Mercurial > repos > jjohnson > defuse
comparison defuse.xml @ 3:802a3c154da0
Make get_reads option the default
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 04 Jan 2013 13:24:17 -0600 |
| parents | 60a83037fd82 |
| children | ffc5e442c1ca |
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| 2:60a83037fd82 | 3:802a3c154da0 |
|---|---|
| 70 <when value="history"> | 70 <when value="history"> |
| 71 <param name="config" type="data" format="txt" label="Defuse Config file" help=""/> | 71 <param name="config" type="data" format="txt" label="Defuse Config file" help=""/> |
| 72 </when> <!-- history --> | 72 </when> <!-- history --> |
| 73 </conditional> <!-- refGenomeSource --> | 73 </conditional> <!-- refGenomeSource --> |
| 74 <param name="keep_output" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="Save DeFuse working directory files"/> | 74 <param name="keep_output" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="Save DeFuse working directory files"/> |
| 75 <param name="do_get_reads" type="boolean" checked="false" truevalue="yes" falsevalue="no" label="Run get_reads on each cluster"/> | 75 <param name="do_get_reads" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="Run get_reads on each cluster"/> |
| 76 </inputs> | 76 </inputs> |
| 77 <configfiles> | 77 <configfiles> |
| 78 <configfile name="defuse_config"> | 78 <configfile name="defuse_config"> |
| 79 #import ast | 79 #import ast |
| 80 #if $refGenomeSource.genomeSource == "history": | 80 #if $refGenomeSource.genomeSource == "history": |