Mercurial > repos > jjohnson > defuse
comparison defuse.xml @ 33:3e3ebdecb0e1
Change requirement for samtools to version 0.1.19 to pick version which misc and bcftools
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 06 Sep 2013 08:20:41 -0500 |
| parents | f51a95bdc38e |
| children | a004033614d4 |
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| 32:8027fc53f3f9 | 33:3e3ebdecb0e1 |
|---|---|
| 1 <tool id="defuse" name="DeFuse" version="1.6.1"> | 1 <tool id="defuse" name="DeFuse" version="1.6.1"> |
| 2 <description>identify fusion transcripts</description> | 2 <description>identify fusion transcripts</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.6.1">defuse</requirement> | 4 <requirement type="package" version="0.6.1">defuse</requirement> |
| 5 <requirement type="package" version="0.1.18">samtools</requirement> | 5 <requirement type="package" version="0.1.19">samtools</requirement> |
| 6 <requirement type="package" version="1.0.0">bowtie</requirement> | 6 <requirement type="package" version="1.0.0">bowtie</requirement> |
| 7 <requirement type="package" version="2013-05-09">gmap</requirement> | 7 <requirement type="package" version="2013-05-09">gmap</requirement> |
| 8 <requirement type="package" version="latest">kent</requirement> | 8 <requirement type="package" version="latest">kent</requirement> |
| 9 </requirements> | 9 </requirements> |
| 10 <command interpreter="command"> /bin/bash $shscript </command> | 10 <command interpreter="command"> /bin/bash $shscript </command> |