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Define defuse.results.tsv ext as subclass of tabular, add defuse_results_to_vcf to generate vcf form DeFuse results
author Jim Johnson <jj@umn.edu>
date Fri, 09 Aug 2013 11:19:26 -0500
parents 1bc79c9d6165
children
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## Configurstion info for prepared data references for DeFuse
## http://sourceforge.net/apps/mediawiki/defuse/index.php?title=DeFuse_Version_0.6.0
## 4 columns separated by the TAB character
## The 4th column has the path to the defuse config.txt file, it needs to have the dataset_directory set the directory path where the defuse reference data resides.
## The defuse galaxy tool  will substitute the directory path of config.txt if the dataset_directory property is not set '__DATASET_DIRECTORY__'
#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>
GRCh37	GRCh37	Human GRCh37 (hg19)	/depot/GRCh37/defuse/GRCh37.config