Mercurial > repos > jjohnson > data_manager_bowtie_index_builder
comparison data_manager_conf.xml @ 0:119b03a6eaaa draft default tip
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author | jjohnson |
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date | Tue, 20 Aug 2013 11:55:20 -0400 |
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-1:000000000000 | 0:119b03a6eaaa |
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1 <?xml version="1.0"?> | |
2 <data_managers> | |
3 | |
4 <data_manager tool_file="data_manager/bowtie_index_builder.xml" id="bowtie_index_builder" version="0.0.1"> | |
5 <data_table name="bowtie_indexes"> | |
6 <output> | |
7 <column name="value" /> | |
8 <column name="dbkey" /> | |
9 <column name="name" /> | |
10 <column name="path" output_ref="out_file" > | |
11 <move type="directory" relativize_symlinks="True"> | |
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> | |
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index</target> | |
14 </move> | |
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/${path}</value_translation> | |
16 <value_translation type="function">abspath</value_translation> | |
17 </column> | |
18 </output> | |
19 </data_table> | |
20 </data_manager> | |
21 | |
22 <data_manager tool_file="data_manager/bowtie_color_space_index_builder.xml" id="bowtie_color_space_index_builder" version="0.0.1"> | |
23 <data_table name="bowtie_indexes_color"> | |
24 <output> | |
25 <column name="value" /> | |
26 <column name="dbkey" /> | |
27 <column name="name" /> | |
28 <column name="path" output_ref="out_file" > | |
29 <move type="directory" relativize_symlinks="True"> | |
30 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> | |
31 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index/color</target> <!-- confirm this as preferred location --> | |
32 </move> | |
33 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/color/${path}</value_translation> | |
34 <value_translation type="function">abspath</value_translation> | |
35 </column> | |
36 </output> | |
37 </data_table> | |
38 </data_manager> | |
39 | |
40 </data_managers> |