Mercurial > repos > jjohnson > data_manager_snpeff

diff data_manager/data_manager_snpEff_download.xml @ 3:c6769a700e55

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Update loc data to separate version 4 databases
author Jim Johnson <jj@umn.edu>
date Tue, 21 Oct 2014 14:04:33 -0500
parents 8ac7bbaac976
children 6a378d0f4856
line wrap: on
line diff
--- a/data_manager/data_manager_snpEff_download.xml	Mon Oct 20 13:17:12 2014 -0500
+++ b/data_manager/data_manager_snpEff_download.xml	Tue Oct 21 14:04:33 2014 -0500
@@ -28,7 +28,7 @@
             </when>
             <when value="cached">
                 <param name="genome_databases" type="select" display="checkboxes" multiple="true" label="Genome Version">
-                    <options from_data_table="snpeff_databases">
+                    <options from_data_table="snpeff4_databases">
                         <filter type="sort_by" column="0" />
                     </options>
                 </param>
@@ -46,13 +46,13 @@
     <tests>
         <test>
             <param name="genomeSrc"  value="named"/>
-            <param name="genome_version" value="GRCh37.71"/>
+            <param name="genome_version" value="GRCh38.76"/>
             <output name="out_file">
                 <assert_contents>
                     <!-- Check that a genome was added -->
-                    <has_text text="GRCh37.71" />
-                    <has_text text="snpeff_regulationdb" />
-                    <has_text text="snpeff_annotations" />
+                    <has_text text="GRCh38.76" />
+                    <has_text text="snpeff4_regulationdb" />
+                    <has_text text="snpeff4_annotations" />
                 </assert_contents>
             </output>
         </test>