Mercurial > repos > jjohnson > data_manager_snpeff
diff data_manager/data_manager_snpEff_download.py @ 3:c6769a700e55
Update loc data to separate version 4 databases
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 21 Oct 2014 14:04:33 -0500 |
| parents | bc50aa3b328a |
| children | 78bcf4ac437c |
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--- a/data_manager/data_manager_snpEff_download.py Mon Oct 20 13:17:12 2014 -0500 +++ b/data_manager/data_manager_snpEff_download.py Tue Oct 21 14:04:33 2014 -0500 @@ -110,18 +110,18 @@ # if snpEffectPredictor.bin download succeeded name = genome_version + (' : ' + organism if organism else '') data_table_entry = dict(value=genome_version, name=name, path=data_dir) - _add_data_table_entry( data_manager_dict, 'snpeff_genomedb', data_table_entry ) + _add_data_table_entry( data_manager_dict, 'snpeff4_genomedb', data_table_entry ) else: m = re.match(regulation_pattern,fname) if m: name = m.groups()[0] data_table_entry = dict(genome=genome_version,value=name, name=name) - _add_data_table_entry( data_manager_dict, 'snpeff_regulationdb', data_table_entry ) + _add_data_table_entry( data_manager_dict, 'snpeff4_regulationdb', data_table_entry ) elif fname in annotations_dict: value = annotations_dict[fname] name = value.lstrip('-') data_table_entry = dict(genome=genome_version,value=value, name=name) - _add_data_table_entry( data_manager_dict, 'snpeff_annotations', data_table_entry ) + _add_data_table_entry( data_manager_dict, 'snpeff4_annotations', data_table_entry ) return data_manager_dict def _add_data_table_entry( data_manager_dict, data_table, data_table_entry ):