Mercurial > repos > jjohnson > defuse

diff create_reference_dataset.xml @ 35:a004033614d4

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Change for extra_files_path
author Jim Johnson <jj@umn.edu>
date Mon, 13 Oct 2014 15:42:10 -0500
parents 3099cec648e7
children 74de1ccc51db 225750bf3770
line wrap: on
line diff
--- a/create_reference_dataset.xml	Tue Oct 15 17:02:23 2013 -0500
+++ b/create_reference_dataset.xml	Mon Oct 13 15:42:10 2014 -0500
@@ -149,7 +149,7 @@
 ncbi_prefix = $genome.ncbi_prefix
 
 # Directory where you want your dataset
-dataset_directory = $config_txt.extra_files_path
+dataset_directory = $config_txt.dataset.extra_files_path
 
 #raw
 # Input genome and gene models
@@ -247,7 +247,7 @@
 ## copy config to output
 cp $defuse_config $config_txt
 ## make a data_dir  and ln -s the input fastq
-mkdir -p $config_txt.extra_files_path
+mkdir -p $config_txt.dataset.extra_files_path
 ## create_reference_dataset.pl
 perl \${DEFUSE_PATH}/scripts/create_reference_dataset.pl -c $defuse_config 
   </configfile>