Mercurial > repos > jjohnson > data_manager_hisat_index_builder

diff tool_data_table_conf.xml.sample @ 0:4c7db9cbbbf7 draft default tip

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author jjohnson
date Tue, 22 Jul 2014 08:52:53 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Tue Jul 22 08:52:53 2014 -0400
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+<tables>
+    <!-- Locations of all fasta files under genome directory -->
+    <table name="all_fasta" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/all_fasta.loc" />
+    </table>
+    <!-- Locations of indexes in the Bowtie mapper format -->
+    <table name="hisat_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/hisat_indices.loc" />
+    </table>
+</tables>