 +3179 CTGGAGCAGTCCCCGTGACGCCGGGTGGCGACTGGCTCCCGGGTCTGAGGGGCTTCTGCTTGTCAGGTTCT|AGATATGTGCTGACTAGCAGGCTCACGTGCACAGTGTGGAGGATAAGCTATATCTTACAAAATGGGATTTGGGAGTGACCTGAAGAACTCACAGGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACGGTTGCTGGAGACAGTGAAGAAATTTATGGCTCTGAG 10 1 0.557528435226891 0.364482194613623 Y Y 3.15741158895574 3.54759612884129 3.15741158895574 0 0.985974921257503 0 Y 0.873774291317525 N N 10 1325 ENSMUSG00000045506 ENSMUSG00000000127 - - 17 17 63863791 64139494 upstream upstream A930002H24Rik Fer 63863300 63896018 - + 0 63864053 63896016 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 7 0.499065678953596 1.12487819700652 1.12487819700652 0.499065678953596 3 - - 0.767822892174251 diff -r 2cbb285cc54e -r 2ecf82136986 test-data/mm10_results.filtered.vcf --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mm10_results.filtered.vcf Fri Aug 09 11:19:26 2013 -0500 @@ -0,0 +1,106 @@ +##fileformat=VCFv4.1 +##source=defuse +##reference=mm10 +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO +1 106734547 bnd_4068_1 A A]16:37799068] 233 PASS SVTYPE=BND;MATEID=bnd_4068_2;DP=19;SPLITCNT=8;SPANCNT=11;GENE=Kdsr,Fstl1;GENEID=ENSMUSG00000009905,ENSMUSG00000022816;HOMLEN=2;SPLICESCORE=4 +1 127753955 bnd_3783_1 T T]1:127773930] 181 PASS SVTYPE=BND;MATEID=bnd_3783_2;DP=8;SPLITCNT=2;SPANCNT=6;GENE=Acmsd,Ccnt2;GENEID=ENSMUSG00000026348,ENSMUSG00000026349;HOMLEN=0;SPLICESCORE=3 +1 127773930 bnd_3783_2 T [1:127753955[T 181 PASS SVTYPE=BND;MATEID=bnd_3783_1;DP=8;SPLITCNT=2;SPANCNT=6;GENE=Acmsd,Ccnt2;GENEID=ENSMUSG00000026348,ENSMUSG00000026349;HOMLEN=0;SPLICESCORE=3 +1 161036581 bnd_5020_2 A [5:79638362[A 208 PASS SVTYPE=BND;MATEID=bnd_5020_1;DP=36;SPLITCNT=27;SPANCNT=9;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;HOMLEN=0;SPLICESCORE=1 +1 161036831 bnd_4912_2 G ]5:79638354]G 151 PASS SVTYPE=BND;MATEID=bnd_4912_1;DP=20;SPLITCNT=15;SPANCNT=5;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;HOMLEN=0;SPLICESCORE=1 +1 168121480 bnd_3839_2 G ]1:168183530]G 249 PASS SVTYPE=BND;MATEID=bnd_3839_1;DP=29;SPLITCNT=13;SPANCNT=16;GENE=Pbx1,Gm20711;GENEID=ENSMUSG00000052534,ENSMUSG00000093538;HOMLEN=0;SPLICESCORE=4 +1 168183530 bnd_3839_1 T T[1:168121480[ 249 PASS SVTYPE=BND;MATEID=bnd_3839_2;DP=29;SPLITCNT=13;SPANCNT=16;GENE=Pbx1,Gm20711;GENEID=ENSMUSG00000052534,ENSMUSG00000093538;HOMLEN=0;SPLICESCORE=4 +2 165827729 bnd_5326_1 C C]18:4198107] 136 PASS SVTYPE=BND;MATEID=bnd_5326_2;DP=20;SPLITCNT=7;SPANCNT=13;GENE=Zmynd8,Gm10557;GENEID=ENSMUSG00000039671,ENSMUSG00000073647;HOMLEN=9;SPLICESCORE=1 +2 174462629 bnd_2385_2 T ]2:174472832]T 194 PASS SVTYPE=BND;MATEID=bnd_2385_1;DP=12;SPLITCNT=7;SPANCNT=5;GENE=Slmo2,Atp5e;GENEID=ENSMUSG00000016257,ENSMUSG00000016252;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND +2 174472832 bnd_2385_1 C C[2:174462629[ 194 PASS SVTYPE=BND;MATEID=bnd_2385_2;DP=12;SPLITCNT=7;SPANCNT=5;GENE=Slmo2,Atp5e;GENEID=ENSMUSG00000016257,ENSMUSG00000016252;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND +3 103040040 bnd_5160_1 C C]18:28188917] 213 PASS SVTYPE=BND;MATEID=bnd_5160_2;DP=63;SPLITCNT=33;SPANCNT=30;GENE=Csde1,SNORA17;GENEID=ENSMUSG00000068823,ENSMUSG00000087940;HOMLEN=91;SPLICESCORE=3 +3 144201813 bnd_8647_1 T T]5:149198645] 242 PASS SVTYPE=BND;MATEID=bnd_8647_2;DP=9;SPLITCNT=4;SPANCNT=5;GENE=Lmo4,Uspl1;GENEID=ENSMUSG00000028266,ENSMUSG00000041264;HOMLEN=1;SPLICESCORE=4;EXONBND +4 124696071 bnd_12092_2 C ]4:124705614]C 187 PASS SVTYPE=BND;MATEID=bnd_12092_1;DP=11;SPLITCNT=2;SPANCNT=9;GENE=Fhl3,U6;GENEID=ENSMUSG00000032643,ENSMUSG00000088067;HOMLEN=0;SPLICESCORE=1 +4 124705614 bnd_12092_1 C C[4:124696071[ 187 PASS SVTYPE=BND;MATEID=bnd_12092_2;DP=11;SPLITCNT=2;SPANCNT=9;GENE=Fhl3,U6;GENEID=ENSMUSG00000032643,ENSMUSG00000088067;HOMLEN=0;SPLICESCORE=1 +4 148948907 bnd_12095_1 C C]4:148961548] 249 PASS SVTYPE=BND;MATEID=bnd_12095_2;DP=11;SPLITCNT=6;SPANCNT=5;GENE=Gm13205,Pex14;GENEID=ENSMUSG00000086606,ENSMUSG00000028975;HOMLEN=0;SPLICESCORE=4 +4 148961548 bnd_12095_2 C [4:148948907[C 249 PASS SVTYPE=BND;MATEID=bnd_12095_1;DP=11;SPLITCNT=6;SPANCNT=5;GENE=Gm13205,Pex14;GENEID=ENSMUSG00000086606,ENSMUSG00000028975;HOMLEN=0;SPLICESCORE=4 +5 23703360 bnd_11497_1 G G[15:33221484[ 230 PASS SVTYPE=BND;MATEID=bnd_11497_2;DP=230;SPLITCNT=67;SPANCNT=163;GENE=SNORD93,Pgcp;GENEID=ENSMUSG00000096832,ENSMUSG00000039007;HOMLEN=0;SPLICESCORE=4 +5 60176541 bnd_1721_2 G ]11:106187103]G 188 PASS SVTYPE=BND;MATEID=bnd_1721_1;DP=13;SPLITCNT=8;SPANCNT=5;GENE=Strada,Cbfa2t2-ps1;GENEID=ENSMUSG00000069631,ENSMUSG00000087034;HOMLEN=142;SPLICESCORE=1 +5 79638354 bnd_4912_1 A A]1:161036831] 151 PASS SVTYPE=BND;MATEID=bnd_4912_2;DP=20;SPLITCNT=15;SPANCNT=5;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;HOMLEN=0;SPLICESCORE=1 +5 79638362 bnd_5020_1 C C[1:161036581[ 208 PASS SVTYPE=BND;MATEID=bnd_5020_2;DP=36;SPLITCNT=27;SPANCNT=9;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;HOMLEN=0;SPLICESCORE=1 +5 105728723 bnd_13923_1 G G]8:126422269] 207 PASS SVTYPE=BND;MATEID=bnd_13923_2;DP=11;SPLITCNT=4;SPANCNT=7;GENE=Lrrc8d,1810063B05Rik;GENEID=ENSMUSG00000046079,ENSMUSG00000051671;HOMLEN=0;SPLICESCORE=4 +5 149198645 bnd_8647_2 G ]3:144201813]G 242 PASS SVTYPE=BND;MATEID=bnd_8647_1;DP=9;SPLITCNT=4;SPANCNT=5;GENE=Lmo4,Uspl1;GENEID=ENSMUSG00000028266,ENSMUSG00000041264;HOMLEN=1;SPLICESCORE=4;EXONBND +6 51467295 bnd_12868_1 A A]10:73201702] 132 PASS SVTYPE=BND;MATEID=bnd_12868_2;DP=110;SPLITCNT=69;SPANCNT=41;GENE=Hnrnpa2b1,Gm15398;GENEID=ENSMUSG00000004980,ENSMUSG00000085456;HOMLEN=0;SPLICESCORE=1 +6 52158684 bnd_7746_1 G G]6:52173634] 190 PASS SVTYPE=BND;MATEID=bnd_7746_2;DP=46;SPLITCNT=26;SPANCNT=20;GENE=Gm15051,Gm15050;GENEID=ENSMUSG00000087658,ENSMUSG00000087626;HOMLEN=0;SPLICESCORE=2 +6 52173634 bnd_7746_2 A [6:52158684[A 190 PASS SVTYPE=BND;MATEID=bnd_7746_1;DP=46;SPLITCNT=26;SPANCNT=20;GENE=Gm15051,Gm15050;GENEID=ENSMUSG00000087658,ENSMUSG00000087626;HOMLEN=0;SPLICESCORE=2 +7 28376683 bnd_1870_1 C C]7:28392166] 214 PASS SVTYPE=BND;MATEID=bnd_1870_2;DP=10;SPLITCNT=2;SPANCNT=8;GENE=Zfp36,Med29;GENEID=ENSMUSG00000044786,ENSMUSG00000003444;HOMLEN=4;SPLICESCORE=1 +7 28392166 bnd_1870_2 C [7:28376683[C 214 PASS SVTYPE=BND;MATEID=bnd_1870_1;DP=10;SPLITCNT=2;SPANCNT=8;GENE=Zfp36,Med29;GENEID=ENSMUSG00000044786,ENSMUSG00000003444;HOMLEN=4;SPLICESCORE=1 +7 66355922 bnd_12600_2 C [10:24597524[C 148 PASS SVTYPE=BND;MATEID=bnd_12600_1;DP=6;SPLITCNT=1;SPANCNT=5;GENE=Ctgf,Lrrk1;GENEID=ENSMUSG00000019997,ENSMUSG00000015133;HOMLEN=0;SPLICESCORE=3 +7 84634406 bnd_1851_1 A A]7:84689743] 182 PASS SVTYPE=BND;MATEID=bnd_1851_2;DP=62;SPLITCNT=21;SPANCNT=41;GENE=Zfand6,2610206C17Rik;GENEID=ENSMUSG00000030629,ENSMUSG00000085236;HOMLEN=0;SPLICESCORE=1 +7 84689743 bnd_1851_2 C [7:84634406[C 182 PASS SVTYPE=BND;MATEID=bnd_1851_1;DP=62;SPLITCNT=21;SPANCNT=41;GENE=Zfand6,2610206C17Rik;GENEID=ENSMUSG00000030629,ENSMUSG00000085236;HOMLEN=0;SPLICESCORE=1 +7 90125032 bnd_1855_1 T T]7:90129872] 242 PASS SVTYPE=BND;MATEID=bnd_1855_2;DP=13;SPLITCNT=4;SPANCNT=9;GENE=AC130210.1,Picalm;GENEID=ENSMUSG00000097162,ENSMUSG00000039361;HOMLEN=0;SPLICESCORE=4 +7 90129872 bnd_1855_2 C [7:90125032[C 242 PASS SVTYPE=BND;MATEID=bnd_1855_1;DP=13;SPLITCNT=4;SPANCNT=9;GENE=AC130210.1,Picalm;GENEID=ENSMUSG00000097162,ENSMUSG00000039361;HOMLEN=0;SPLICESCORE=4 +7 97788974 bnd_1886_1 G G]7:97854436] 247 PASS SVTYPE=BND;MATEID=bnd_1886_2;DP=36;SPLITCNT=18;SPANCNT=18;GENE=Aqp11,Pak1;GENEID=ENSMUSG00000042797,ENSMUSG00000030774;HOMLEN=0;SPLICESCORE=4 +7 97854436 bnd_1886_2 T [7:97788974[T 247 PASS SVTYPE=BND;MATEID=bnd_1886_1;DP=36;SPLITCNT=18;SPANCNT=18;GENE=Aqp11,Pak1;GENEID=ENSMUSG00000042797,ENSMUSG00000030774;HOMLEN=0;SPLICESCORE=4 +8 54779650 bnd_11601_1 G G]8:55037328] 245 PASS SVTYPE=BND;MATEID=bnd_11601_2;DP=78;SPLITCNT=45;SPANCNT=33;GENE=Wdr17,Gpm6a;GENEID=ENSMUSG00000039375,ENSMUSG00000031517;HOMLEN=0;SPLICESCORE=4 +8 55037328 bnd_11601_2 G [8:54779650[G 245 PASS SVTYPE=BND;MATEID=bnd_11601_1;DP=78;SPLITCNT=45;SPANCNT=33;GENE=Wdr17,Gpm6a;GENEID=ENSMUSG00000039375,ENSMUSG00000031517;HOMLEN=0;SPLICESCORE=4 +8 84816537 bnd_11605_1 C C]8:84832174] 193 PASS SVTYPE=BND;MATEID=bnd_11605_2;DP=23;SPLITCNT=11;SPANCNT=12;GENE=Dand5,Gadd45gip1;GENEID=ENSMUSG00000053226,ENSMUSG00000033751;HOMLEN=0;SPLICESCORE=2 +8 84832174 bnd_11605_2 G [8:84816537[G 193 PASS SVTYPE=BND;MATEID=bnd_11605_1;DP=23;SPLITCNT=11;SPANCNT=12;GENE=Dand5,Gadd45gip1;GENEID=ENSMUSG00000053226,ENSMUSG00000033751;HOMLEN=0;SPLICESCORE=2 +8 95682960 bnd_11596_2 G ]8:95739809]G 222 PASS SVTYPE=BND;MATEID=bnd_11596_1;DP=24;SPLITCNT=8;SPANCNT=16;GENE=Cnot1,Ndrg4;GENEID=ENSMUSG00000036550,ENSMUSG00000036564;HOMLEN=0;SPLICESCORE=1 +8 95739809 bnd_11596_1 A A[8:95682960[ 222 PASS SVTYPE=BND;MATEID=bnd_11596_2;DP=24;SPLITCNT=8;SPANCNT=16;GENE=Cnot1,Ndrg4;GENEID=ENSMUSG00000036550,ENSMUSG00000036564;HOMLEN=0;SPLICESCORE=1 +8 126422269 bnd_13923_2 C ]5:105728723]C 207 PASS SVTYPE=BND;MATEID=bnd_13923_1;DP=11;SPLITCNT=4;SPANCNT=7;GENE=Lrrc8d,1810063B05Rik;GENEID=ENSMUSG00000046079,ENSMUSG00000051671;HOMLEN=0;SPLICESCORE=4 +9 7872842 bnd_8690_1 A A]X:37143984] 132 PASS SVTYPE=BND;MATEID=bnd_8690_2;DP=9;SPLITCNT=4;SPANCNT=5;GENE=Birc3,Nkap;GENEID=ENSMUSG00000032000,ENSMUSG00000016409;HOMLEN=39;SPLICESCORE=1 +9 21320850 bnd_8748_2 A ]9:21337962]A 189 PASS SVTYPE=BND;MATEID=bnd_8748_1;DP=103;SPLITCNT=51;SPANCNT=52;GENE=Slc44a2,Ap1m2;GENEID=ENSMUSG00000057193,ENSMUSG00000003309;HOMLEN=2;SPLICESCORE=2 +9 21337962 bnd_8748_1 C C[9:21320850[ 189 PASS SVTYPE=BND;MATEID=bnd_8748_2;DP=103;SPLITCNT=51;SPANCNT=52;GENE=Slc44a2,Ap1m2;GENEID=ENSMUSG00000057193,ENSMUSG00000003309;HOMLEN=2;SPLICESCORE=2 +9 59520238 bnd_8726_1 T T]9:59539868] 237 PASS SVTYPE=BND;MATEID=bnd_8726_2;DP=8;SPLITCNT=3;SPANCNT=5;GENE=Tmem202,Hexa;GENEID=ENSMUSG00000049526,ENSMUSG00000025232;HOMLEN=0;SPLICESCORE=4 +9 59539868 bnd_8726_2 C [9:59520238[C 237 PASS SVTYPE=BND;MATEID=bnd_8726_1;DP=8;SPLITCNT=3;SPANCNT=5;GENE=Tmem202,Hexa;GENEID=ENSMUSG00000049526,ENSMUSG00000025232;HOMLEN=0;SPLICESCORE=4 +9 108783870 bnd_8762_1 G G]9:108796064] 243 PASS SVTYPE=BND;MATEID=bnd_8762_2;DP=36;SPLITCNT=28;SPANCNT=8;GENE=SNORA28,Ip6k2;GENEID=ENSMUSG00000088626,ENSMUSG00000032599;HOMLEN=0;SPLICESCORE=4 +9 108796064 bnd_8762_2 A [9:108783870[A 243 PASS SVTYPE=BND;MATEID=bnd_8762_1;DP=36;SPLITCNT=28;SPANCNT=8;GENE=SNORA28,Ip6k2;GENEID=ENSMUSG00000088626,ENSMUSG00000032599;HOMLEN=0;SPLICESCORE=4 +10 24597524 bnd_12600_1 G G]7:66355922] 148 PASS SVTYPE=BND;MATEID=bnd_12600_2;DP=6;SPLITCNT=1;SPANCNT=5;GENE=Ctgf,Lrrk1;GENEID=ENSMUSG00000019997,ENSMUSG00000015133;HOMLEN=0;SPLICESCORE=3 +10 73201702 bnd_12868_2 A ]6:51467295]A 132 PASS SVTYPE=BND;MATEID=bnd_12868_1;DP=110;SPLITCNT=69;SPANCNT=41;GENE=Hnrnpa2b1,Gm15398;GENEID=ENSMUSG00000004980,ENSMUSG00000085456;HOMLEN=0;SPLICESCORE=1 +10 128814038 bnd_12549_2 G [11:121206748[G 236 PASS SVTYPE=BND;MATEID=bnd_12549_1;DP=36;SPLITCNT=18;SPANCNT=18;GENE=Hexdc,Dnajc14;GENEID=ENSMUSG00000039307,ENSMUSG00000025354;HOMLEN=1;SPLICESCORE=4;EXONBND +11 52099150 bnd_1027_1 G G]12:54980379] 212 PASS SVTYPE=BND;MATEID=bnd_1027_2;DP=12;SPLITCNT=2;SPANCNT=10;GENE=Ppp2ca,Baz1a;GENEID=ENSMUSG00000020349,ENSMUSG00000035021;HOMLEN=3;SPLICESCORE=4 +11 87218328 bnd_66_1 A A]11:87250589] 157 PASS SVTYPE=BND;MATEID=bnd_66_2;DP=24;SPLITCNT=13;SPANCNT=11;GENE=Trim37,Ppm1e;GENEID=ENSMUSG00000018548,ENSMUSG00000046442;HOMLEN=0;SPLICESCORE=1 +11 87250589 bnd_66_2 A [11:87218328[A 157 PASS SVTYPE=BND;MATEID=bnd_66_1;DP=24;SPLITCNT=13;SPANCNT=11;GENE=Trim37,Ppm1e;GENEID=ENSMUSG00000018548,ENSMUSG00000046442;HOMLEN=0;SPLICESCORE=1 +11 106187103 bnd_1721_1 A A[5:60176541[ 188 PASS SVTYPE=BND;MATEID=bnd_1721_2;DP=13;SPLITCNT=8;SPANCNT=5;GENE=Strada,Cbfa2t2-ps1;GENEID=ENSMUSG00000069631,ENSMUSG00000087034;HOMLEN=142;SPLICESCORE=1 +11 121206748 bnd_12549_1 C C]10:128814038] 236 PASS SVTYPE=BND;MATEID=bnd_12549_2;DP=36;SPLITCNT=18;SPANCNT=18;GENE=Hexdc,Dnajc14;GENEID=ENSMUSG00000039307,ENSMUSG00000025354;HOMLEN=1;SPLICESCORE=4;EXONBND +12 54980379 bnd_1027_2 T [11:52099150[T 212 PASS SVTYPE=BND;MATEID=bnd_1027_1;DP=12;SPLITCNT=2;SPANCNT=10;GENE=Ppp2ca,Baz1a;GENEID=ENSMUSG00000020349,ENSMUSG00000035021;HOMLEN=3;SPLICESCORE=4 +12 55111181 bnd_9292_1 G G]12:55213840] 135 PASS SVTYPE=BND;MATEID=bnd_9292_2;DP=22;SPLITCNT=13;SPANCNT=9;GENE=Srp54c,1700047I17Rik2;GENEID=ENSMUSG00000073079,ENSMUSG00000094103;HOMLEN=0;SPLICESCORE=4;EXONBND +12 55213840 bnd_9292_2 G [12:55111181[G 135 PASS SVTYPE=BND;MATEID=bnd_9292_1;DP=22;SPLITCNT=13;SPANCNT=9;GENE=Srp54c,1700047I17Rik2;GENEID=ENSMUSG00000073079,ENSMUSG00000094103;HOMLEN=0;SPLICESCORE=4;EXONBND +12 73112254 bnd_9158_2 C ]12:73168000]C 238 PASS SVTYPE=BND;MATEID=bnd_9158_1;DP=10;SPLITCNT=5;SPANCNT=5;GENE=Mnat1,Six4;GENEID=ENSMUSG00000021103,ENSMUSG00000034460;HOMLEN=0;SPLICESCORE=4 +12 73168000 bnd_9158_1 C C[12:73112254[ 238 PASS SVTYPE=BND;MATEID=bnd_9158_2;DP=10;SPLITCNT=5;SPANCNT=5;GENE=Mnat1,Six4;GENEID=ENSMUSG00000021103,ENSMUSG00000034460;HOMLEN=0;SPLICESCORE=4 +12 113422730 bnd_9297_1 T T]12:113426655] 212 PASS SVTYPE=BND;MATEID=bnd_9297_2;DP=26;SPLITCNT=20;SPANCNT=6;GENE=Ighm,AC073553.3;GENEID=ENSMUSG00000076617,ENSMUSG00000092748;HOMLEN=0;SPLICESCORE=4 +12 113426655 bnd_9297_2 C [12:113422730[C 212 PASS SVTYPE=BND;MATEID=bnd_9297_1;DP=26;SPLITCNT=20;SPANCNT=6;GENE=Ighm,AC073553.3;GENEID=ENSMUSG00000076617,ENSMUSG00000092748;HOMLEN=0;SPLICESCORE=4 +13 105131562 bnd_5983_1 T T]13:105167527] 207 PASS SVTYPE=BND;MATEID=bnd_5983_2;DP=6;SPLITCNT=1;SPANCNT=5;GENE=4933425L06Rik,Rnf180;GENEID=ENSMUSG00000021718,ENSMUSG00000021720;HOMLEN=0;SPLICESCORE=1 +13 105167527 bnd_5983_2 C [13:105131562[C 207 PASS SVTYPE=BND;MATEID=bnd_5983_1;DP=6;SPLITCNT=1;SPANCNT=5;GENE=4933425L06Rik,Rnf180;GENEID=ENSMUSG00000021718,ENSMUSG00000021720;HOMLEN=0;SPLICESCORE=1 +14 31131376 bnd_9962_1 G G]14:31134739] 189 PASS SVTYPE=BND;MATEID=bnd_9962_2;DP=126;SPLITCNT=93;SPANCNT=33;GENE=2010107H07Rik,Nt5dc2;GENEID=ENSMUSG00000058351,ENSMUSG00000071547;HOMLEN=0;SPLICESCORE=4 +14 31134739 bnd_9962_2 A [14:31131376[A 189 PASS SVTYPE=BND;MATEID=bnd_9962_1;DP=126;SPLITCNT=93;SPANCNT=33;GENE=2010107H07Rik,Nt5dc2;GENEID=ENSMUSG00000058351,ENSMUSG00000071547;HOMLEN=0;SPLICESCORE=4 +15 33221484 bnd_11497_2 C [5:23703360[C 230 PASS SVTYPE=BND;MATEID=bnd_11497_1;DP=230;SPLITCNT=67;SPANCNT=163;GENE=SNORD93,Pgcp;GENEID=ENSMUSG00000096832,ENSMUSG00000039007;HOMLEN=0;SPLICESCORE=4 +15 74996568 bnd_11177_2 C ]15:75048442]C 144 PASS SVTYPE=BND;MATEID=bnd_11177_1;DP=497;SPLITCNT=434;SPANCNT=63;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND +15 74996568 bnd_11169_2 A ]15:75048442]A 237 PASS SVTYPE=BND;MATEID=bnd_11169_1;DP=702;SPLITCNT=410;SPANCNT=292;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND +15 75048442 bnd_11177_1 A A[15:74996568[ 144 PASS SVTYPE=BND;MATEID=bnd_11177_2;DP=497;SPLITCNT=434;SPANCNT=63;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND +15 75048442 bnd_11169_1 G G[15:74996568[ 237 PASS SVTYPE=BND;MATEID=bnd_11169_2;DP=702;SPLITCNT=410;SPANCNT=292;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND +15 102188962 bnd_11202_1 G G]15:102202444] 248 PASS SVTYPE=BND;MATEID=bnd_11202_2;DP=31;SPLITCNT=21;SPANCNT=10;GENE=Csad,Zfp740;GENEID=ENSMUSG00000023044,ENSMUSG00000046897;HOMLEN=0;SPLICESCORE=4 +15 102202444 bnd_11202_2 C [15:102188962[C 248 PASS SVTYPE=BND;MATEID=bnd_11202_1;DP=31;SPLITCNT=21;SPANCNT=10;GENE=Csad,Zfp740;GENEID=ENSMUSG00000023044,ENSMUSG00000046897;HOMLEN=0;SPLICESCORE=4 +16 19493776 bnd_7456_2 T [18:30311220[T 189 PASS SVTYPE=BND;MATEID=bnd_7456_1;DP=19;SPLITCNT=9;SPANCNT=10;GENE=Pik3c3,Olfr166;GENEID=ENSMUSG00000033628,ENSMUSG00000056822;HOMLEN=0;SPLICESCORE=1 +16 37799068 bnd_4068_2 T ]1:106734547]T 233 PASS SVTYPE=BND;MATEID=bnd_4068_1;DP=19;SPLITCNT=8;SPANCNT=11;GENE=Kdsr,Fstl1;GENEID=ENSMUSG00000009905,ENSMUSG00000022816;HOMLEN=2;SPLICESCORE=4 +17 17395298 bnd_3153_1 C C]17:17411818] 206 PASS SVTYPE=BND;MATEID=bnd_3153_2;DP=41;SPLITCNT=16;SPANCNT=25;GENE=AC154200.1,Lix1;GENEID=ENSMUSG00000097379,ENSMUSG00000047786;HOMLEN=0;SPLICESCORE=1 +17 17411818 bnd_3153_2 T [17:17395298[T 206 PASS SVTYPE=BND;MATEID=bnd_3153_1;DP=41;SPLITCNT=16;SPANCNT=25;GENE=AC154200.1,Lix1;GENEID=ENSMUSG00000097379,ENSMUSG00000047786;HOMLEN=0;SPLICESCORE=1 +17 35266514 bnd_3184_1 G G]17:35383995] 218 PASS SVTYPE=BND;MATEID=bnd_3184_2;DP=47;SPLITCNT=40;SPANCNT=7;GENE=H2-D1,H2-Q4;GENEID=ENSMUSG00000073411,ENSMUSG00000035929;HOMLEN=0;SPLICESCORE=4;EXONBND +17 35383995 bnd_3184_2 A [17:35266514[A 218 PASS SVTYPE=BND;MATEID=bnd_3184_1;DP=47;SPLITCNT=40;SPANCNT=7;GENE=H2-D1,H2-Q4;GENEID=ENSMUSG00000073411,ENSMUSG00000035929;HOMLEN=0;SPLICESCORE=4;EXONBND +17 63864053 bnd_3179_1 T T]17:63896016] 195 PASS SVTYPE=BND;MATEID=bnd_3179_2;DP=17;SPLITCNT=10;SPANCNT=7;GENE=A930002H24Rik,Fer;GENEID=ENSMUSG00000045506,ENSMUSG00000000127;HOMLEN=0;SPLICESCORE=3 +17 63896016 bnd_3179_2 A [17:63864053[A 195 PASS SVTYPE=BND;MATEID=bnd_3179_1;DP=17;SPLITCNT=10;SPANCNT=7;GENE=A930002H24Rik,Fer;GENEID=ENSMUSG00000045506,ENSMUSG00000000127;HOMLEN=0;SPLICESCORE=3 +18 4198107 bnd_5326_2 G ]2:165827729]G 136 PASS SVTYPE=BND;MATEID=bnd_5326_1;DP=20;SPLITCNT=7;SPANCNT=13;GENE=Zmynd8,Gm10557;GENEID=ENSMUSG00000039671,ENSMUSG00000073647;HOMLEN=9;SPLICESCORE=1 +18 28188917 bnd_5160_2 A [3:103040040[A 213 PASS SVTYPE=BND;MATEID=bnd_5160_1;DP=63;SPLITCNT=33;SPANCNT=30;GENE=Csde1,SNORA17;GENEID=ENSMUSG00000068823,ENSMUSG00000087940;HOMLEN=91;SPLICESCORE=3 +18 30311220 bnd_7456_1 G G]16:19493776] 189 PASS SVTYPE=BND;MATEID=bnd_7456_2;DP=19;SPLITCNT=9;SPANCNT=10;GENE=Pik3c3,Olfr166;GENEID=ENSMUSG00000033628,ENSMUSG00000056822;HOMLEN=0;SPLICESCORE=1 +18 53932206 bnd_5141_1 T T[X:53418862[ 201 PASS SVTYPE=BND;MATEID=bnd_5141_2;DP=26;SPLITCNT=9;SPANCNT=17;GENE=Csnk1g3,Gm14584;GENEID=ENSMUSG00000073563,ENSMUSG00000083798;HOMLEN=266;SPLICESCORE=2 +19 37678397 bnd_13800_1 C C]19:37696729] 204 PASS SVTYPE=BND;MATEID=bnd_13800_2;DP=15;SPLITCNT=3;SPANCNT=12;GENE=Exoc6,Cyp26a1;GENEID=ENSMUSG00000053799,ENSMUSG00000024987;HOMLEN=0;SPLICESCORE=1 +19 37696729 bnd_13800_2 A [19:37678397[A 204 PASS SVTYPE=BND;MATEID=bnd_13800_1;DP=15;SPLITCNT=3;SPANCNT=12;GENE=Exoc6,Cyp26a1;GENEID=ENSMUSG00000053799,ENSMUSG00000024987;HOMLEN=0;SPLICESCORE=1 +X 37143984 bnd_8690_2 G ]9:7872842]G 132 PASS SVTYPE=BND;MATEID=bnd_8690_1;DP=9;SPLITCNT=4;SPANCNT=5;GENE=Birc3,Nkap;GENEID=ENSMUSG00000032000,ENSMUSG00000016409;HOMLEN=39;SPLICESCORE=1 +X 53418862 bnd_5141_2 A ]18:53932206]A 201 PASS SVTYPE=BND;MATEID=bnd_5141_1;DP=26;SPLITCNT=9;SPANCNT=17;GENE=Csnk1g3,Gm14584;GENEID=ENSMUSG00000073563,ENSMUSG00000083798;HOMLEN=266;SPLICESCORE=2