Mercurial > repos > jjohnson > defuse
view test-data/mm10_results.filtered.tsv @ 25:2ecf82136986
Define defuse.results.tsv ext as subclass of tabular, add defuse_results_to_vcf to generate vcf form DeFuse results
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 09 Aug 2013 11:19:26 -0500 |
| parents | |
| children |
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cluster_id splitr_sequence splitr_count splitr_span_pvalue splitr_pos_pvalue splitr_min_pvalue adjacent altsplice break_adj_entropy1 break_adj_entropy2 break_adj_entropy_min breakpoint_homology breakseqs_estislands_percident cdna_breakseqs_percident deletion est_breakseqs_percident eversion exonboundaries expression1 expression2 gene1 gene2 gene_align_strand1 gene_align_strand2 gene_chromosome1 gene_chromosome2 gene_end1 gene_end2 gene_location1 gene_location2 gene_name1 gene_name2 gene_start1 gene_start2 gene_strand1 gene_strand2 genome_breakseqs_percident genomic_break_pos1 genomic_break_pos2 genomic_strand1 genomic_strand2 interchromosomal interrupted_index1 interrupted_index2 inversion library_name max_map_count max_repeat_proportion mean_map_count min_map_count num_multi_map num_splice_variants orf read_through repeat_proportion1 repeat_proportion2 span_count span_coverage1 span_coverage2 span_coverage_max span_coverage_min splice_score splicing_index1 splicing_index2 probability 8647 GTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGGCACGTCCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAAATGACTACATTAGGT|GAAGATTGTAAAAAATTGACATCAGAAATATTTACAGAAATAGATACCTGTTTGAATAAAGTTAGAGATGAAATTTTTGCTAAACTTCAACCGAAGCTTAGATGCACATTAGGTGACATGGAAAGTCCTGTGTTTGCACTTCCTG 4 0.849232794977309 0.875860929877954 0.794775556794258 N N 3.72551845106187 3.02448896101185 3.02448896101185 1 0.0366733649981732 0 N 0 N Y 2482 2085 ENSMUSG00000028266 ENSMUSG00000041264 + - 3 5 144205220 149215434 coding coding Lmo4 Uspl1 144188530 149184350 - + 0 144201813 149198645 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.831776131589327 0.982288003019777 0.982288003019777 0.831776131589327 4 - - 0.950339354539546 12095 CTTCCAGGGTCCCCCGAGCCTAATGGATGCCGAGACAGACGAGGGCATGGACTATACAGGCTGTAGCCCTGGAGCGGCGTCCTCAGAGTCTTCCACCATGGACCGTAGCTGTTCCAGCACCC|CTGGCCCTTGACATCTAGCACCCCTTCACCCTCTTCCTGGGGACCCAGCAGGTGGTATGTGGCCGTGGAGCCCTCCGGGCTGTGGCTGTCCTTCCCAGGAGAGGATGACGTAGACTCGTTGCTGACAGGGGAGATGTCACTGCTGC 6 0.869976758916331 0.907802910133282 0.774396849342807 Y Y 3.64400585547602 3.28189243439864 3.28189243439864 0 0.983667499542934 0 Y 0 N N 0 1453 ENSMUSG00000086606 ENSMUSG00000028975 - + 4 4 148948914 149099876 intron coding Gm13205 Pex14 148947492 148960535 - - 0 148948907 148961548 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 0.760481034595956 1.02189639023832 1.02189639023832 0.760481034595956 4 - - 0.976704594819493 4068 CGACACGCCGGGGCTGGCTGAGGAAAACAAAACGAAGCCCCTGGAGACCCGGCTTATCTCAGAGACCACAGCTATTTGCAAACCAGAGCAGGTGGCCAAACAAATTGTCAAAGATGCCATA|TACCGTTCCCCAGCTGAAGAGTTCTGAATCCACGCCGGATCCTTCTCAACAGTCTGTTTTACGGGAACTTTTATTAACCACTCCTTCCCCGTGATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCACTCATGCCTGAAGATGTTTCTTTTCC 8 1 0.541521196503195 0.26082452496772 N Y 3.46128890676658 3.81976875220098 3.46128890676658 2 0 0 N 0.794128973014604 N N 775 35409 ENSMUSG00000009905 ENSMUSG00000022816 + - 1 16 106759742 37836514 coding intron Kdsr Fstl1 106720410 37776873 - + 0.00358422939068104 106734547 37799068 - - Y - - N dataset_6344_files 4 1 1.81818181818182 1 4 1 N N 0 1 11 0.974366325576069 1.17240826166877 1.17240826166877 0.974366325576069 4 - - 0.913877182950088 12868 GCGGTCTCGGCTCCAGCGGCAGTAGCAGCGGCGCCGGTCCCGTGTGCAGGAGCTCCTTTGCGGCCCAGTTTCTTGGCCATCGCCTGCTCTCCCCACAGCGCCAGGACGAGTCCCGTGCGCGTCCGTCCGCGGAGGTCTTTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGA|AAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAAAACTT 69 1 0.439895614069599 0.332872660216425 N Y 3.30124852419771 2.96787791690762 2.96787791690762 0 0.0997837503861599 0.00401606425702794 N 0.540315106580167 N N 41631 0 ENSMUSG00000004980 ENSMUSG00000085456 + + 6 10 51469894 73327027 coding intron Hnrnpa2b1 Gm15398 51460434 73201399 - - 0.0997837503861599 51467295 73201702 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 41 1.14864322933764 0.720872647377417 1.14864322933764 0.720872647377417 1 - - 0.520098627306064 5160 TACGGATTCATTCAGTGTTCAGAACGGCAAGCTAGACTTTTCTTCCACTGTTCACAATATAATGGCAACCTCCAAGACTTAAAAGTAGGAGATGATGTTGAATTTGAAGTATCATCTGACCGGAGGACTGGGAAACCTATTGCTATTAAATTGGTGAAGATAAAACCAGAAATACATCCTGAAGAACGAATGAACGGAC|AAGAAGTATTTTATCTGACTTACACCCCTGAAGATGTGGAAGGGAAAGTTCAGC 33 1 0.767323324767952 0.471361574015707 N Y 3.3022815939676 3.55553920790569 3.3022815939676 91 0.944663167104112 0.00393700787401585 N 0.944663167104112 N N 10681 0 ENSMUSG00000068823 ENSMUSG00000087940 + - 3 18 103058189 28309891 coding upstream Csde1 SNORA17 103020546 28309760 + + 0 103040040 28188917 + - Y - - N dataset_6344_files 2 0 1.03333333333333 1 1 1 N N 0 0 30 1.1011131646754 0.67334258271517 1.1011131646754 0.67334258271517 3 - - 0.835626866413202 8748 GGGGTAGATCACCTTCCGAGGGTCTCCATGGGTCCAGGCTATGATGCCCACAGCCACATAGCCTACGATGGCCAGGAAGAGCAACACACAGCAAATGACATCTGTGCATCCCCTGTTGTAAATGGGTCCTTTGAAGGTGGGGTCGTATTTCTGAGGCGTCCC|ATAGACTGCGTCCTTCCGATCGTCCTCCATGGCCTCAACCGAGGAGAGCTGAGTCCGAAGCCAGCGCGACCCCAACCCAAGCGGGCGGGAGACACCGCGCGCTGCTGGCCCCGCC 51 1 0.844316325604616 0.871821260113135 Y Y 3.29447165365238 3.73336824417043 3.29447165365238 2 0 0 Y 0.991335627150454 N N 6343 2 ENSMUSG00000057193 ENSMUSG00000003309 - - 9 9 21355025 21312333 coding upstream Slc44a2 Ap1m2 21337828 21295457 + - 0 21337962 21320850 - + N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 52 1.3070767782118 0.958522970688653 1.3070767782118 0.958522970688653 2 - - 0.74403558965543 11169 CCACATCTGACAGAACTTGCCACTGTGCCTGCAACCTTGTCTGAGAGGAACCCTTCTCTG|AGGATGGACACTTCTCACACTACAAAGTCCTGTTTGCTGATTCTTCTTGTGGCCCTACTGTGTGCAGAAAGAGCTCAGGGACTGGAGTGTTACCAGTGCTATGGAGTCCCATTTGAGACTTCTTGCCCATCAATTACCTGCCCCTACCCTGATGGAGTCTGTGTTACTCAGGAGGCAGCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAGAACAATCTTTGCTTACCC 410 1 0.87136611677351 0.978590093310325 Y Y 3.45293525254824 3.55976477294109 3.45293525254824 0 0 0.152910958904109 Y 0.966780821917808 N Y 1416 5049 ENSMUSG00000079018 ENSMUSG00000075602 + - 15 15 75048837 74997634 utr5p utr5p Ly6c1 Ly6a 75045017 74994878 - - 0 75048442 74996568 - + N - - N dataset_6344_files 2 0 1.53082191780822 1 155 2 Y Y 0 0 292 0.728794324821125 1.49719703686079 1.49719703686079 0.728794324821125 4 - - 0.93076564160702 12600 CTAAAATCGCCAAGCCTGTCAAGTTTGAGCTTTCTGGCTGCACCAGTGTGAAGACATACAGGGCTAAGTTCTGCGGGGTGTGCACAGACGGCCGCTGCTGCACACCGCACAGAACCACCACTCTGCCAGTGGAGTTCAAATGCCCCGATGGCGAGATCATGAAAAAGAATATGATGTTCATCAAG|CCCTGCCCCTGCCATTACCACTGTTCTGGGGTCCCTGGCATGCTCCCATTAC 1 1 0.820229055260519 0.873212995139997 N N 3.28548615724827 3.17936818462789 3.17936818462789 0 0.482950872656755 0.482950872656755 N 0.482950872656755 N N 7298 2735 ENSMUSG00000019997 ENSMUSG00000015133 + + 10 7 24598683 66388350 coding intron Ctgf Lrrk1 24595442 66226912 + - 0.482950872656755 24597524 66355922 + - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 1.02981806768202 0.41192722707281 1.02981806768202 0.41192722707281 3 - - 0.58275607356487 1855 CCTGGTCACACAGCTCTCCTAGGAAGCGCGTCTCCAATGACTCGTTTGTCAACCCCAGGTGTCTTCCACGTTGTGGTTTCAACTTCATAATTCTCTGAAGTCTTATTCAT|CTCTTTGTCAAGCCCACGGCGTCAGCCTCTGACACGAGGGCGGGCGTCCTCGCCTCCGGGGTGAAAGAGGGGCGCAGCGGGCCGCCCCTCCCCCCCGCCCCCCTACGACACGCGGGGCCCTGCCTCGGGCGACCTGTTGGCAGGGCGCGTCACGTGACGCGGCGGGCCGCGCCGTCCCC 4 0.769054178023969 0.159736089157399 0.42467594723228 Y Y 3.40528677690917 3.51935717616377 3.40528677690917 0 0.981880877742947 0 Y 0.0487460815047023 N N 0 8476 ENSMUSG00000097162 ENSMUSG00000039361 - - 7 7 90129474 90209447 intron upstream AC130210.1 Picalm 90124858 90130232 - + 0 90125032 90129872 + - N - - N dataset_6344_files 1 0.23489932885906 1 1 0 1 N Y 0 0.23489932885906 9 0.887227873695282 1.18032993911247 1.18032993911247 0.887227873695282 4 - - 0.949188379753168 1870 CTGGGTCAAGAGCCGGAGGGACAGGACCAGAGCACCCCTTACGCCAGAACTAGCTCTCCTTGTTCCTACTGGGTGACCTCATCTCGCCACGCCTCCTCAGGTGAACACCCGGGCTGGTAACGTCACTTCCTGC|CAGGGTTTCACTATGTAGACCCTGGTCGGCCTGGAACTCTATAGACCAGACTGGCCTCGAGCTCAGATCCGTCCCCCTCTGCTGTCCCAGCACGGGGATTAAGAACGCGCCACCACTACAGCTGACCGGA 2 0.788660184540219 0.550050944563454 0.182990959521483 Y Y 3.63552422018169 3.63193049733206 3.63193049733206 4 0 0 Y 0 N N 1543 697 ENSMUSG00000044786 ENSMUSG00000003444 - + 7 7 28379255 28392708 downstream intron Zfp36 Med29 28376784 28386146 - - 0 28376683 28392166 + - N - - N dataset_6344_files 1 0.869158878504673 1 1 0 1 N Y 0 0.869158878504673 8 1.08526980978798 0.847619486476743 1.08526980978798 0.847619486476743 1 - - 0.841318537051835 3153 CAGAGCTATGTAGAAAGACCCTGTCTGGTAAGTAAATAAAAACATAGCCAGGCATGGTGGCAATCAGCAGGTAGATTGGAGTTTGAGGTCATCCTGGTCTGGAGAGTGAGTTCCAGGAGAGCCAAGATTACACAAACCC|TGTCTTTTTCTTTCTTTCTGTTGTTGTTGTTGCTGTTCCTGCTGCTGCTGCTGTTTTGCTTTTCATGACAGGGTTTCTCTGTGTCTCTGTGCAACTTTGGCTATCCTGGAATTCACACTGTAGACCAGGCTGGCCTTGAATTCACACAGATCCATCTG 16 1 0.656277930324132 0.671834466829468 Y Y 3.40740634961144 2.41484814640267 2.41484814640267 0 0.9928298971561 0 Y 0.985659794312201 N N 0 30 ENSMUSG00000097379 ENSMUSG00000047786 - - 17 17 17395303 17459387 intron intron AC154200.1 Lix1 17389943 17402672 - + 0 17395298 17411818 + - N - - N dataset_6344_files 1 0.709459459459459 1 1 0 1 N Y 0.685314685314685 0.709459459459459 25 1.13279987445023 1.17240826166877 1.17240826166877 1.13279987445023 1 - - 0.81041504882724 11596 GCCGGAGCAGATCAGGCTGAAAGTTGGTGGTGTGGACCCAAAGCAGCTAGCCGTCTATGAAGAGTTTGCACGAAATGTGCCTGGCTTCTTACCTACAAATGACTTAAGTCAGCCTACAGGGTTTTTAGCTCAGCCCATGAA|GTTTCTGGATCAAGATGTGAGCTTTCAGCTGTTGCTTGAGCATCATGCCTGCCTGCCTGCCACCACGCTCTCGGCCAGGATAGTGATGGATTCCTTCCCTCGGACTATAAGCCCCAAATGAACCCTTCCTTCTATGAGTTGCCT 8 0.974101244860941 0.684001003266195 0.530048089286902 N Y 3.49640736351508 3.32783191248938 3.32783191248938 0 0 0 Y 0 N N 6004 544 ENSMUSG00000036550 ENSMUSG00000036564 + + 8 8 95807462 95715119 coding intron Cnot1 Ndrg4 95719451 95676980 - + 0 95739809 95682960 - + N - - N dataset_6344_files 1 1 1 1 0 1 N N 0 1 16 1.12487819700652 1.17240826166877 1.17240826166877 1.12487819700652 1 - - 0.873952352979217 3783 CTCTGTTCGTGCATCCCTGGGATATGCAGATGGATGGACGAATGGCCAAATACTGGCTGCCTTGGCTCGTAGGTTTGTGCTGGACTAGGGTTGGGAACACAGCACCAACTCTTGGGTTTTTTCTGTTATCCATGGAATTCTGTTCT|TTTCTTTCCGAGTGACCCCCACTTTACGGCGTCTCCCAATGACAAGAGGCGCAGAGCATTGTGGTCCCGCGGGTCCGAGA 2 0.867750583125795 0.425502304916607 0.692249690893423 Y Y 3.22804973003685 3.42048008240514 3.22804973003685 0 0 0 Y 0.987555066079295 N N 0 752 ENSMUSG00000026348 ENSMUSG00000026349 + - 1 1 127767564 127808061 intron upstream Acmsd Ccnt2 127729413 127774164 + + 0 127753955 127773930 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 6 1.02189639023832 0.649577550384046 1.02189639023832 0.649577550384046 3 - - 0.711778687837589 4912 TAACAGAACAAGAGCAATGTGCTAGAATAGAAGACCAGAAAATGAAATGGTGGAGTTTGA|GGCTGGATAGACAGTTTGAAAGGTAAGTATTGAAAAACACTTGAATTTGGGTCAGTACAAAGGGACATGCAGAGACTTTGAATCATCAAAACTCCAGCATGCATTGTCTTACGGATGTTTAGATAGGTGTGTTTTGGACAACACTCTGGGTTCTTGTAATGATGTTGATCAAATGTCTGAG 15 1 0.895469718833858 0.922600375157455 N Y 3.29868787111796 3.36447795254773 3.29868787111796 0 0.933608815426997 0 N 0.933608815426997 N N 0 0 ENSMUSG00000088422 ENSMUSG00000053332 + - 5 1 79639109 161038539 downstream intron 7SK Gas5 79638815 161034422 - + 0.933608815426997 79638354 161036831 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.459457291735057 0.808011099258204 0.808011099258204 0.459457291735057 1 - - 0.592482164323654 5141 TCTTATCTCTGTGTTGGTGTGCTTCTCTGTTTGATGACAGAGCAGGGTCTTGCTGAACTGCACCTACTGGAGTAGGCAACTGTTTACCAATCCAGTCATATTCATAATCAAACATATACCCTTTTCGATCAAACAAGTCAGTAAAAAGCTTTCTTAGGTAATCATAGTCTGGCTTTTCAAAAAAATCCAGCCTTCGTACGTAACGGAGAT|ACGTTGCCATTTCTGGGAAGTTCTCACACAACACTTCTATTGGTGTGGCTCGTTT 9 1 0.853164221793603 0.997416520640376 N Y 3.60831833727406 3.59847695253922 3.59847695253922 266 0.981886534518113 0.981886534518113 N 0.981886534518113 N N 2227 0 ENSMUSG00000073563 ENSMUSG00000083798 - + 18 X 53955684 53418967 coding intron Csnk1g3 Gm14584 53862113 53418331 + + 0 53932206 53418862 - + Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 17 1.2040949714436 0.990209680463485 1.2040949714436 0.990209680463485 2 - - 0.788432447586541 1886 CGCGGGGCGCCCGCCGGCTCACACTCCCGCGCTCTCTCTCCGGGTTTGGCGGCCGCCAGGAGGAGGAAGAGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGTGGAGCGAGCGCAGAAG|TAGCTGCTGCTGCTGGTGGTGACAATGTCAAATAACGGCGTAGACATCCAGGACAAACCCCCAGCCCCTCCGATGAGAAACACCAGCACTATGATTGGAGCCGGCAGCAAAGACACTGGAACCCTAAACCACGGCTCCAAACCTCTGCCTCCAAACCCAGAGGAG 18 1 0.708948431161152 0.783431002546196 Y Y 2.65454686157692 3.52101274054962 2.65454686157692 0 0.983110527572213 0 Y 0.983110527572213 N N 16 2476 ENSMUSG00000042797 ENSMUSG00000030774 - - 7 7 97738247 97912381 upstream utr5p Aqp11 Pak1 97726379 97842935 - + 0 97788974 97854436 + - N - - N dataset_6344_files 1 0.366666666666667 1 1 0 1 N Y 0.366666666666667 0 18 0.950601293244945 1.29915510076809 1.29915510076809 0.950601293244945 4 - - 0.970255256454431 9297 GTGCTGGGCAGGAAGTCCCGGGCCAGGCAGCCCATGGCCACCAGATTCTTATCAGACAGGGGGCTCTCGCAGGAGACGAGGGGGAAGACATTTGGGAAGGACTGACTCT|CATTTGCGGTGCCTGGTTTCGGAGAGGTCCAGAGTCTTTGTGTGGAATTGTTCCTTCAAAGCCACCGAGGCTGGCTGGTCCATGAGCAGCCAGGTGGATGGGTGGCAGAAGCC 20 0.318065745640931 0.64026046146514 0.56228459372928 N Y 3.05166433869594 3.43614916339873 3.05166433869594 0 0 0 Y 0.990866828485621 N N 1488 0 ENSMUSG00000076617 ENSMUSG00000092748 - + 12 12 113422730 113425227 coding upstream Ighm AC073553.3 113418950 113425150 - - 0 113422730 113426655 + - N - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 6 0.665420905271462 0.879306196251575 0.879306196251575 0.665420905271462 4 - - 0.831715391282697 5326 GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCC|GAGTTACACAGTTTTAATGACTTCCTTACTTCTCATGATCTCTATACTGTTTAACTTTCCTCGGTGTGTTTTTAAGTCTTTGCTATCTTGTTCTAGTTTTTTGCAAGAATCACGAAAATGATTCTTGGATTTCCAGACTCTTCCTTTTGAAAGCTG 7 1 0.607242467201396 0.755062684986217 N Y 3.49744043328497 3.49528100778935 3.49528100778935 9 0.960654062340317 0 N 0.967211718616931 N N 2963 0 ENSMUSG00000039671 ENSMUSG00000073647 + + 2 18 165899016 4198969 utr3p downstream Zmynd8 Gm10557 165784152 4198216 - - 0.00979390223130638 165827729 4198107 - - Y - - N dataset_6344_files 476 0.993464052287582 298.461538461538 168 13 1 N N 0.993464052287582 0 13 1.21201664888731 1.34668516543034 1.34668516543034 1.21201664888731 1 - - 0.536685629613134 1721 CGTACCTCCCTCCCAGCAACCGGCCTGGCGGCAGCGCGGCTACAAAACTGAGGAGGCGGAGCCGAGACGGAGTCGGTACTGCGCTCTGACTCCTAGACCAGGTTTAAGTTTTTGAAGTTGAAGTAGGTCTACACAGTAGGAACCCATGTCTTTTCTTGTAAGTAAACCAGAGCGCATTA|GGGCCAATGAGGCGAGCTCAGAGTCCATAGCATTGTTCTCCAAACCA 8 0.903915350299452 0.697638501162383 0.785699237375327 N Y 3.65384724021086 3.68527868815389 3.65384724021086 142 0.936451401255975 0.343331146311745 N 0.936451401255975 N N 800 0 ENSMUSG00000069631 ENSMUSG00000087034 + + 11 5 106202168 60232198 coding upstream Strada Cbfa2t2-ps1 106163330 60231482 - + 0 106187103 60176541 - + Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.879306196251575 0.475300646622473 0.879306196251575 0.475300646622473 1 - - 0.738431070020728 1027 GCGGCAGCCGGTTCGGGCGGGCGGCATCATGGACGAGAAGTTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTCTCCGAGTCCCAGGTCAAGAGCCTCTGCGAGAAG|TGCTGCCTTTGACAGAGATGACATGCTTATACCATGCGGGTGGCACGAAGCTGTGAAGTGGTGATGACGGGGATGAGCTTGGACATCCTACGAGAGTGGCAAAGGTGAAGCAAGCCCAGGTGCTGGCTGTGCAAGG 2 1 0.148625497007208 0.21082086276253 N N 3.33524062522047 3.43039601505348 3.33524062522047 3 0 0 N 0 N N 10063 1785 ENSMUSG00000020349 ENSMUSG00000035021 + + 11 12 52127778 55014348 coding intron Ppp2ca Baz1a 52098681 54892989 + - 0 52099150 54980379 + - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 10 0.942679615801238 1.07734813234427 1.07734813234427 0.942679615801238 4 - - 0.83438414122479 7746 AAAGGGAGTCGAGACTGCCTTCTGCGCGCGCCCGGCTTTGCGCGCCTCCGCCACCAGATGTGGGGGGATGGGAGGCCCCCTCCGCGGCCCCTTCCCCACCCAGCCCAGAAAGCTGAACTGGCAAG|AGGCAATTTGAAACAAGCCACTCCAACCTCTTTTTCAAAGTTATAGGAGGTTCCCTGTCTTGAAGTCTCCTGCCTTGGATTTTCTGAGGTGCTGCTATTCTGGGCAACTATCAAAATCCTACCTGTTAAAACATGATGGATTAGAGAAAAAAAACAACCCAC 26 1 0.707412664952061 0.861438628736582 Y Y 3.14574680596571 3.22961716614005 3.14574680596571 0 0 0 Y 0 N N 0 0 ENSMUSG00000087658 ENSMUSG00000087626 + - 6 6 52162119 52174059 intron intron Gm15051 Gm15050 52156902 52172881 + + 0 52158684 52173634 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 20 1.02189639023832 1.23578168121843 1.23578168121843 1.02189639023832 2 - - 0.746044848941682 8762 GGGGGCGGGGCTGAGCGCGGCCGCAGCCATTTTGGTGGAAGAGAAACAATAGGACGGAAGCGTCGCGGGACTGGGCTGTGGCCGCAG|AGTGTCCTGGCCTGCACAAACCGAGGAGCTGAGATCAAACAGGTGGCTGTAAGGACAGACAGTGAACGGAGGGCAAGCCGGCCTCTGGACCCCGCTGCCTCCCCTTTCTCCCTGCTGCTCGTGTCCAGAGGATGAGCCCAGCCTTCAGGACCATGGACGTGGAGCCCCGCACCAAGGGCATCC 28 0.498252441818171 0.890426951441059 0.30351938174741 Y Y 3.55041790174621 3.58424216889964 3.55041790174621 0 0.977096322687365 0.0380455528693218 Y 0.977096322687365 N N 0 714 ENSMUSG00000088626 ENSMUSG00000032599 - - 9 9 108795388 108806333 downstream utr5p SNORA28 Ip6k2 108795243 108795994 - + 0 108783870 108796064 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 8 0.705029292490001 1.27539006843697 1.27539006843697 0.705029292490001 4 - - 0.953988239876003 13800 GATTGTTAGGGATGGGTCCTTGGTCAGCTGTCCAGAATGCTAGAGCTTCGTCCTCCTGGGAGATGGTTTCAGTCCTTACCCCCAGGACTCTGATGAGATCCTGAGGGAATCCACCCTCTGCTGATGGCCCAGTGAAAGCC|AGGCTCCGTGGCTTTACAGTGGATGGGATCTGGGAGAGTAGAGGGAAGGTTCTAGAACCCTGAAACCAGACCACTCTATTAGCGAACTCACAGCTGCCTTGTGGTGTAGAC 3 0.978409273957491 0.969552944230377 0.898574822628826 N Y 3.329991337985 3.51679652308403 3.329991337985 0 0 0 Y 0 N N 575 443 ENSMUSG00000053799 ENSMUSG00000024987 + - 19 19 37683245 37701528 intron upstream Exoc6 Cyp26a1 37550418 37697808 + + 0 37678397 37696729 + - N - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 12 0.839697809033035 0.855541163920451 0.855541163920451 0.839697809033035 1 - - 0.80116231284735 5983 CCATGTCAAACCACCATCCACGGCTGTCGTCCTCGAAGTGCAGGTAGTCCATCCTGTGAGCGCCGTGCGGGAACTGCCTCCGTGTCACTGGGGCGGCGCGCCTGTGGAAT|CCTCCGAAGAGATGGAATCCTTTCCTGCAGCTCGGCAAGGGCCACTTCGCAGAGCTGGATTTCTGAAAGCTTTGCTTGATTTTCAAATATTCTTTAGTAAAGAATGTCTTTGTGGCATTGTTC 1 1 1 0.945022483912395 Y Y 3.49015970162987 3.55334927718654 3.49015970162987 0 0.990947940947941 0.00427350427350426 Y 0.990947940947941 N N 0 60 ENSMUSG00000021718 ENSMUSG00000021720 + + 13 13 105121782 105271039 downstream intron 4933425L06Rik Rnf180 105082122 105149352 + - 0 105131562 105167527 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 0.78424606692708 0.974366325576069 0.974366325576069 0.78424606692708 1 - - 0.813708699275449 12092 TGCCCAATGAGCTGCTGGCACTCAGCACAGGTGTTGGCGAAGGTGTTGTCATAGCACGGAACGCAGTAGGGGCCACTGTCTGTCTGGATGTATTTGCGGCCGTACAAGGACTCGTTGCATTTTGCACAGTCAAATGCCTCGCTCATGGTGGCGGTGCCCAGTGAGC|CCTCAAACTCAAGAAGCCCCATCTCAGTCGGTCTTCTTACTTTGCAAGAGTTTTCAAAGGACTGCGCTGGGTCTCTTCTGCCAAGCGGCTCATGGCTTCCTCTGGGTGCTGAATCATTCTCTGGTGCCTGCAACCACAAGACCTCCTTCC 2 1 0.16313785091306 0.240986946418107 Y Y 3.43784458057793 3.48805370929674 3.43784458057793 0 0.99335436382755 0.00315457413249232 Y 0 N N 2072 0 ENSMUSG00000032643 ENSMUSG00000088067 - - 4 4 124708611 124697607 utr5p downstream Fhl3 U6 124700701 124697505 + - 0 124705614 124696071 - + N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 9 1.21993832633101 1.18825161655618 1.21993832633101 1.18825161655618 1 - - 0.736022708835765 11605 CTCCACACCACAGCGTCACCGATGTCCAGCGCTTTCGAGCCGGCACACAGCTGTTGCAGAAGACTACAGGGGTGGGATCCGAGCTGGGAATGTAGAAGGAGGAACAGCGGCCAAAACAGAGATGATTAAGGACCCGGGCACTTGTGCAACCAGGCCTGGAGATCACCTGC|GCCGTACGGACTAAAGCAGCGCGGCGCTCCTCCGCTCCCCGGCCGGAGGCCCCCGGTGTTTCCGCCGCGCAGGCAGCGCCGTAGCCAGCCCCGCTGCCGCGAGGACCCACAGCCAAG 11 0.982340211125991 0.568397069242315 0.586452494205497 Y Y 3.57167229721571 3.28292550416853 3.28292550416853 0 0 0 Y 0.770032051282051 N N 167 2428 ENSMUSG00000053226 ENSMUSG00000033751 - - 8 8 84822823 84835482 intron utr5p Dand5 Gadd45gip1 84815405 84831522 - + 0 84816537 84832174 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 12 1.26746839099326 0.990209680463485 1.26746839099326 0.990209680463485 2 - - 0.758045795414889 7456 AAATTCTGGAGTCAGTTCTGGAGACATAGATAGCTCCCAAATTATAACCAACCCTCTTCCTCCCGTGGCCTCCCCTCCTCCTGCATCTAAAGCAAAGGAAGTTTCCGATGGGGAAAATCTCGAGCAAGATCTATGTACGTTCTTGATATCAAGAGCCTGTAAGAACTCAACACTGGCTAATTATTTATACTGG|TCACTTTTACTCTGCTATTCCCCTATCTATGCTCCGAAAATCATTCTGACTCCTGCAATGACCCCTATTACCCAGATTTTGAAGATACTCCCTGCTATCTACTCAGCTCTGAAGACTTG 9 1 0.674019218743678 0.827309111200933 N N 3.64400585547602 3.3012485241977 3.3012485241977 0 0 0 N 0 N N 1791 0 ENSMUSG00000033628 ENSMUSG00000056822 + - 18 16 30348126 19487830 coding downstream Pik3c3 Olfr166 30272747 19486793 + + 0 30311220 19493776 + - Y - - N dataset_6344_files 1 1 1 1 0 1 N N 0 1 10 1.37837187520517 0.942679615801238 1.37837187520517 0.942679615801238 1 - - 0.745013975183866 2385 CGGGACGGGGCGGGGCCGGCGAACTTCTGTGCCTCACTGTCCCCGGACACTGAGGGACACCGGGCAGGCAGCTGGCACCATGAAGATCTGGACTTCGGAGCACGTCTTTGAC|TACATCCGGTTTTCCCAGATCTGTGCAAAAGCAGTGAGGGATGCCCTGAAGACCGAGTTCAAAGCGAACGCTGAGAAGACTTCGGGCAGCAGCATAAAAATTGTGAAAGTCTCGAAGAAGGAGTAGCTGAATCTGAAGCCTGAAGTGCTGAGTCTTGAA 7 1 0.168340481582645 0.162692865850249 Y Y 3.69784855983781 3.60831833727406 3.60831833727406 0 0 0 Y 0 N Y 3085 3617 ENSMUSG00000016257 ENSMUSG00000016252 + - 2 2 174473081 174464105 coding coding Slmo2 Atp5e 174465067 174461072 - - 0 174472832 174462629 - + N - - N dataset_6344_files 2 0.190909090909091 1.2 1 1 1 Y Y 0.190909090909091 0 5 0.871384518807867 1.29915510076809 1.29915510076809 0.871384518807867 4 - - 0.7622459420951 13923 AGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGAACGACGGTGATAAAGGTTCCCGTAAAGCAGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTCATCAG|CCAGAGTCGGCGCTCTCCGGCGAGCTATCCCCTTCTCACCACACTCTGAGAACGGAGCTTGGTGCCGGCTCGGCCGCCTCCGCCAATTCCGGGTCCCTCTTCA 4 0.0503617839630236 0.900541946891923 0.647988756014038 N Y 3.6988816296077 3.47080361183081 3.47080361183081 0 0.980668063812497 0 N 0.980668063812497 N N 590 367 ENSMUSG00000046079 ENSMUSG00000051671 - - 5 8 105832436 126425434 intron upstream Lrrc8d 1810063B05Rik 105699969 126422501 + + 0 105728723 126422269 - - Y - - N dataset_6344_files 10 0.968503937007874 8 4 7 1 N N 0.968503937007874 0 7 0.974366325576069 0.617890840609215 0.974366325576069 0.617890840609215 4 - - 0.812231785796686 11177 ATCTGACAGAACTTGCCACTGTGCCTGCAACCTTGTCTGAGAGGAA|CCCTTCTCTGAGGATGGACACTTCTCACACTACAAAGTCCTGTTTGCTGATTCTTCTTGTGGCCCTACTGTGTGCAGAAAGAGCTCAGGGACTGGAGTGTTACCAGTGCTATGGAGTCCCATTTGAGACTTCTTGCCCATCAATTACCTGCCCCTACCCTGATGGAGTCTGTGTTACTCAGGAGGCAGCAGTTATTGTGGATTCTCAAACAAGGA 434 0.873359569934578 0.121885088610831 0.552181129473186 Y Y 3.55081912933034 3.43784458057793 3.43784458057793 0 0 0.00381679389312994 Y 0.956687686691006 N Y 1416 5049 ENSMUSG00000079018 ENSMUSG00000075602 + - 15 15 75048837 74997634 utr5p utr5p Ly6c1 Ly6a 75045017 74994878 - - 0 75048442 74996568 - + N - - N dataset_6344_files 2 0 1.65079365079365 1 41 2 Y Y 0 0 63 0.665420905271462 1.36252852031776 1.36252852031776 0.665420905271462 4 - - 0.566839236883877 3839 GTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGGGTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT|GATATGTCAAGAACCTACTGATCCTCACAAGAACCTACTGTCTCTCTTCTCTTGACTGAAAACAAAAGTCTTCTTCTACCTGACCCGTGGCCTGACTTCTGGAAGAATGCATATGGACTTTCGAAGAAGTCAGAGGATATCTGCTGGCCACTTGTATCAGACAAAACAAGGCTGGTGAGCA 13 1 0.804385830976137 0.0961220231684031 Y Y 3.42779550918039 3.49697642496855 3.42779550918039 0 0 0 Y 0.993649362117881 N N 3895 0 ENSMUSG00000052534 ENSMUSG00000093538 + + 1 1 168432270 168122465 coding intron Pbx1 Gm20711 168153527 168115244 - + 0 168183530 168121480 - + N - - N dataset_6344_files 1 0.745098039215686 1 1 0 1 N Y 0 0.745098039215686 16 1.29915510076809 1.21201664888731 1.29915510076809 1.21201664888731 4 - - 0.97679698937665 66 CTGAGAACGAGGAGCAGGAAGAACACACCAGCATGGGCGCGTTCAACGATCCGTTCCTGGCTCAGCCCCCCGATGAAGATTCACATTCCAGTTTTCCTGATGGTGAACAAATAGACCCTGAAAATCTCCACTTCAACCCTGATGAAGGAGGTGGA|AGACTGCTTGTTCTTGGAACCCAGCAGCCATACTGTGAGGAAGTCCAAACCAGCCAACCTGGAGAGACGGCATGCACAGGGTCCCACGGATA 13 0.719595391393931 0.399734668051015 0.808813953308524 Y Y 3.39487633072086 3.67849247003875 3.39487633072086 0 0 0 Y 0.989174263674614 N N 1514 627 ENSMUSG00000018548 ENSMUSG00000046442 + + 11 11 87220683 87359023 coding intron Trim37 Ppm1e 87127077 87226906 + - 0 87218328 87250589 + - N - - N dataset_6344_files 1 1 1 1 0 1 N Y 0 1 11 0.863462841364159 0.689185937602586 0.863462841364159 0.689185937602586 1 - - 0.615916282680748 11601 GGCACTGGGAACCCGAGCGCAGCTTGGACAAGTGGACTGCACGCAGCGCCTGCCTGGTCTTTCACACTTCTCTGGGGACCTCAGGAGAGGAAGGAAGACTTTTGGATATGG|GGTGCTTCGAGTGCTGCATTAAATGCCTGGGAGGTATTCCCTATGCTTCTCTGATTGCAACCATCCTGCTGTATGCAGGCGTTGCCCTGTTCTGTGGCTGTGGCCATGAAGCCCTTTCTGGAACAGTCAACATTCTGCAGACCTACTTTGAGTTGGCAAGGACTGCTG 45 1 0.903984782676282 0.890308208832683 Y Y 3.25993583872649 3.64553343878587 3.25993583872649 0 0 0 Y 0.991023166023166 N N 195 2438 ENSMUSG00000039375 ENSMUSG00000031517 - - 8 8 54887184 55060877 intron coding Wdr17 Gpm6a 54629055 54954728 - + 0 54779650 55037328 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 33 0.887227873695282 1.25162503610584 1.25162503610584 0.887227873695282 4 - - 0.961094875436964 11202 CAAACACGTCCTGGAGCAAGGCCTCCACAGCCACGGGGTCCCCATCCAGGGTCCTGAGTGGTTTTGAGTCAGCCATCAGGATGAAATCTTCCAGCTCAGGAGGGCTCAGAGAAGGATCAGACGAGCTGGTGACAAGGTACACAATGGACTTTTCAGAATAGGG|CTGGACTGCTTATTCCTTTAGAAGCAAGGTCTCTTCCCCAACCTGGGGCTCTAATTTTCTCAGTTAAGGTGGAATCCAGCAAGTCCAGGGGATTCTCCAGTCTCCACCTTTGTCAGAGCAGGCTTGTTAACC 21 1 0.362314658679907 0.288186846563607 Y Y 3.57167229721571 3.6035982586987 3.57167229721571 0 0 0 Y 0.984899672399672 N N 1306 3566 ENSMUSG00000023044 ENSMUSG00000046897 - - 15 15 102189043 102215606 utr5p upstream Csad Zfp740 102176998 102203648 - + 0 102188962 102202444 + - N - - N dataset_6344_files 1 0.961240310077519 1 1 0 3 N Y 0 0.961240310077519 10 1.21993832633101 1.02189639023832 1.21993832633101 1.02189639023832 4 - - 0.973142113883806 9292 GGAGGTATCAAAGGACTTTTCAAAGGCGGTGATATGTCTAAGAATGTGAGTCAGTCACAGATGGCAAAATTAAACCAACAAATGGCCAAAATGATGGACCCACGAGTTCTTCATCACATG|GGAGGAGGAGGAGGAAGAAGAAAATAGGATGTCAGAAGAAGCAGAAAGACAATACCAACAAAACAAGCTGCAGGCCGATTCCATTGTACAGACAGACCAACCAGAAACAGTGTCGTCCAGCTTTGTAAATATTAATTTTGAAATGGAGGAAGACTGTGAAGCAATTAAG 13 0.627587070077396 0.568913321228002 0.464690965079815 N Y 3.57233464462502 2.71992636785275 2.71992636785275 0 0 0 Y 0.368850574712644 N Y 1463 391 ENSMUSG00000073079 ENSMUSG00000094103 + - 12 12 55112891 55214076 coding intron Srp54c 1700047I17Rik2 55089202 55199533 + + 0 55111181 55213840 + - N - - N dataset_6344_files 9 0 9 9 9 1 N N 0 0 9 0.93475793835753 1.17240826166877 1.17240826166877 0.93475793835753 4 - - 0.529926984288339 8690 CTGGAGGAAAGCACCGCAGGTCTGAGCAGCCCTGAGCCGGGCAGGGTGGGGGCAGTGGCTAAGGCCTAGCTGGGGACGATTTAAAGGTATCGCGCCACCCAGCCACACCCCACAGGCCAGGCGAGGGTGCCACCCCCGGAGATCAGAGGTCATTGCTGGCGTTCAGA|GCCTAGGAAGTGGGCTGCGTTTCAGGGGGAAGTCCATGATCACCACGTGGCAACATGCAAGCGGGTGCTG 4 0.685704457350918 0.684620189710687 0.966832507460471 N Y 3.58424216889964 3.53768019619294 3.53768019619294 39 0.98577430972389 0.260264105642257 N 0.260264105642257 N N 4781 556 ENSMUSG00000032000 ENSMUSG00000016409 + - 9 X 7873186 37150746 utr5p intron Birc3 Nkap 7848699 37126795 - + 0 7872842 37143984 - - Y - - N dataset_6344_files 1 0 1 1 0 1 N N 0 0 5 0.831776131589327 0.712950969933709 0.831776131589327 0.712950969933709 1 - - 0.520824161374586 11497 CCTTTCCAGCGAGGTTCCAAGTTCTTAGTCTGGTGCCGGCGTACCCACACGGCGTCACCGACACGGAAGGGGTGTGGTATCACTGGCTGATCTAGCTGGTCCTGATAAGCAGCGGCCAGCGGCTTCCAGACCTCTCGTTGTACTGCTTGGAGGGCCTGTAAGTGAG|CTTCTCTTCTGGAAGTCGGACCAATTCACCTCAAGCACCAGAGCTTGAATTCATGATCATCCTGGACACAGCACTCATCAGGACCGCGCCGCGGCTGA 67 0.883499713768307 0.731092666993054 0.679758623906517 N Y 3.66336194527509 3.6508225788147 3.6508225788147 0 0.0444358875625721 0 N 0.94917212167886 N N 0 1604 ENSMUSG00000096832 ENSMUSG00000039007 - + 5 15 23711061 33594552 downstream intron SNORD93 Pgcp 23710991 33083129 - + 0 23703360 33221484 + + Y - - N dataset_6344_files 76 1 38.7730061349693 5 163 1 N N 1 0 163 1.34668516543034 0.760481034595956 1.34668516543034 0.760481034595956 4 - - 0.903135577741999 8726 GAGCAAGCTGACAGCTGAGCAGAAGCTGAGCATGGACACCTTCAGATCCAACTCAGCGGACATCATTCTTTCTGCAGGGCGGCAAGAGCTCAAGAGCAAGCCAAGGCTGATAAGCATGAAGAGGATGGAGATGAGGAACAAGGCTCTGGAGTACTGGAGATAAT|CATGTCAGTTCGGCCGCGCAGGCGGGCTGCGTCGTCCTCGACGAGGCCTTTCGACGCTACCGTAACCTGCTCTTCGGTTCCGGCTCTTGGCCCCGACCCAGCTTCTCAAGTGAGTCACTGCCC 3 0.70117526311829 0.321035960603558 0.664396670389762 Y Y 3.42949092635959 3.29652844562235 3.29652844562235 0 0 0 Y 0 N N 44 8769 ENSMUSG00000049526 ENSMUSG00000025232 - - 9 9 59525501 59565105 coding coding Tmem202 Hexa 59518686 59539667 - + 0 59520238 59539868 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 1.02981806768202 0.744637679708541 1.02981806768202 0.744637679708541 4 - - 0.931447658206354 5020 CAAACCATCATTTGTATTTTTCAAACTGTCTATCGAGCCTCAAACTCC|ACCATTTCATTTTCTGGTCTTCTATTCTAGCACCTACAACAAACAAATAGTTAAAGCTGCCCGGTTAGGCCCCTGACTCAGCACTTAAGATGGGGGAACCAGAGTCCACCAAATAGGGGGTAAATGCGTTAACGACCACTAGCTCCCACATATCAAAAACCAGCCTCCTCAGATACGCAGAAACAATGCCCTGACTTCAGAC 27 0.772639018637575 0.542772921402035 0.769655490407199 N Y 3.43152237077921 3.41592783769912 3.41592783769912 0 0.89624833997344 0 N 0.584993359893758 N N 0 0 ENSMUSG00000088422 ENSMUSG00000053332 - + 5 1 79639109 161038539 downstream intron 7SK Gas5 79638815 161034422 - + 0.89624833997344 79638362 161036581 + + Y - - N dataset_6344_files 1 0 1 1 0 3 N N 0 0 9 0.52283071128472 1.06942645490056 1.06942645490056 0.52283071128472 1 - - 0.818668251983994 3184 CATTGGAGCTGTGGTGGCTTTTGTGATGAAGAGAAGGAGAAACACAGGTGGAAAAGGAGGGGACTATGCTCTGGCTCCAG|AGAACAGCGCCTGATGTTCCCTGTGAGCCTATGGGCTCAATGTGAAGAATTGTGGAGCCCAGCCTTCGCCTACACACCAGGACCCTGTCTCTGCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCGGGTCTGCAGTGGAAACTAAGGGTTCTTTGGAAAGTCGG 40 1 0.843266171585359 0.786568876550746 N Y 3.49424793801946 3.684245618384 3.49424793801946 0 0 0.551814516129032 Y 0.950201612903226 N Y 23545 2145 ENSMUSG00000073411 ENSMUSG00000035929 + - 17 17 35267499 35385290 coding utr3p H2-D1 H2-Q4 35262730 35379617 + + 0 35266514 35383995 + - N - - N dataset_6344_files 4 0.22972972972973 2.57142857142857 2 7 1 N N 0 0.22972972972973 7 0.562439098503259 1.03773974512573 1.03773974512573 0.562439098503259 4 - - 0.85501289117385 9158 CCGAATTTCAACCTCCTTATCAACAGTGGGATCTTCAAAGAGTTGTACCCTGAAGTTGCTCTTTCTCAGTGGAGTCCCACACTCAGGACAGTTTCCAGCTCCTCTTACAAACAGTAAGTCCACACAACTCTCACAC|CTTCCCCACCAGCCTGGTCCGGCTGCCCACCTCTCCCCGCCCCCCACCTCGCTTCCCTACCGGGGTGGTAGGGGGGACGACGGTGGCAACGAGCGGGCGGGGGATCCTCCC 5 1 0.770112168741176 0.964592797110167 Y Y 3.1490579347374 3.11232376639641 3.11232376639641 0 0 0 Y 0 N N 1882 677 ENSMUSG00000021103 ENSMUSG00000034460 - - 12 12 73273988 73114037 coding intron Mnat1 Six4 73123717 73099609 + - 0 73168000 73112254 - + N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 5 1.0060530353509 0.78424606692708 1.0060530353509 0.78424606692708 4 - - 0.934413835802699 1851 GCTGCAGGTGGGCTTATTCTACCATTGCTACTGTTCTGTCTTTGAAGATGTTCTTTATAGCATACTGAACACATGCCATTTGTACGAGGGTTTCCATAAAATCCGCAGCCAGTGGAGCAAAGCATAGGTGCTTGGCTGTGATTAGTTTCTTGAGCCATGTTCTTCTGTTGCA|CACCTGGCGGCGGCCCTCTCCGCCGGACGCGCTGCCGCCGCCGCCTCTCGCCGCCGCTGAGAGTGAGGACAGGTGAGGCCGCCAAACCCCCACTCGCTCCCGGCCCGCCGCCGCCGGCCCTCCGTCCGC 21 0.826443478467522 0.547250352165575 0.543160934834641 Y Y 3.38908332958226 2.95732075160099 2.95732075160099 0 0 0 Y 0.992273730684327 N N 1944 1 ENSMUSG00000030629 ENSMUSG00000085236 - - 7 7 84679361 84776549 utr5p intron Zfand6 2610206C17Rik 84615054 84689640 - + 0 84634406 84689743 + - N - - N dataset_6344_files 2 0.159420289855072 1.04878048780488 1 2 1 N Y 0 0.159420289855072 41 1.14864322933764 1.09319148723169 1.14864322933764 1.09319148723169 1 - - 0.715005473321084 9962 CTGCGGCCCGCCGGGTCCCGGAGCCCACTGCCCCAGCACCCCGCGCTCGGCGCCCGCAGACGGCGCGGACCTCAGCGCGCACTTATGGGCTCGTTACCAGGACATGCGGAGGCTGGTGCACG|ACCTTCTGCCCCCTGAGGTCTGCAGCCTCCTAAACCCAGCAGCTATTTATGCCAACAATGAGATCAGCCTGAGTGACGTCGAAGTCTATGGCTTTGACTACGACTACACGCTGGCCCAGTATGCGGATGCACTGCACCCTGAGATCTTCAATGCTGCCCGGGACATCTTGATAGAGC 93 0.0971360740885943 0.213119196903586 0.467950871740144 Y Y 3.71720464963688 3.27448372166755 3.27448372166755 0 0.983661202185792 0 Y 0.991830601092896 N N 211 4122 ENSMUSG00000058351 ENSMUSG00000071547 - - 14 14 31128930 31139121 upstream upstream 2010107H07Rik Nt5dc2 31088869 31134853 - + 0 31131376 31134739 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 33 1.1011131646754 0.808011099258204 1.1011131646754 0.808011099258204 4 - - 0.743419539119423 12549 TTGGAGATGCCAGTACCATGAGATGACCACCAAGAGCAGCAGCAGCAGTGGAGTACAGGCATCTGGAGCCTAGAGGATGACACATGTGCTACAAAGGGCCTGGCTGGAGAAGTGACCCAAGCCCTTGGAGGAGCCCAGAAGATC|GTCCATCCTGATAAAAATCACCATCCCCGGGCTGAGGAGGCCTTCAAAATTTTGCGGGCAGCTTGGGACATTGTCAGCAACCCAGAGAGGCGGAAGGAATATGAGATGAAACGGAT 18 1 0.96278392593137 0.394484707065412 N Y 3.2808195118354 3.46448140203209 3.2808195118354 1 0.965649359228432 0 N 0.974237019421324 N Y 1732 2437 ENSMUSG00000039307 ENSMUSG00000025354 + - 11 10 121222655 128819446 utr5p coding Hexdc Dnajc14 121204433 128805676 + + 0 121206748 128814038 + - Y - - N dataset_6344_files 3 0.993103448275862 1.72222222222222 1 11 1 N N 0.993103448275862 0 18 1.14864322933764 0.879306196251575 1.14864322933764 0.879306196251575 4 - - 0.927135541379163 3179 CTGGAGCAGTCCCCGTGACGCCGGGTGGCGACTGGCTCCCGGGTCTGAGGGGCTTCTGCTTGTCAGGTTCT|AGATATGTGCTGACTAGCAGGCTCACGTGCACAGTGTGGAGGATAAGCTATATCTTACAAAATGGGATTTGGGAGTGACCTGAAGAACTCACAGGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACGGTTGCTGGAGACAGTGAAGAAATTTATGGCTCTGAG 10 1 0.557528435226891 0.364482194613623 Y Y 3.15741158895574 3.54759612884129 3.15741158895574 0 0.985974921257503 0 Y 0.873774291317525 N N 10 1325 ENSMUSG00000045506 ENSMUSG00000000127 - - 17 17 63863791 64139494 upstream upstream A930002H24Rik Fer 63863300 63896018 - + 0 63864053 63896016 + - N - - N dataset_6344_files 1 0 1 1 0 1 N Y 0 0 7 0.499065678953596 1.12487819700652 1.12487819700652 0.499065678953596 3 - - 0.767822892174251