Mercurial > repos > jjohnson > data_manager_snpeff
comparison data_manager/data_manager_snpEff_databases.xml @ 1:8ac7bbaac976
Update to snpEff version 4.0
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 16 Oct 2014 07:21:49 -0500 |
| parents | bc50aa3b328a |
| children | 6a378d0f4856 |
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| 0:bc50aa3b328a | 1:8ac7bbaac976 |
|---|---|
| 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.6" tool_type="manage_data"> | 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="4.0" tool_type="manage_data"> |
| 2 <description>Read the list of available snpEff databases</description> | 2 <description>Read the list of available snpEff databases</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.6">snpEff</requirement> | 4 <requirement type="package" version="4.0">snpEff</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="python"> | 6 <command interpreter="python"> |
| 7 data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file" | 7 data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file" |
| 8 </command> | 8 </command> |
| 9 <inputs> | 9 <inputs> |