Mercurial > repos > jjohnson > cummerbund
changeset 15:2d7eee38ab5b
Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 08 Nov 2013 13:28:44 -0600 |
| parents | d10befb0867a |
| children | a29a35968ddb |
| files | README cuffdiff_wrapper.xml cummerbund_wrapper.py cummerbund_wrapper.xml test-data/cuffcompare_out5.gtf test-data/cuffdiff_in1.sam test-data/cuffdiff_in2.sam test-data/cuffdiff_out1.txt test-data/cuffdiff_out10.txt test-data/cuffdiff_out11.txt test-data/cuffdiff_out2.txt test-data/cuffdiff_out3.txt test-data/cuffdiff_out4.txt test-data/cuffdiff_out5.txt test-data/cuffdiff_out6.txt test-data/cuffdiff_out7.txt test-data/cuffdiff_out8.txt test-data/cuffdiff_out9.txt tool-data/sam_fa_indices.loc.sample tool_dependencies.xml |
| diffstat | 20 files changed, 1805 insertions(+), 224 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,20 @@ +CummeRbund is an R package that is designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output. +( http://compbio.mit.edu/cummeRbund/ ) + + +Prerequisites for installing cumme=Rbund: +The linux package: libxml2-dev +In ubuntu: sudo apt-get install libxml2-dev + +R package: ggplot2 + install.packages("ggplot2",dependencies = TRUE) + +To install cummeRbund on your R server, follow the directions in: +( http://www.bioconductor.org/packages/release/bioc/html/cummeRbund.html ) + source("http://bioconductor.org/biocLite.R") + biocLite("cummeRbund") + +This galaxy tool package includes a replacement variation of the cuffdiff wrapper that will generate an output that can be used directly in cummeRbund. + + +
--- a/cuffdiff_wrapper.xml Wed Jul 17 08:25:52 2013 -0500 +++ b/cuffdiff_wrapper.xml Fri Nov 08 13:28:44 2013 -0600 @@ -1,80 +1,30 @@ -<tool id="cuffdiff_cummerbund" name="Cuffdiff" version="0.0.6"> - <!-- Wrapper supports Cuffdiff versions v1.3.0-v2.0 --> +<tool id="cuffdiff_cummerbund" name="Cuffdiff for cummeRbund" version="0.0.7"> + <!-- Wrapper supports Cuffdiff versions 2.1.0-2.1.1 --> <description>find significant changes in transcript expression, splicing, and promoter use</description> <requirements> - <requirement type="package">cufflinks</requirement> + <requirement type="package" version="2.1.1">cufflinks</requirement> </requirements> - <command interpreter="python"> - #set sel_outputs = $output_sel.__str__.split(',') - cuffdiff_wrapper.py + <version_command>cuffdiff 2>&1 | head -n 1</version_command> + <command> + cuffdiff + --no-update-check --FDR=$fdr --num-threads="4" --min-alignment-count=$min_alignment_count --library-norm-method=$library_norm_method --dispersion-method=$dispersion_method - #if 'cuffdata' in $sel_outputs or not $output_sel: - --cuffdatadir=$cuffdata.extra_files_path - #end if - #if 'cummeRbund_db' in $sel_outputs: - --cummeRbund_db=$cummeRbund_db - #end if - - #if 'isoforms_fpkm_tracking' in $sel_outputs: - --isoforms_fpkm_tracking_output=$isoforms_fpkm_tracking - #end if - #if 'genes_fpkm_tracking' in $sel_outputs: - --genes_fpkm_tracking_output=$genes_fpkm_tracking - #end if - #if 'cds_fpkm_tracking' in $sel_outputs: - --cds_fpkm_tracking_output=$cds_fpkm_tracking - #end if - #if 'tss_groups_fpkm_tracking' in $sel_outputs: - --tss_groups_fpkm_tracking_output=$tss_groups_fpkm_tracking - #end if - #if 'isoforms_exp_diff' in $sel_outputs: - --isoforms_exp_output=$isoforms_exp_diff - #end if - #if 'genes_exp_diff' in $sel_outputs: - --genes_exp_output=$genes_exp_diff - #end if - #if 'tss_groups_exp_diff' in $sel_outputs: - --tss_groups_exp_output=$tss_groups_exp_diff - #end if - #if 'cds_exp_fpkm_tracking' in $sel_outputs: - --cds_exp_fpkm_tracking_output=$cds_exp_fpkm_tracking - #end if - #if 'splicing_diff' in $sel_outputs: - --splicing_diff_output=$splicing_diff - #end if - #if 'cds_diff' in $sel_outputs: - --cds_diff_output=$cds_diff - #end if - #if 'promoters_diff' in $sel_outputs: - --promoters_diff_output=$promoters_diff - #end if - #if 'cds_read_group_tracking' in $sel_outputs: - --cds_read_group_tracking=$cds_read_group_tracking - #end if - #if 'tss_groups_read_group_tracking' in $sel_outputs: - --tss_groups_read_group_tracking=$tss_groups_read_group_tracking - #end if - #if 'genes_read_group_tracking' in $sel_outputs: - --genes_read_group_tracking=$genes_read_group_tracking - #end if - #if 'isoforms_read_group_tracking' in $sel_outputs: - --isoforms_read_group_tracking=$isoforms_read_group_tracking - #end if - ## Set advanced data parameters? #if $additional.sAdditional == "Yes": - -m $additional.frag_mean_len - -s $additional.frag_len_std_dev - #end if - - ## Normalization? - #if str($do_normalization) == "Yes": - -N + #if $additional.frag_mean_len: + -m $additional.frag_mean_len + #end if + #if $additional.frag_len_std_dev: + -s $additional.frag_len_std_dev + #end if + #if $additional.max_bundle_frags: + --max-bundle-frags="$additional.max_bundle_frags" + #end if #end if ## Multi-read correct? @@ -84,57 +34,60 @@ ## Bias correction? #if $bias_correction.do_bias_correction == "Yes": - -b + -b #if $bias_correction.seq_source.index_source == "history": - --ref_file=$bias_correction.seq_source.ref_file + ## Custom genome from history. + $bias_correction.seq_source.ref_file #else: - --ref_file="None" + ## Built-in genome. + ${__get_data_table_entry__('sam_fa_indexes', 'value', $gtf_input.dbkey, 'path')} #end if - --dbkey=${gtf_input.metadata.dbkey} - --index_dir=${GALAXY_DATA_INDEX_DIR} - #end if - - ## Inputs. - --inputA=$gtf_input - #if $group_analysis.do_groups == "No": - --input1=$aligned_reads1 - --input2=$aligned_reads2 - #else: - ## Replicates. - --labels - #for $group in $group_analysis.groups - ${group.group} - #end for - --files - #for $group in $group_analysis.groups - #for $file in $group.files: - ${file.file} - #end for - , - #end for #end if + #set labels = '\'' + '\',\''.join( [ str( $condition.name ) for $condition in $conditions ] ) + '\'' + --labels $labels + + ## Inputs. + $gtf_input + #for $condition in $conditions: + #set samples = ','.join( [ str( $sample.sample ) for $sample in $condition.samples ] ) + $samples + #end for + + ## If build cummerbund db + #if $build_cummerbund_db: + && echo 'library(cummeRbund)' > cuffData.r + #if $bias_correction.do_bias_correction == "Yes": + #if $bias_correction.seq_source.index_source == "history": + ## Custom genome from history. + && echo 'cuff<-readCufflinks( dbFile = "cuffdata.db", gtfFile = "$gtf_input", genome = "$bias_correction.seq_source.ref_file", rebuild = T)' >> cuffData.r + #else: + ## Built-in genome. + ${__get_data_table_entry__('sam_fa_indexes', 'value', $gtf_input.dbkey, 'path')} + && echo 'cuff<-readCufflinks( dbFile = "cuffdata.db", gtfFile = "$gtf_input", genome = "${__get_data_table_entry__('sam_fa_indexes', 'value', $gtf_input.dbkey, 'path')}", rebuild = T)' >> cuffData.r + #end if + #else + && echo 'cuff<-readCufflinks( dbFile = "cuffdata.db", rebuild = T)' >> cuffData.r + #end if + && Rscript --vanilla cuffData.r + && cp cuffdata.db $cummerbund_db + #end if </command> <inputs> <param format="gtf,gff3" name="gtf_input" type="data" label="Transcripts" help="A transcript GFF3 or GTF file produced by cufflinks, cuffcompare, or other source."/> - <conditional name="group_analysis"> - <param name="do_groups" type="select" label="Perform replicate analysis" help="Perform cuffdiff with replicates in each group."> - <option value="No">No</option> - <option value="Yes">Yes</option> - </param> - <when value="Yes"> - <repeat name="groups" title="Group"> - <param name="group" title="Group name" type="text" label="Group name (no spaces or commas)"/> - <repeat name="files" title="Replicate"> - <param name="file" label="Add file" type="data" format="sam,bam"/> - </repeat> - </repeat> - </when> - <when value="No"> - <param format="sam,bam" name="aligned_reads1" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""/> - <param format="sam,bam" name="aligned_reads2" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""/> - </when> - </conditional> + + <repeat name="conditions" title="Condition" min="2"> + <param name="name" title="Condition name" type="text" label="Name"/> + <repeat name="samples" title="Replicate" min="1"> + <param name="sample" label="Add replicate" type="data" format="sam,bam"/> + </repeat> + </repeat> + <param name="time_series" type="boolean" checked="false" truevalue="--time-series" falsevalue="" optional="true" label="treat samples as a time-series"> + <help> + Instructs Cuffdiff to analyze the provided samples as a time series, rather than testing for differences between all pairs of samples. + Samples should be provided in increasing time order at the command line (e.g first time point SAM, second timepoint SAM, etc.) + </help> + </param> <param name="library_norm_method" type="select" label="Library normalization method"> <option value="geometric" selected="True">geometric</option> @@ -152,11 +105,6 @@ <param name="min_alignment_count" type="integer" value="10" label="Min Alignment Count" help="The minimum number of alignments in a locus for needed to conduct significance testing on changes in that locus observed between samples."/> - <param name="do_normalization" type="select" label="Perform quartile normalization" help="Removes top 25% of genes from FPKM denominator to improve accuracy of differential expression calls for low abundance transcripts."> - <option value="No">No</option> - <option value="Yes">Yes</option> - </param> - <param name="multiread_correct" type="select" label="Use multi-read correct" help="Tells Cufflinks to do an initial estimation procedure to more accurately weight reads mapping to multiple locations in the genome."> <option value="No" selected="true">No</option> <option value="Yes">Yes</option> @@ -182,142 +130,95 @@ <when value="No"></when> </conditional> + <param name="include_read_group_files" type="select" label="Include Read Group Datasets" help="Read group datasets provide information on replicates."> + <option value="No" selected="true">No</option> + <option value="Yes">Yes</option> + </param> + <param name="build_cummerbund_db" type="boolean" truevalue="yes" falsevalue="no" checked="false" label="Build cummeRbund database"/> <conditional name="additional"> - <param name="sAdditional" type="select" label="Set Additional Parameters? (not recommended)"> + <param name="sAdditional" type="select" label="Set Additional Parameters? (not recommended for paired-end reads)"> <option value="No">No</option> <option value="Yes">Yes</option> </param> <when value="No"></when> <when value="Yes"> - <param name="frag_mean_len" type="integer" value="200" label="Average Fragment Length"/> - <param name="frag_len_std_dev" type="integer" value="80" label="Fragment Length Standard Deviation"/> + <param name="frag_mean_len" type="integer" value="" optional="true" label="Average Fragment Length Default: 200"> + <help> + Note: Cufflinks now learns the fragment length mean for each SAM file, + so using this option is no longer recommended with paired-end reads. + </help> + </param> + <param name="frag_len_std_dev" type="integer" value="" optional="true" label="Fragment Length Standard Deviation Default: 80"> + <help> + Note: Cufflinks now learns the fragment length mean for each SAM file, + so using this option is no longer recommended with paired-end reads. + </help> + </param> + <param name="max_bundle_frags" type="integer" value="" optional="true" label="--max-bundle-frags"> + <help> + Sets the maximum number of fragments a locus may have before being skipped. Skipped loci are listed in skipped.gtf. Default: 1000000 + </help> + <validator type="in_range" message="Value greater than 0" min="1"/> + </param> </when> </conditional> + </inputs> - <param name="output_sel" type="select" multiple="true" display="checkboxes" force_select="true" label="Select outputs for history datasets"> - <option value="cuffdata">cuffdata - html page with links to cuffdiff outputs</option> - <option value="cummeRbund_db">cummeRbund database</option> - <option value="run_info">run.info</option> - <option value="read_groups_info">read_groups.info</option> - <option value="splicing_diff">splicing.diff</option> - <option value="promoters_diff">promoters.diff</option> - <option value="genes_exp_diff">genes_exp.diff</option> - <option value="genes_fpkm_tracking">genes.fpkm_tracking</option> - <option value="genes_count_tracking">genes.count_tracking</option> - <option value="genes_read_group_tracking">genes.read_group_tracking</option> - <option value="isoforms_exp_diff">isoforms.exp_diff</option> - <option value="isoforms_fpkm_tracking">isoforms.fpkm_tracking</option> - <option value="isoforms_count_tracking">isoforms.count_tracking</option> - <option value="isoforms_read_group_tracking">isoforms.read_group_tracking</option> - <option value="cds_diff">cds.diff</option> - <option value="cds_exp_diff">cds_exp.diff</option> - <option value="cds_fpkm_tracking">cds.fpkm_tracking</option> - <option value="cds_count_tracking">cds.count_tracking</option> - <option value="cds_read_group_tracking">cds.read_group_tracking</option> - <option value="tss_groups_exp_diff">tss_groups_exp.diff</option> - <option value="tss_groups_fpkm_tracking">tss_groups.fpkm_tracking</option> - <option value="tss_groups_count_tracking">tss_groups.count_tracking</option> - <option value="tss_groups_read_group_tracking">tss_groups.read_group_tracking</option> - </param> - - </inputs> + <stdio> + <regex match="Error" source="both" level="fatal" description="Error"/> + <regex match=".*" source="both" level="log" description="tool progress"/> + </stdio> <outputs> - <data format="text" name="run_info" label="${tool.name} on ${on_string}: run.info"> - <filter>output_sel and 'run_info' in output_sel</filter> - </data> - <data format="tabular" name="read_groups_info" label="${tool.name} on ${on_string}: read_groups.info"> - <filter>output_sel and 'read_groups_info' in output_sel</filter> - </data> - <data format="tabular" name="splicing_diff" label="${tool.name} on ${on_string}: splicing differential expression testing"> - <filter>output_sel and 'splicing_diff' in output_sel</filter> - </data> - <data format="tabular" name="promoters_diff" label="${tool.name} on ${on_string}: promoters differential expression testing"> - <filter>output_sel and 'promoters_diff' in output_sel</filter> - </data> - <data format="tabular" name="cds_diff" label="${tool.name} on ${on_string}: CDS overloading diffential expression testing"> - <filter>output_sel and 'cds_diff' in output_sel</filter> - </data> - <data format="tabular" name="cds_exp_diff" label="${tool.name} on ${on_string}: CDS differential expression testing"> - <filter>output_sel and 'cds_exp_diff' in output_sel</filter> + <!-- Optional read group datasets. --> + <data format="cuffdatadb" name="cummerbund_db" label="${tool.name} on ${on_string}: cummeRbund sqlite Database" > + <filter>build_cummerbund_db</filter> </data> - <data format="tabular" name="cds_fpkm_tracking" label="${tool.name} on ${on_string}: CDS FPKM tracking"> - <filter>output_sel and 'cds_fpkm_tracking' in output_sel</filter> - </data> - <data format="tabular" name="cds_count_tracking" label="${tool.name} on ${on_string}: CDS counts"> - <filter>output_sel and 'cds_count_tracking' in output_sel</filter> - </data> - <data format="tabular" name="cds_read_group_tracking" label="${tool.name} on ${on_string}: CDS Read Group tracking"> - <filter>output_sel and 'cds_read_group_tracking' in output_sel</filter> + <data format="tabular" name="isoforms_read_group" label="${tool.name} on ${on_string}: isoforms read group tracking" from_work_dir="isoforms.read_group_tracking" > + <filter>(params['include_read_group_files'] == 'Yes'</filter> </data> - <data format="tabular" name="tss_groups_exp_diff" label="${tool.name} on ${on_string}: TSS groups differential expression testing"> - <filter>output_sel and 'tss_groups_exp_diff' in output_sel</filter> + <data format="tabular" name="genes_read_group" label="${tool.name} on ${on_string}: genes read group tracking" from_work_dir="genes.read_group_tracking" > + <filter>(params['include_read_group_files'] == 'Yes'</filter> </data> - <data format="tabular" name="tss_groups_fpkm_tracking" label="${tool.name} on ${on_string}: TSS groups FPKM tracking"> - <filter>output_sel and 'tss_groups_fpkm_tracking' in output_sel</filter> - </data> - <data format="tabular" name="tss_groups_count_tracking" label="${tool.name} on ${on_string}: TSS groups counts"> - <filter>output_sel and 'tss_groups_count_tracking' in output_sel</filter> + <data format="tabular" name="cds_read_group" label="${tool.name} on ${on_string}: CDs read group tracking" from_work_dir="cds.read_group_tracking" > + <filter>(params['include_read_group_files'] == 'Yes'</filter> </data> - <data format="tabular" name="tss_groups_read_group_tracking" label="${tool.name} on ${on_string}: TSS groups Read Group tracking"> - <filter>output_sel and 'tss_groups_read_group_tracking' in output_sel</filter> - </data> - <data format="tabular" name="isoforms_exp_diff" label="${tool.name} on ${on_string}: transcript differential expression testing"> - <filter>output_sel and 'isoforms_exp_diff' in output_sel</filter> - </data> - <data format="tabular" name="isoforms_fpkm_tracking" label="${tool.name} on ${on_string}: transcript FPKM tracking"> - <filter>output_sel and 'isoforms_fpkm_tracking' in output_sel</filter> - </data> - <data format="tabular" name="isoforms_count_tracking" label="${tool.name} on ${on_string}: transcript counts"> - <filter>output_sel and 'isoforms_count_tracking' in output_sel</filter> - </data> - <data format="tabular" name="isoforms_read_group_tracking" label="${tool.name} on ${on_string}: transcript Read Group tracking"> - <filter>output_sel and 'isoforms_read_group_tracking' in output_sel</filter> - </data> - <data format="tabular" name="genes_exp_diff" label="${tool.name} on ${on_string}: gene differential expression testing"> - <filter>output_sel and 'genes_exp_diff' in output_sel</filter> + <data format="tabular" name="tss_groups_read_group" label="${tool.name} on ${on_string}: TSS groups read group tracking" from_work_dir="tss_groups.read_group_tracking" > + <filter>(params['include_read_group_files'] == 'Yes'</filter> </data> - <data format="tabular" name="genes_fpkm_tracking" label="${tool.name} on ${on_string}: gene FPKM tracking"> - <filter>output_sel and 'genes_fpkm_tracking' in output_sel</filter> - </data> - <data format="tabular" name="genes_count_tracking" label="${tool.name} on ${on_string}: gene counts"> - <filter>output_sel and 'genes_count_tracking' in output_sel</filter> - </data> - <data format="tabular" name="genes_read_group_tracking" label="${tool.name} on ${on_string}: gene Read Group tracking"> - <filter>output_sel and 'genes_read_group_tracking' in output_sel</filter> - </data> - <data format="cuffdata" name="cuffdata" label="${tool.name} on ${on_string}: cuffdata" > - <filter>not output_sel or output_sel and 'cuffdata' in output_sel</filter> - </data> - <data format="cuffdatadb" name="cummeRbund_db" label="${tool.name} on ${on_string}: cummeRbund sqlite Database" > - <filter>output_sel and 'cummeRbund_db' in output_sel</filter> - </data> + + <!-- Standard datasets. --> + <data format="tabular" name="splicing_diff" label="${tool.name} on ${on_string}: splicing differential expression testing" from_work_dir="splicing.diff" /> + <data format="tabular" name="promoters_diff" label="${tool.name} on ${on_string}: promoters differential expression testing" from_work_dir="promoters.diff" /> + <data format="tabular" name="cds_diff" label="${tool.name} on ${on_string}: CDS overloading diffential expression testing" from_work_dir="cds.diff" /> + <data format="tabular" name="cds_exp_fpkm_tracking" label="${tool.name} on ${on_string}: CDS FPKM differential expression testing" from_work_dir="cds_exp.diff" /> + <data format="tabular" name="cds_fpkm_tracking" label="${tool.name} on ${on_string}: CDS FPKM tracking" from_work_dir="cds.fpkm_tracking" /> + <data format="tabular" name="tss_groups_exp" label="${tool.name} on ${on_string}: TSS groups differential expression testing" from_work_dir="tss_group_exp.diff" /> + <data format="tabular" name="tss_groups_fpkm_tracking" label="${tool.name} on ${on_string}: TSS groups FPKM tracking" from_work_dir="tss_groups.fpkm_tracking" /> + <data format="tabular" name="genes_exp" label="${tool.name} on ${on_string}: gene differential expression testing" from_work_dir="gene_exp.diff" /> + <data format="tabular" name="genes_fpkm_tracking" label="${tool.name} on ${on_string}: gene FPKM tracking" from_work_dir="genes.fpkm_tracking" /> + <data format="tabular" name="isoforms_exp" label="${tool.name} on ${on_string}: transcript differential expression testing" from_work_dir="isoform_exp.diff" /> + <data format="tabular" name="isoforms_fpkm_tracking" label="${tool.name} on ${on_string}: transcript FPKM tracking" from_work_dir="isoforms.fpkm_tracking" /> </outputs> - <stdio> - <exit_code range="1:" level="fatal" description="Cufflinks Err" /> - </stdio> - <tests> <test> <!-- cuffdiff cuffcompare_out5.gtf cuffdiff_in1.sam cuffdiff_in2.sam --> + <!-- + NOTE: as of version 0.0.6 of the wrapper, tests cannot be run because multiple inputs to a repeat + element are not supported. <param name="gtf_input" value="cuffcompare_out5.gtf" ftype="gtf" /> <param name="do_groups" value="No" /> <param name="aligned_reads1" value="cuffdiff_in1.sam" ftype="sam" /> <param name="aligned_reads2" value="cuffdiff_in2.sam" ftype="sam" /> - <!-- Defaults. --> <param name="fdr" value="0.05" /> <param name="min_alignment_count" value="0" /> <param name="do_bias_correction" value="No" /> <param name="do_normalization" value="No" /> <param name="multiread_correct" value="No"/> <param name="sAdditional" value="No"/> - <!-- - Line diffs are needed because cuffdiff does not produce deterministic output. - TODO: can we find datasets that lead to deterministic behavior? - --> <output name="splicing_diff" file="cuffdiff_out9.txt"/> <output name="promoters_diff" file="cuffdiff_out10.txt"/> <output name="cds_diff" file="cuffdiff_out11.txt"/> @@ -329,6 +230,7 @@ <output name="genes_fpkm_tracking" file="cuffdiff_out6.txt" lines_diff="200"/> <output name="isoforms_exp" file="cuffdiff_out1.txt" lines_diff="200"/> <output name="isoforms_fpkm_tracking" file="cuffdiff_out5.txt" lines_diff="200"/> + --> </test> </tests>
--- a/cummerbund_wrapper.py Wed Jul 17 08:25:52 2013 -0500 +++ b/cummerbund_wrapper.py Fri Nov 08 13:28:44 2013 -0600 @@ -13,8 +13,10 @@ def html_report_from_directory( html_out, dir ): html_out.write( '<html>\n<head>\n<title>Galaxy - cummeRbund Output</title>\n</head>\n<body>\n<p/>\n<ul>\n' ) for fname in sorted( os.listdir( dir ) ): - # html_out.write( '<li><a href="%s">%s</a></li>\n' % ( fname, fname ) ) - html_out.write( '<li><a href="%s"><img src="%s" alt="" height="80" width="80">%s</a></li>\n' % ( fname, fname , fname ) ) + if fname.endswith(".txt"): + html_out.write( '<li><a href="%s">%s</a></li>\n' % ( fname, fname ) ) + else: + html_out.write( '<li><a href="%s"><img src="%s" alt="" height="80" width="80">%s</a></li>\n' % ( fname, fname , fname ) ) html_out.write( '</ul>\n</body>\n</html>\n' ) def __main__():
--- a/cummerbund_wrapper.xml Wed Jul 17 08:25:52 2013 -0500 +++ b/cummerbund_wrapper.xml Fri Nov 08 13:28:44 2013 -0600 @@ -1,5 +1,4 @@ -<tool id="cummerbund" name="cummeRbund" version="0.0.6"> - +<tool id="cummerbund" name="cummeRbund" version="0.0.7"> <description>R package designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output</description> <command interpreter="python"> @@ -64,8 +63,12 @@ <param name="replicates" type="boolean" truevalue="T" falsevalue="F" checked="True" label="Replicates?"/> </when> <when value="maplot"> - <param name="x" type="text" label="Sample name 1"/> - <param name="y" type="text" label="Sample name 2"/> + <param name="x" type="text" label="Sample name 1" help="Condition1 name used in cuffdiff"> + <validator type="empty_field" message="A Condition name from the cuffdiff run is required"/> + </param> + <param name="y" type="text" label="Sample name 2" help="Condition2 name used in cuffdiff"> + <validator type="empty_field" message="A Condition name from the cuffdiff run is required"/> + </param> <param name="use_count" type="boolean" truevalue="T" falsevalue="F" checked="False" label="Use Count?"/> </when> <when value="dendrogram"> @@ -185,7 +188,7 @@ <exit_code range="1:" level="fatal" description="CummerBund Error" /> </stdio> <outputs> - <data format="data" name="output_database" label="${tool.name} on ${on_string}: Database File (sqlite)"> + <data format="cuffdatadb" name="output_database" label="${tool.name} on ${on_string}: Database File (sqlite)"> <filter>backend_database_source['backend_database_selector'] == "cuffdiff_output"</filter> </data> <data format="html" name="output_html" label="${tool.name} on ${on_string} (HTML)"/> @@ -244,6 +247,18 @@ rebuild = F) #end if +## Print out info +print(cuff) +sink("cuffdb_info.txt") +print(cuff) +print("SAMPLES:") +samples(cuff) +print("REPLICATES:") +replicates(cuff) +print("FEATURES:") +print(annotation(genes(cuff))) +sink() + #for $i, $p in enumerate($plots, start=1): #set $filename = "plot%02d-%s.png" % ($i, $p.plot['type']) png(filename = "${filename}", width = ${p.width}, height = ${p.height})
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffcompare_out5.gtf Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,90 @@ +chr1 Cufflinks exon 3204755 3204833 . - . gene_id "XLOC_000001"; transcript_id "TCONS_00000001"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.13.1"; nearest_ref "Xkr4"; class_code "c"; tss_id "TSS1"; +chr1 Cufflinks exon 3111450 3111490 . . . gene_id "XLOC_000002"; transcript_id "TCONS_00000002"; exon_number "1"; oId "CUFF.1.1"; class_code "u"; tss_id "TSS2"; +chr1 Cufflinks exon 3111546 3111576 . . . gene_id "XLOC_000003"; transcript_id "TCONS_00000003"; exon_number "1"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS3"; +chr1 Cufflinks exon 3174766 3174792 . . . gene_id "XLOC_000004"; transcript_id "TCONS_00000051"; exon_number "1"; oId "CUFF.1.1"; class_code "u"; tss_id "TSS4"; +chr1 Cufflinks exon 3187402 3187428 . . . gene_id "XLOC_000005"; transcript_id "TCONS_00000052"; exon_number "1"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS5"; +chr1 Cufflinks exon 3188522 3188548 . . . gene_id "XLOC_000006"; transcript_id "TCONS_00000053"; exon_number "1"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS6"; +chr1 Cufflinks exon 3189811 3190789 . . . gene_id "XLOC_000007"; transcript_id "TCONS_00000054"; exon_number "1"; oId "CUFF.11.1"; class_code "u"; tss_id "TSS7"; +chr1 Cufflinks exon 3190859 3191434 . . . gene_id "XLOC_000008"; transcript_id "TCONS_00000055"; exon_number "1"; oId "CUFF.7.1"; class_code "u"; tss_id "TSS10"; +chr1 Cufflinks exon 3191513 3192077 . . . gene_id "XLOC_000009"; transcript_id "TCONS_00000056"; exon_number "1"; oId "CUFF.9.1"; class_code "u"; tss_id "TSS11"; +chr1 Cufflinks exon 3192251 3192336 . . . gene_id "XLOC_000010"; transcript_id "TCONS_00000057"; exon_number "1"; oId "CUFF.13.1"; class_code "u"; tss_id "TSS13"; +chr1 Cufflinks exon 3192442 3192494 . . . gene_id "XLOC_000011"; transcript_id "TCONS_00000009"; exon_number "1"; oId "CUFF.39.1"; class_code "u"; tss_id "TSS14"; +chr1 Cufflinks exon 3192551 3192629 . . . gene_id "XLOC_000012"; transcript_id "TCONS_00000010"; exon_number "1"; oId "CUFF.41.1"; class_code "u"; tss_id "TSS15"; +chr1 Cufflinks exon 3192650 3192676 . . . gene_id "XLOC_000013"; transcript_id "TCONS_00000058"; exon_number "1"; oId "CUFF.15.1"; class_code "u"; tss_id "TSS16"; +chr1 Cufflinks exon 3192732 3192811 . . . gene_id "XLOC_000014"; transcript_id "TCONS_00000011"; exon_number "1"; oId "CUFF.43.1"; class_code "u"; tss_id "TSS17"; +chr1 Cufflinks exon 3192941 3193042 . . . gene_id "XLOC_000015"; transcript_id "TCONS_00000012"; exon_number "1"; oId "CUFF.45.1"; class_code "u"; tss_id "TSS18"; +chr1 Cufflinks exon 3194186 3194226 . . . gene_id "XLOC_000016"; transcript_id "TCONS_00000013"; exon_number "1"; oId "CUFF.47.1"; class_code "u"; tss_id "TSS19"; +chr1 Cufflinks exon 3194303 3194329 . . . gene_id "XLOC_000017"; transcript_id "TCONS_00000014"; exon_number "1"; oId "CUFF.49.1"; class_code "u"; tss_id "TSS20"; +chr1 Cufflinks exon 3194707 3194733 . . . gene_id "XLOC_000018"; transcript_id "TCONS_00000059"; exon_number "1"; oId "CUFF.17.1"; class_code "u"; tss_id "TSS21"; +chr1 Cufflinks exon 3195084 3195110 . . . gene_id "XLOC_000019"; transcript_id "TCONS_00000015"; exon_number "1"; oId "CUFF.51.1"; class_code "u"; tss_id "TSS22"; +chr1 Cufflinks exon 3195451 3195477 . . . gene_id "XLOC_000020"; transcript_id "TCONS_00000016"; exon_number "1"; oId "CUFF.53.1"; class_code "u"; tss_id "TSS23"; +chr1 Cufflinks exon 3197090 3197116 . . . gene_id "XLOC_000021"; transcript_id "TCONS_00000017"; exon_number "1"; oId "CUFF.55.1"; class_code "u"; tss_id "TSS24"; +chr1 Cufflinks exon 3197247 3197273 . . . gene_id "XLOC_000022"; transcript_id "TCONS_00000018"; exon_number "1"; oId "CUFF.57.1"; class_code "u"; tss_id "TSS25"; +chr1 Cufflinks exon 3197347 3197373 . . . gene_id "XLOC_000023"; transcript_id "TCONS_00000019"; exon_number "1"; oId "CUFF.59.1"; class_code "u"; tss_id "TSS26"; +chr1 Cufflinks exon 3197426 3197452 . . . gene_id "XLOC_000024"; transcript_id "TCONS_00000060"; exon_number "1"; oId "CUFF.19.1"; class_code "u"; tss_id "TSS27"; +chr1 Cufflinks exon 3200023 3200191 . . . gene_id "XLOC_000025"; transcript_id "TCONS_00000020"; exon_number "1"; oId "CUFF.7.1"; class_code "u"; tss_id "TSS28"; +chr1 Cufflinks exon 3200326 3200352 . . . gene_id "XLOC_000026"; transcript_id "TCONS_00000021"; exon_number "1"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS29"; +chr1 Cufflinks exon 3200431 3200457 . . . gene_id "XLOC_000027"; transcript_id "TCONS_00000062"; exon_number "1"; oId "CUFF.21.1"; class_code "u"; tss_id "TSS30"; +chr1 Cufflinks exon 3201008 3201039 . . . gene_id "XLOC_000028"; transcript_id "TCONS_00000063"; exon_number "1"; oId "CUFF.26.1"; class_code "u"; tss_id "TSS31"; +chr1 Cufflinks exon 3201078 3201481 . . . gene_id "XLOC_000029"; transcript_id "TCONS_00000022"; exon_number "1"; oId "CUFF.9.1"; class_code "u"; tss_id "TSS32"; +chr1 Cufflinks exon 3201597 3201666 . . . gene_id "XLOC_000030"; transcript_id "TCONS_00000065"; exon_number "1"; oId "CUFF.29.1"; class_code "u"; tss_id "TSS33"; +chr1 Cufflinks exon 3201673 3201699 . . . gene_id "XLOC_000031"; transcript_id "TCONS_00000023"; exon_number "1"; oId "CUFF.11.1"; class_code "u"; tss_id "TSS34"; +chr1 Cufflinks exon 3201726 3201809 . . . gene_id "XLOC_000032"; transcript_id "TCONS_00000066"; exon_number "1"; oId "CUFF.31.1"; class_code "u"; tss_id "TSS35"; +chr1 Cufflinks exon 3211522 3211561 . . . gene_id "XLOC_000033"; transcript_id "TCONS_00000067"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.33.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS36"; +chr1 Cufflinks exon 3212214 3212292 . . . gene_id "XLOC_000034"; transcript_id "TCONS_00000024"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.15.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS37"; +chr1 Cufflinks exon 3212368 3212439 . . . gene_id "XLOC_000035"; transcript_id "TCONS_00000025"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.19.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS38"; +chr1 Cufflinks exon 3212718 3212801 . . . gene_id "XLOC_000036"; transcript_id "TCONS_00000068"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.35.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS39"; +chr1 Cufflinks exon 3213096 3213192 . . . gene_id "XLOC_000037"; transcript_id "TCONS_00000026"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.17.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS40"; +chr1 Cufflinks exon 3213119 3213242 . . . gene_id "XLOC_000037"; transcript_id "TCONS_00000069"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.37.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS40"; +chr1 Cufflinks exon 3240607 3240633 . . . gene_id "XLOC_000038"; transcript_id "TCONS_00000070"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.39.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS41"; +chr1 Cufflinks exon 3242480 3242512 . . . gene_id "XLOC_000039"; transcript_id "TCONS_00000071"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.41.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS42"; +chr1 Cufflinks exon 3242634 3242923 . . . gene_id "XLOC_000040"; transcript_id "TCONS_00000027"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.25.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS43"; +chr1 Cufflinks exon 3242925 3243005 . . . gene_id "XLOC_000041"; transcript_id "TCONS_00000072"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.43.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS44"; +chr1 Cufflinks exon 3243019 3243079 . . . gene_id "XLOC_000042"; transcript_id "TCONS_00000028"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.21.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS45"; +chr1 Cufflinks exon 3243109 3243154 . . . gene_id "XLOC_000043"; transcript_id "TCONS_00000073"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.45.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS46"; +chr1 Cufflinks exon 3243348 3243401 . . . gene_id "XLOC_000044"; transcript_id "TCONS_00000029"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.23.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS47"; +chr1 Cufflinks exon 3254080 3254106 . . . gene_id "XLOC_000045"; transcript_id "TCONS_00000074"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.47.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS48"; +chr1 Cufflinks exon 3256975 3257011 . . . gene_id "XLOC_000046"; transcript_id "TCONS_00000030"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.27.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS49"; +chr1 Cufflinks exon 3277156 3277182 . . . gene_id "XLOC_000047"; transcript_id "TCONS_00000075"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.49.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS50"; +chr1 Cufflinks exon 3277191 3277218 . . . gene_id "XLOC_000048"; transcript_id "TCONS_00000031"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.61.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS51"; +chr1 Cufflinks exon 3277914 3278390 . . . gene_id "XLOC_000049"; transcript_id "TCONS_00000076"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.51.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS52"; +chr1 Cufflinks exon 3280118 3280144 . . . gene_id "XLOC_000050"; transcript_id "TCONS_00000077"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.53.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS54"; +chr1 Cufflinks exon 3280499 3280525 . . . gene_id "XLOC_000051"; transcript_id "TCONS_00000078"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.55.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS55"; +chr1 Cufflinks exon 3280687 3280741 . . . gene_id "XLOC_000052"; transcript_id "TCONS_00000033"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.65.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS56"; +chr1 Cufflinks exon 3282505 3282531 . . . gene_id "XLOC_000053"; transcript_id "TCONS_00000079"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.57.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS57"; +chr1 Cufflinks exon 3282651 3282677 . . . gene_id "XLOC_000054"; transcript_id "TCONS_00000080"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.59.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS58"; +chr1 Cufflinks exon 3282761 3282832 . . . gene_id "XLOC_000055"; transcript_id "TCONS_00000081"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.61.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS59"; +chr1 Cufflinks exon 3284967 3284993 . . . gene_id "XLOC_000056"; transcript_id "TCONS_00000082"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.63.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS60"; +chr1 Cufflinks exon 3290489 3290553 . . . gene_id "XLOC_000057"; transcript_id "TCONS_00000034"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.67.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS61"; +chr1 Cufflinks exon 3290799 3290859 . . . gene_id "XLOC_000058"; transcript_id "TCONS_00000083"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.65.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS62"; +chr1 Cufflinks exon 3290920 3291273 . . . gene_id "XLOC_000059"; transcript_id "TCONS_00000084"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.69.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS63"; +chr1 Cufflinks exon 3299444 3299640 . . . gene_id "XLOC_000060"; transcript_id "TCONS_00000085"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.67.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS65"; +chr1 Cufflinks exon 3299610 3299664 . . . gene_id "XLOC_000060"; transcript_id "TCONS_00000037"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.73.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS66"; +chr1 Cufflinks exon 3299692 3299733 . . . gene_id "XLOC_000061"; transcript_id "TCONS_00000086"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.71.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS67"; +chr1 Cufflinks exon 3300052 3300078 . . . gene_id "XLOC_000062"; transcript_id "TCONS_00000038"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.75.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS68"; +chr1 Cufflinks exon 3307749 3307775 . . . gene_id "XLOC_000063"; transcript_id "TCONS_00000087"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.73.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS69"; +chr1 Cufflinks exon 3318621 3318647 . . . gene_id "XLOC_000064"; transcript_id "TCONS_00000088"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.75.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS70"; +chr1 Cufflinks exon 3319000 3319051 . . . gene_id "XLOC_000065"; transcript_id "TCONS_00000039"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.77.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS71"; +chr1 Cufflinks exon 3330528 3330554 . . . gene_id "XLOC_000066"; transcript_id "TCONS_00000089"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.77.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS72"; +chr1 Cufflinks exon 3351241 3351311 . . . gene_id "XLOC_000067"; transcript_id "TCONS_00000090"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.79.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS73"; +chr1 Cufflinks exon 3355888 3355914 . . . gene_id "XLOC_000068"; transcript_id "TCONS_00000040"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.79.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS74"; +chr1 Cufflinks exon 3355908 3356119 . . . gene_id "XLOC_000068"; transcript_id "TCONS_00000091"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.81.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS74"; +chr1 Cufflinks exon 3356181 3356225 . . . gene_id "XLOC_000069"; transcript_id "TCONS_00000092"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.83.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS75"; +chr1 Cufflinks exon 3363077 3363176 . . . gene_id "XLOC_000070"; transcript_id "TCONS_00000093"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.85.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS76"; +chr1 Cufflinks exon 3363215 3363278 . . . gene_id "XLOC_000071"; transcript_id "TCONS_00000041"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.81.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS77"; +chr1 Cufflinks exon 3363388 3363446 . . . gene_id "XLOC_000072"; transcript_id "TCONS_00000094"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.87.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS78"; +chr1 Cufflinks exon 3363754 3363849 . . . gene_id "XLOC_000073"; transcript_id "TCONS_00000042"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.83.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS79"; +chr1 Cufflinks exon 3364872 3364919 . . . gene_id "XLOC_000074"; transcript_id "TCONS_00000095"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.89.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS80"; +chr1 Cufflinks exon 3367136 3367162 . . . gene_id "XLOC_000075"; transcript_id "TCONS_00000043"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.85.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS81"; +chr1 Cufflinks exon 3367211 3367237 . . . gene_id "XLOC_000076"; transcript_id "TCONS_00000096"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.91.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS82"; +chr1 Cufflinks exon 3367334 3367382 . . . gene_id "XLOC_000077"; transcript_id "TCONS_00000044"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.87.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS83"; +chr1 Cufflinks exon 3369581 3369607 . . . gene_id "XLOC_000078"; transcript_id "TCONS_00000097"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.93.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS84"; +chr1 Cufflinks exon 3375002 3375028 . . . gene_id "XLOC_000079"; transcript_id "TCONS_00000098"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.95.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS85"; +chr1 Cufflinks exon 3377212 3377262 . . . gene_id "XLOC_000080"; transcript_id "TCONS_00000045"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.89.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS86"; +chr1 Cufflinks exon 3379889 3379915 . . . gene_id "XLOC_000081"; transcript_id "TCONS_00000099"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.97.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS87"; +chr1 Cufflinks exon 3386740 3386836 . . . gene_id "XLOC_000082"; transcript_id "TCONS_00000100"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.99.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS88"; +chr1 Cufflinks exon 3391326 3391352 . . . gene_id "XLOC_000083"; transcript_id "TCONS_00000046"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.91.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS89"; +chr1 Cufflinks exon 3435842 3435880 . . . gene_id "XLOC_000084"; transcript_id "TCONS_00000047"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.93.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS90"; +chr1 Cufflinks exon 3447762 3447788 . . . gene_id "XLOC_000085"; transcript_id "TCONS_00000048"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.95.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS91"; +chr1 Cufflinks exon 3450907 3450965 . . . gene_id "XLOC_000086"; transcript_id "TCONS_00000049"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.97.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS92"; +chr1 Cufflinks exon 3451052 3451109 . . . gene_id "XLOC_000087"; transcript_id "TCONS_00000050"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.99.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS93";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_in1.sam Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,400 @@ +EAS38_8_212_338_985 0 chr1 3004981 0 35M * 0 0 CCAATGGGCCTCTATTTGCAGTGATGGGCGAGTAG hhhhhhhhhhhhhEhhhhYhhhhUhhh@Ih?BZ?e NM:i:2 +EAS38_8_8_215_414 0 chr1 3035356 0 35M * 0 0 TACCCCATAAAAGCCCCTGGCTTTCGCGCCTCGTG hhhhhhhhhhhhhhhhhhhhhhh`GI>PPIQPBOH NM:i:1 +EAS38_8_8_622_393 16 chr1 3065512 0 35M * 0 0 AAAAAAAAAAAAACAAAAAAAAAAAAAACAGCGAG hhHhhhhhhhhhhMhhhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_53_557_326 16 chr1 3075162 0 35M * 0 0 TAGAGAAATGGATACAGAAAGTGTGGTAATTTACA Ihehhhhh]hhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_259_911_538 0 chr1 3099409 0 35M * 0 0 TTTGGCTGGGAGACAATTAATGACTGCTTTTTTTT hhhhhhhhhhhh_hhhhhNhhP\hhaEhhHhNhhh NM:i:2 +EAS38_8_284_729_569 16 chr1 3113004 255 35M * 0 0 CTATCTGTTGCAAAGAGAACTTTCCTTGGTGTAAG EIIEKhRh@K_hahhhhhhh`ehhhhhhhhhhhhh NM:i:0 +EAS38_8_27_537_242 0 chr1 3118613 255 35M * 0 0 AGGACTCACATTCCCTTACTTTGTTTACAAAATGA hhh`hhhhhhhhhhhhhhhhhhhhhh]hhYXOhD` NM:i:0 +EAS38_8_38_947_12 0 chr1 3131368 0 35M * 0 0 TATTAGTCCCCTATCANATTTAGGATTGTTAATAA hhhhhhh_bchhhhUh;\hhhhh`EXcIVhNJZ]P NM:i:2 +EAS38_8_205_433_879 16 chr1 3136988 0 35M * 0 0 CATATCAATTGAACGGAACTAAAGTCTGTGACAGT hhhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_155_191_162 16 chr1 3136999 0 35M * 0 0 AACGGAACTAAAGTCTGTGACAGTGGACATAGCTG hh_h\hhYhhhhhMhfhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_216_635_828 0 chr1 3137063 0 35M * 0 0 ATCTGGAATTATGTGATTATAATTTTCTTAGCATT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_317_949_784 0 chr1 3137063 0 35M * 0 0 ATCTGGAATTATGTGATTATAATTTTCTTAGCATT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhNchh NM:i:0 +EAS38_8_278_281_786 16 chr1 3137078 0 35M * 0 0 ATTATAATTTTCTTAGCATTTTCTTTGTAAAAAAA AhhhQhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_228_462_705 0 chr1 3137133 0 35M * 0 0 GTTGGTGTATAGTAAAAAGTAAAGAAATTCTGAGA hhhhhhhhhhhhhhhhhhh_hghhWhYh`LhhKbY NM:i:0 +EAS38_8_299_582_840 0 chr1 3137133 0 35M * 0 0 GTTGGTGTATAGTAAAAAGTAAAGAAATTCTGAGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhWhhhhh NM:i:0 +EAS38_8_125_742_683 16 chr1 3137135 0 35M * 0 0 TGGTGTATAGTAAAAAGTAAAGAAATTCTGAGAGG GJCZSShchhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_208_212_874 0 chr1 3137137 0 35M * 0 0 GTGTATAGTAAAAAGTAAAGAAATTCTGAGAGGAG hhhhhhhhhhhhhhhhhhhhhhhhh[hhhhhhh`h NM:i:0 +EAS38_8_241_424_62 16 chr1 3137137 0 35M * 0 0 GTGTATAGTAAAAAGTAAAGAAATTCTGAGAGGAG hhhhhhhhehhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_245_195_910 16 chr1 3137137 0 35M * 0 0 GTGTATAGTAAAAAGTAAAGAAATTCTGAGAGGAG Bhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_234_890_706 0 chr1 3137138 0 35M * 0 0 TGTATAGTAAAAAGTAAAGAAATTCTGAGAGGAGT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhUhh NM:i:0 +EAS38_8_317_909_810 16 chr1 3137175 0 35M * 0 0 TATTTTAGGATAATACATATATACATATGCAGTGT hhhhhhhaThhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_111_444_456 0 chr1 3137180 0 35M * 0 0 TAGGTTAATACATATATACATATGCAGTGTGTGTG hhhhhhhhhhhhhhhhhhhahhhhhhhhgehhhhH NM:i:1 +EAS38_8_134_193_731 0 chr1 3137180 0 35M * 0 0 TAGGATAATACATATATACATATGCAGTGTGTGTG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_138_869_374 0 chr1 3137180 0 35M * 0 0 TAGGATAATACATATATACATATGCAGTGTGTGTG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_36_257_907 0 chr1 3137192 0 35M * 0 0 TATATACATATGCAGTGTGTGTGCCAGTGGTGTTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhNJDhS NM:i:0 +EAS38_8_50_322_852 0 chr1 3137192 0 35M * 0 0 TATATACATATGCAGTGTGTGTGCCAGTGGTGTTA hhhhhhhhhhhhhhhhhhhhhhhRcZhhhhVhShY NM:i:0 +EAS38_8_207_430_640 16 chr1 3146524 0 35M * 0 0 AAAAAACATCGGCACAACAATCAAAAAAAAAAAAA VE_AhhhhFhhhhh]hhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_289_914_684 0 chr1 3154024 255 35M * 0 0 TCACAGAAGGCTCACTTCCTTTCTGTCTGTGTCAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhdhhMGT NM:i:0 +EAS38_8_35_737_747 16 chr1 3174758 255 35M * 0 0 TTTTGGGTGAGATGGAATCTCAGAGTAGTTATTTT [hghdhMhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_75_492_572 16 chr1 3174758 255 35M * 0 0 TTTTGGGTGAGATGGAATCTCAGAGTAGTTATTTT [Vhhh^hhhhhhhhhhhdhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_187_160_172 16 chr1 3175562 255 35M * 0 0 TAGTCTGGTCTGTGGCTTCAGCGGTAGGATGGCCT BT\JAGMQVRN[QhYZGchhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_56_600_894 0 chr1 3175828 255 35M * 0 0 GAGAAAGAGGTGGGAAGGGAAAGAGAGAGAGAAGA hhhhhhhhhhhhhhhhhhhhhhhhhhhShChDKhI NM:i:0 +EAS38_8_106_467_709 16 chr1 3181781 255 35M * 0 0 CTTTAGTACAGGTTACATTCCATACCTATAGCAAG hhhhhhhhhhh`hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_199_476_527 16 chr1 3181781 255 35M * 0 0 CTTTAGTACAGGTTACATTCCATACCTATAGCAAG E[dbhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_116_967_124 16 chr1 3187134 255 35M * 0 0 ATAGCTCTTCATCTAGGGGTGGGACTTTTGAGATT hghYhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_182_44_990 16 chr1 3187394 255 35M * 0 0 GAAATGCTCATTCTCATAGAGAAGAGATTGCCTAG EhhhaKhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_203_996_132 16 chr1 3187394 255 35M * 0 0 GAAATGATCATTCTCATAGAGAAGAGATTGCCTAG JXJ`_eFVVhhhhhchhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_318_612_118 0 chr1 3188522 255 35M * 0 0 GTATTCTTAATCTATTGTGTTTTGTTTGTTCTTTG hhhhhhhhhhhhhhhhhhShhhhIhhhWhh_hYhC NM:i:1 +EAS38_8_52_573_715 16 chr1 3188914 255 35M * 0 0 TTTGGAAGATAGTTTTCATTTCAGGACTGTCATTA hh]hDhh\hhhghhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_82_668_114 16 chr1 3189123 255 35M * 0 0 TAGATTCTGTTGAAAGCTGCTTGTGTAGGTGCTGG Jhfheh@_Nh`hhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_229_732_980 16 chr1 3189293 255 35M * 0 0 ATATGTAGAAAAAGAAAGCAATTAGATGTATCATA hhhhWhhOhhhhhghhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_49_685_15 0 chr1 3189811 255 35M * 0 0 CTTTTAAAATGACCACAGTGTACTTTATTTAATTA hhhhhhhhhhhhhhhhhhhhhhhhhh]hhhPahZQ NM:i:2 +EAS38_8_228_500_937 0 chr1 3189812 255 35M * 0 0 TTTTAAAATGACCACAGTGTACTTTATTTAATGAT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhLh NM:i:1 +EAS38_8_8_865_653 0 chr1 3189812 255 35M * 0 0 TTTTAAAATGACCACAGTGTACTTTATTTAATGAT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_284_550_449 0 chr1 3189815 255 35M * 0 0 TGAAATGACCACAGTGTACTTTATTTAATGATTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhPhhhh NM:i:1 +EAS38_8_44_493_707 0 chr1 3189839 255 35M * 0 0 TTAATGATTTTTGTACTTTGTGTTGCAATAAAATA hhhhhhhhhhhhhhhhhhhhhhhhRhhhhhhhhhh NM:i:0 +EAS38_8_173_339_743 0 chr1 3189847 255 35M * 0 0 TTTTGTACTTTGTGTTGCAATAAAATAAAAAAAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhZhhhf NM:i:0 +EAS38_8_69_320_425 16 chr1 3189862 255 35M * 0 0 TGAAATAAAAAAAAAAAAAAATCTACAAAATTCAA _OahhShhhhAhhhhhhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_253_215_784 0 chr1 3189882 255 35M * 0 0 ATCTACAAAATTCAAATATATAAAATTTCAAGTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_254_492_492 0 chr1 3189882 255 35M * 0 0 ATCTACAAAATTCAAATATATAAAATTTCAAGTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhchhhhh NM:i:0 +EAS38_8_164_969_744 0 chr1 3189884 255 35M * 0 0 CTACAAAATTCAAATATATAAAATTTCAAGTTTTC hhhhhhhhhhhhhhhhhhhhhVhhWhTNchDhhgA NM:i:0 +EAS38_8_76_118_672 0 chr1 3189938 255 35M * 0 0 AGAAAAAAAATCAGATAACCGAGGAAAATTATTCA hhhhhhhhhhhhhhhhhhhhhhhh]hhhhhThhR] NM:i:0 +EAS38_8_322_903_184 16 chr1 3189967 255 35M * 0 0 TATTCATTATGAAGTACTACTTTCCACTTCATTTC O[ENehNVh`ahh]hhhhhhWhhhhhhhhhhhhhh NM:i:0 +EAS38_8_122_863_114 16 chr1 3189975 255 35M * 0 0 ATGAAGTACTACTTTCCACTTCATTTCATCACAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_328_905_544 0 chr1 3189975 255 35M * 0 0 ATGAAGTACTACTTTCCACTTCATTTCATCACAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhXhO NM:i:0 +EAS38_8_49_611_982 16 chr1 3189991 255 35M * 0 0 CACTTCATTTCATCACAAATTGTAACTTACTTAAC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_149_471_590 0 chr1 3189993 255 35M * 0 0 CTTCATTTCATCACAAATTGTAACTTACTTAACTG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc NM:i:0 +EAS38_8_176_471_461 0 chr1 3189993 255 35M * 0 0 CTTCATTTCATCACAAATTGTAACTTACTTAACTG hhhhhhhhhhhhhhhhhhhhhhchhh`hhh[hhhO NM:i:0 +EAS38_8_330_91_472 16 chr1 3189999 255 35M * 0 0 TTAATCACAAATTGTAACTTACTTAACTGACCAAA hhOhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_330_964_788 16 chr1 3189999 255 35M * 0 0 TTCATCACAAATTGTAACTTACTTAACTGACCAAA aIhhhh`hhhhhhhhhhhhhBhhhhhhhchhhhhh NM:i:0 +EAS38_8_281_200_582 16 chr1 3190038 255 35M * 0 0 CTATGGTACTGCAGTATAGAAAATACTCCACACAC ONK[MhhhdhhQhhhhhhhMhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_241_125_175 16 chr1 3190056 255 35M * 0 0 GAAAATAATCCACACACTGTGCTTTGAGCTAGAGC HhhhhShIhhShhhhhhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_274_895_968 0 chr1 3190074 255 35M * 0 0 GTGCTTTGAGCTAGAGCACTTGGAGTCACTGCACA hhhhhhhhhhhhhhhhPhOhhhhPhhMTMXhLBMC NM:i:1 +EAS38_8_274_589_297 16 chr1 3190081 255 35M * 0 0 GAGCTAGAGCACTGGGAGTCACTGCCCAGGGCAGC ]W_IHUh_hh^WZDhhhhKhhh[hhhhhhhhhhhh NM:i:1 +EAS38_8_11_418_433 0 chr1 3190094 255 35M * 0 0 TGGAGTCACTGCCCAGGGCAGCAGCCTCCAACCAA hhhhhhhhhhhhhhhhhhbCchhb`PUPhJWIOGA NM:i:0 +EAS38_8_324_436_604 16 chr1 3190136 255 35M * 0 0 ACACTTACAAGTTGAATTCTAAAGGAAGGTCTGGT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_131_262_425 16 chr1 3190137 255 35M * 0 0 CACGTACAAGTTGAATTCTAAAGGAAGGTCTGGTT dVKEhhhhhhhWhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_5_661_318 16 chr1 3190137 255 35M * 0 0 CACTTACAAGTTGAATTCTAAAGGAAGGTCTGGTT F^O_ZhhhhhAhhhhhMh`hhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_109_581_805 0 chr1 3190144 255 35M * 0 0 AAGTTGAATTCTAAAGGAAGGTCTGGTTATGTGGG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_279_908_963 0 chr1 3190154 255 35M * 0 0 CTAAAGGAAGGTCTGGTTATGTGGGGTTGGAATAT hhhhhhhhhhhhhhhhhhhhhhhhhhDhhhRDEhH NM:i:0 +EAS38_8_207_793_649 16 chr1 3190155 255 35M * 0 0 TAAAGGAAGGTCTGGTTATGTGGGGTTGGAATATG FThTO[ZcIHRhhShhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_249_136_550 0 chr1 3190167 255 35M * 0 0 TGGTTATGTGGGGTTGGAATATGTATATCTATATA hhhhhhhhhhhhhhhhhghhhhhhhhhhhhDhJhh NM:i:0 +EAS38_8_197_214_431 16 chr1 3190168 255 35M * 0 0 GGTTATGTGGGGTTGGAATATGTATATCTATATAT EUEU@QhJhhVgFUhhhhPhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_124_625_963 16 chr1 3190174 255 35M * 0 0 GTGGGGTTGGAATATGTATATCTATATATCTCTAT ]hdTChhhXhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_314_668_328 16 chr1 3190176 255 35M * 0 0 GGGGTTGGAATATGTATATCTATATATCTCTATAT hhhh]]hhhhOh_hhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_8_247_406 16 chr1 3190176 255 35M * 0 0 GGGGTTGGAATATGTATATCTATATATCTCTATAT fY]NUFQQhhVcRhhhhhhehhhhhhhhhhhhhhh NM:i:0 +EAS38_8_45_380_957 16 chr1 3190191 255 35M * 0 0 ATATCTATATATCTCTATATATATTTACATCAAAG hhhVhbhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_224_453_647 16 chr1 3190214 255 35M * 0 0 TTTACATCAAAGAATTTAATAACTCATTTAAATTT hKhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_120_914_892 0 chr1 3190236 255 35M * 0 0 CTCATTTAAATTTTTGTTTCAAATAAAATTCCAAA hhhhhhhhhhhhhhhhhhhhhhhhhhfhhhLWh]K NM:i:0 +EAS38_8_8_442_670 0 chr1 3190258 255 35M * 0 0 ATAAAATTCCAAATACATTTGTACAATGTTTACAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhRhhTe_\ NM:i:0 +EAS38_8_245_767_298 16 chr1 3190284 255 35M * 0 0 TGTTTACAAAGTAAGAGACAGGACTGGCAGGTTTG WOF`hhhhhhhbhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_94_374_121 16 chr1 3190284 255 35M * 0 0 TGTTTACAAAGTAAGAGACAGGACTGGCAGGTTTG Shh`hhRhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_256_414_787 0 chr1 3190333 255 35M * 0 0 CACCGTGATGTCCGGGTGATATATCTTCACGTTGC hhhhhhhhhhhhhhhhdhchhhhh`hhJRBhfhhJ NM:i:0 +EAS38_8_215_417_539 16 chr1 3190353 255 35M * 0 0 ATATCTTCACGTTGCCTGCACACACCTTATTTCTG VAHGh@XhBhhhRhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_167_839_349 0 chr1 3190379 255 35M * 0 0 TTATTTCTGAAATGGAGAGAGAAACTCAAGAATGT hhhhhhhhhhhhhhhhhhhhhdhhhhhPhhDhhCh NM:i:0 +EAS38_8_235_344_488 0 chr1 3190402 255 35M * 0 0 ACTCAAGAATGTCACCGACTATGCATCAGAATACT hhhhhhhhhhhhhhhhhLhhhhbfhGUILPJQQPL NM:i:0 +EAS38_8_287_803_220 0 chr1 3190402 255 35M * 0 0 ACTCAAGAATGTCACCGACTATGCATCAGAATACT hhhhhhhhhhhhhhhhhhhhhhhhdhgTMVEh\^N NM:i:0 +EAS38_8_23_488_181 16 chr1 3190434 255 35M * 0 0 ACTATGTACAGTTGAAGTTAGGGAGCTGAGAACCT hChhhhOhhhhgUhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_137_662_459 16 chr1 3190469 255 35M * 0 0 AGTGTTCTGTTCTCTTCTGGTTTGTCTTCATCTAC eOKeGUhIhVhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_228_762_237 16 chr1 3190469 255 35M * 0 0 AGTGGTCTGTTCTCTTCTGGTTTGTCTTCATCTAC ZhMhbWK\hgShShhhh^hhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_65_836_536 16 chr1 3190469 255 35M * 0 0 AGTGTTCTGTTCTCTTCTGGTTTGTCTTCATCTAC ahYhThhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_100_122_849 0 chr1 3190545 255 35M * 0 0 CAAACATTGGAAAGAGGAAGGAGAAAAACACAAAA hhhhhhhhhhhhhhhhhhhhhXhhhhhhCdM[TUh NM:i:1 +EAS38_8_172_157_846 16 chr1 3190553 255 35M * 0 0 GGAAAGAGGAAGGAGAAAAGTACAAAATATTTAAG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_166_123_980 16 chr1 3190565 255 35M * 0 0 GAGAAAAGCACAAAATATTTAAGGCAAATTAAGCA FhThhhhLhhhhhhhhhhhhhhhbhhhhhhhhhhh NM:i:0 +EAS38_8_202_25_949 16 chr1 3190601 255 35M * 0 0 ATATGTATAGTCTCTTTGTGCCAGGAGGATGTGAC OKTX@[hhdGVhVhhhhMhdhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_135_382_764 0 chr1 3190604 255 35M * 0 0 TGTACAGTCTCTTTGTGCCAGGAGGATGTGACTTT hhhhhhhhhhhhhhhhhhhhhhhhhOhhhhYHhhh NM:i:0 +EAS38_8_256_748_407 16 chr1 3190604 255 35M * 0 0 TGTACAGTCTCTTTGTGCCAGGAGGATGTGACTTT RWEhhhhZhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_328_369_595 0 chr1 3190604 255 35M * 0 0 TGTACAGTCTCTTTGTGCCAGGAGGATGTGACTTT hhhhhhhhhhhhhhhhhhhhhhhhhFahJORXhhh NM:i:0 +EAS38_8_13_985_934 16 chr1 3190609 255 35M * 0 0 AGTCTCTTTGTGCCAGGAGGATGTGACTTTCTTTT STZhQhhUhcdhhhhdSh^Zhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_13_657_254 0 chr1 3190659 255 35M * 0 0 GCTTTAAAAAATTCAAATAAAGCAAGTCTGGTGTG hhhhhhhhhhhhhhhhhhhhhhhhZhhhhhYh]h\ NM:i:0 +EAS38_8_97_368_634 0 chr1 3190659 255 35M * 0 0 GCTTTAAAAAATTCAAATAAAGCAAGTCTGGTGTG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_158_637_333 0 chr1 3190697 255 35M * 0 0 TGGGTTGCTTGTGTTGTTTTAATTTTTTTTGAAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh@ZMhQ NM:i:0 +EAS38_8_7_431_889 0 chr1 3190697 255 35M * 0 0 TGGGTTGCTTGTGTTGTTTTAATTTTTTTTGAAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_129_799_390 0 chr1 3190859 255 35M * 0 0 TAAAATAATGAGAGAATGGAGAACCAATGTAAGGA hhhhhhhhhhhhbhQMhhhXhJgFNJVKJLT>BI? NM:i:0 +EAS38_8_186_234_660 16 chr1 3190910 255 35M * 0 0 TCTGGAAGCAGGCTCACCAAGTATGATGGTTTCAT bb\hhhhhhhhdhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_99_392_34 16 chr1 3190940 255 35M * 0 0 TTCATACACAGAAAAACATTTGTTCTTTTGGATGC `dAhhhEUMhhhhhhhhhhThhhhhhhhhhhhhhh NM:i:1 +EAS38_8_141_299_800 0 chr1 3190964 255 35M * 0 0 CTTTTGGATGCCATTAGTTCAGCCAGTGTCAACAT hhhhhhhhhhhhhhhhhhhhhhhhahhhhhhhQh] NM:i:0 +EAS38_8_41_30_673 0 chr1 3190983 255 35M * 0 0 CAGCCAGTGTCAACATGACTAGTGGTTTCCCCAGC hhhhhhhhhhhhhhhhhhQhhhhhhJhh>SWHLEM NM:i:1 +EAS38_8_270_818_467 16 chr1 3191047 255 35M * 0 0 CTGCTTTCCAGGCTTCTCATCTATAGATAGAGAAG YADUL]DhhhhYhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_295_700_520 0 chr1 3191049 255 35M * 0 0 GCTTTCCAGGCTTCTCATCTATAGATAGAGAAGAC hhhhhhhhhhhhhhhhhhhhRhhhhhhah`IhRXG NM:i:0 +EAS38_8_326_937_869 0 chr1 3191049 255 35M * 0 0 GCTTTCCAGGCTTCTCATCTATAGATAGAGAAGAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhQMhFG? NM:i:1 +EAS38_8_156_546_203 0 chr1 3191080 255 35M * 0 0 AGACTTTTACAAGGTGTATGTATTGAATCCATTAT hhhhhhhhhhhhhhhhhhhfhhhhDhhVhhRhhPh NM:i:1 +EAS38_8_226_788_95 0 chr1 3191080 255 35M * 0 0 AGACTTTTACAAGGTGTATGTATTTAAGCCATTAT hhhhhhhhhhhhhhhhhhhhhhhhPhhSghchhhh NM:i:1 +EAS38_8_206_454_499 16 chr1 3191117 255 35M * 0 0 AAAATGACATTATTTATCATTATTAGAAATTCCAA hhhhZhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_126_432_418 0 chr1 3191141 255 35M * 0 0 AGAAATTCCAACCCTAGTTATGAAAGATTGAGGGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhYhchR NM:i:0 +EAS38_8_255_473_525 0 chr1 3191143 255 35M * 0 0 AAATTCCAACCCTAGTTATGAAAGATTGAGGGAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhWhhhafh NM:i:0 +EAS38_8_293_908_459 16 chr1 3191160 255 35M * 0 0 ATGAAAGATTGAGGGAAAGTGATAAAGAACAAAAG hhehhhhhhYhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_126_512_733 0 chr1 3191163 255 35M * 0 0 AAAGATTGAGGGAAAGTGATAAAGAACAAAAGGGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhN NM:i:0 +EAS38_8_132_357_350 0 chr1 3191163 255 35M * 0 0 AAAGATTGAGGGAAAGTGATAAAGAACAAAAGGGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh^hL NM:i:0 +EAS38_8_225_963_686 16 chr1 3191186 255 35M * 0 0 GAACAAAAGGGAGGGATATTATTCTCTCATTTTTA UchhhhfhhhahNhahhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_91_183_721 0 chr1 3191203 255 35M * 0 0 ATTATTCTCTCATTTTTAACAGCATATTTGTCTTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh[ NM:i:0 +EAS38_8_91_184_720 0 chr1 3191203 255 35M * 0 0 ATTATTCTCTCATTTTTAACAGCATATTTGTCTTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhX NM:i:0 +EAS38_8_37_742_366 16 chr1 3191253 255 35M * 0 0 TACTGTGTGGCTTCAAAGAAGATAGTCATCTCTGG h]hQhhB_hhRhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_164_833_223 16 chr1 3191267 255 35M * 0 0 AAAGAAGATAGTCATCTCTGGTTCTCTTACTGAGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_20_3_646 16 chr1 3191299 255 35M * 0 0 AGAATAGAAAGTCTCTCCTTACTGAGAATAGGAAG hVhh_hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_305_336_434 16 chr1 3191299 255 35M * 0 0 AGAATAGAAAGTCTCTCCTTACTGAGAATAGGAAG hhhhhhhhhhhUhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_133_876_487 16 chr1 3191301 255 35M * 0 0 AATAGAAAGTCTCTCCTTACTGAGAATAGGAAGCC hhGhThhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_58_243_264 16 chr1 3191305 255 35M * 0 0 GAAAGTCTCTAATTACTGAGAATAGGAAGCCATCT hhhhh?UQLOIAhhhWhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_158_87_484 16 chr1 3191325 255 35M * 0 0 AATAGGAAGCCATCTTCATACCTGTCCCTCTGCAT gh@hChhhh`LhFhhghhRhhhhhghhhhhhhhhh NM:i:0 +EAS38_8_49_289_587 16 chr1 3191360 255 35M * 0 0 TTATTCTTGAGGTTACTGAGCCATCTGGCTACAGA hhh^XhKUhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_226_316_409 0 chr1 3191368 255 35M * 0 0 GAGGTTACTGAGCCATCTGGCTACAGAGAAGAAAA hhhhhhhhhhhhhhhhhhahhhah_UOhDENhC[G NM:i:0 +EAS38_8_27_871_685 16 chr1 3191375 255 35M * 0 0 CAGAGCCATCTGGCTACAGAGAAGAAAAGCAAGAG gAhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_323_782_711 16 chr1 3191375 255 35M * 0 0 CTGAGCCATCTGGCTACAGAGAAGAAAAGCAAGAG hGdhZhghhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_138_990_817 16 chr1 3191399 255 35M * 0 0 AAAAGCAAGAGTTGTTTTTTTATTTTTATTTTATT hhhhKhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_185_443_369 16 chr1 3191399 255 35M * 0 0 AAAAGCAAGAGTTGTTTTTTTATTTTTATTTTATT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_16_393_343 16 chr1 3191400 255 35M * 0 0 AAAGCAAGAGTTGTTTTTTTATTTTTATTTTATTT hhhhVhhhhhI]hPJhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_50_691_313 16 chr1 3191400 255 35M * 0 0 AAAGCAAGAGTTGTTTTTTTATTTTTATTTTATTT hhhhhhhhhhhhhXhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_189_168_310 16 chr1 3191408 255 35M * 0 0 AGTTGTTTTTTTATTTTTATTTTATTTTTATTTTT hhWWhhh[hh_hhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_247_520_310 16 chr1 3191408 255 35M * 0 0 AGTTGTTTTTTTATTTTTATTTTATTTTTATTTTT hhTRhhh]hhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_8_620_387 0 chr1 3191411 3 35M * 0 0 TTTTTTTTTATTTTTATTTTATTTTTATTTTTTTA hhhhhhhhhhhhhhh`hhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_264_985_305 0 chr1 3191415 1 35M * 0 0 TTTTTATTTTTATTTTATTTTTATTTTTTTAATTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhOhh NM:i:1 +EAS38_8_290_750_320 16 chr1 3191505 255 35M * 0 0 CAGACAATGGCTTTAAGTGGGGCCTATATGAACTG BaFA>PbShGXfXhh_hJhh[hhhhhhhhhhhhhh NM:i:1 +EAS38_8_220_527_228 16 chr1 3191562 255 35M * 0 0 CGGTTTTGTGAAGGTAATATATCAGTAATATGGTT E[gYhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_181_540_123 0 chr1 3191572 255 35M * 0 0 AAGGTAATATATCAGTAATATGGTTGACATAAATA hhhhhhhhhhhhhhhhhhhhhhhhhOfhPhhEZDS NM:i:0 +EAS38_8_28_698_660 0 chr1 3191572 255 35M * 0 0 AAGGTAATATATCAGTAATATGGTTGACATAAATA hhhhhhhhhhhhhhhhhhhhhhhhhheRchhHhGh NM:i:0 +EAS38_8_304_298_316 0 chr1 3191572 255 35M * 0 0 AAGGTAATATATCAGTAATATGTTTGACATAAATA hhhhhhhhhhhhhhhhhhhhhhhhhhbchhhTchh NM:i:1 +EAS38_8_146_777_942 0 chr1 3191575 255 35M * 0 0 GTAATATATCAGTAATATGGTTGACATAAATAAGC hhhhhhhhhhhhhhhhhhhhhhhhahhhhhhhhhG NM:i:0 +EAS38_8_206_582_659 0 chr1 3191575 255 35M * 0 0 GTAATATATCAGTAATATGGTTGACATAAATAAAC hhhhhhhhhhhhhhhhhhhhhhhhhhhhgh[hh@T NM:i:1 +EAS38_8_113_379_524 0 chr1 3191576 255 35M * 0 0 TAATATATCAGTAATATGGTTGACATAAATAAGCT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhIh NM:i:0 +EAS38_8_197_772_581 16 chr1 3191611 255 35M * 0 0 GGGAAATAGTTCTTTTAGGAAGTAGAAGATTTTTC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_256_457_159 16 chr1 3191611 255 35M * 0 0 GGGAAATAGTTCTTTTAGGAAGTAGAAGATTTTTC hhhhhhUhhhgPhhghhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_315_836_955 0 chr1 3191675 255 35M * 0 0 TGAAAAGAATGTTAGTTGGCTGTAACCATAAAATT hhhhhhhhhhhhhhhhhhhLhhHhhhEMhghJhUW NM:i:0 +EAS38_8_255_763_380 16 chr1 3191702 255 35M * 0 0 ATAAAATGGGCAGTTGTATTTACAAATAATCACAT hhhhhhhBhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_279_818_155 0 chr1 3191716 255 35M * 0 0 TGTATTTACAAATAATCACATATATGATGCTTACA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhT^G NM:i:0 +EAS38_8_48_883_242 16 chr1 3191719 255 35M * 0 0 ATTTAAAAATAATCACATATATGATGCTTACAGAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_78_140_97 0 chr1 3191764 255 35M * 0 0 ATTTCTAAATAATCACATATGCTAAAAGCTAGTTT hhhhhhhhhhhhhhhhhhhhPhhh\ThGhhDILh] NM:i:1 +EAS38_8_322_980_805 16 chr1 3191782 255 35M * 0 0 ATGCTAAAAGCTAGGTTTTTCTAATACACTTTTAT hSYhhhhhh\hhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_319_99_291 16 chr1 3191786 255 35M * 0 0 TAAAAGCTAGGTTTTTCTAATACACTTTTACTTTC hhhhhhhdhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_64_224_620 0 chr1 3191811 255 35M * 0 0 TTTTATTTTCATGGAGGGCTCTAGAGGTTTCCACG hhhhhhhhhhhhhPhhhhhhhhhhZh]>hhCPJQJ NM:i:1 +EAS38_8_108_348_710 0 chr1 3191850 255 35M * 0 0 ATAGAAACCACTGAAAAGAGACTCAACTCTTTTTC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh\ NM:i:0 +EAS38_8_231_364_552 0 chr1 3191864 255 35M * 0 0 AAAGAGACTCAACTCTTTTTCCCCCCAGCAATATT hhhhhhhhhhhhhhhhhhhhhhhhhhfhhhRhEhh NM:i:0 +EAS38_8_116_293_619 0 chr1 3191865 255 35M * 0 0 AAGAGACTCAACTCTTTTTCCCCCCAGCAATATTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhchhhhX NM:i:0 +EAS38_8_145_345_869 0 chr1 3191865 255 35M * 0 0 AAGAGACTCAACTCTTTTTCCCCCCAGCAATATTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhchhXhhh NM:i:0 +EAS38_8_275_299_203 0 chr1 3191865 255 35M * 0 0 AAGAGACTCAACTCTTTTTCCCCCCAGCAATATTA hhhhhhhhhhhhhhhhhhhhhhhhhHBhhBhXh^\ NM:i:0 +EAS38_8_14_653_187 16 chr1 3191901 255 35M * 0 0 GTTGCTCTGGGCTGCTCTATGCATATGGCATGTTG NQKhhRTYh@hNdhhWMhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_123_560_667 16 chr1 3191909 255 35M * 0 0 GTGCTGCTCTATGCATATGGCATGTTGTTGGTACC eThh]hhfhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_158_848_347 16 chr1 3191913 255 35M * 0 0 GGCTCTATGCATATGGCATGTTGTTGGTACCTGTA @U\EWWhRbhhhhbhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_259_577_716 0 chr1 3191933 255 35M * 0 0 TTGTTGGTACCTGTACCATTCTCTTCCATTGAGAA hhhhhhhhhhhhhhhRhhhhhhhhh]hhhhhKhhh NM:i:0 +EAS38_8_37_266_444 16 chr1 3191981 255 35M * 0 0 GGTGGAGGAGCTGTTCAGCTCTCTCTAACCTATTT EfQhWOhh`hhWhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_298_155_843 16 chr1 3191988 255 35M * 0 0 GAGCTGTTCAGCTCTCTCTAACCTATTTAGATTTT Lhh`hhh[hhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_171_911_326 16 chr1 3192010 255 35M * 0 0 CTATTTAGATTTTATCTTTCACTTTGTGATAGAAT [hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_213_546_978 16 chr1 3192010 255 35M * 0 0 CTATTTAGATTTTATCTTTCACTTTGTGATAGAAT afhhhhh\hhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_165_431_451 0 chr1 3192012 255 35M * 0 0 ATTTAGATTTTATCTTTCACTTTGTGATAGAATCT hhhhhhhhhhhhhhhhhhhhhhhhhhhhh]Chhhh NM:i:0 +EAS38_8_130_352_184 16 chr1 3192020 255 35M * 0 0 TTTATCTTTCACTTTGTGATAGAATCTCTCTATAG hfdhhYhhhghJhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_303_420_658 16 chr1 3192025 255 35M * 0 0 CTTTCACTTTGTGATAGAATCTCTCTATAGAATGT hKhhhUhhhhhhhhhhhhh]hhhhhhhhhhhhhhh NM:i:0 +EAS38_8_11_860_892 16 chr1 3192043 255 35M * 0 0 ATCTCTCTATAGAATGTTCTCTCCACCACCTCCTG LLhXhchhhh^@hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_166_250_850 16 chr1 3192043 255 35M * 0 0 ACCTCTCTATAGAATGTTCTCTCCACCACCTCCTG M@X?CGhhhhhLhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_41_436_855 0 chr1 3192251 255 35M * 0 0 TACCTTTTACCCACTTACTGTTCTTACATGACCTG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhbAhhh NM:i:0 +EAS38_8_1_614_740 0 chr1 3192310 255 35M * 0 0 GCACTGTAGATATTTTTGAGGAGTCACATAATTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_1_615_739 0 chr1 3192310 255 35M * 0 0 GCACTGTAGATATTTTTGAGGAGTCACATAATTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_11_667_100 0 chr1 3192520 255 35M * 0 0 CTCCTCAAGGGAAAATTTGGAAAGTATTTCATATT hhhhhhhhhhhhhhhhhhh\hhhHhhhhhhhhhhh NM:i:0 +EAS38_8_142_397_982 16 chr1 3192642 255 35M * 0 0 CTGTTAGCACAGTTCAATGATACATTCTTATTTTA hVShThOhhhhGhhhhhhhAhFhhhhhhhhhhhhh NM:i:2 +EAS38_8_201_45_850 16 chr1 3192642 255 35M * 0 0 CTGTTAGCACAGTTCAATGGTGCATTCTTATTTTA hfMfYhhhVhh[hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_198_171_959 0 chr1 3192730 255 35M * 0 0 TAGTCATTTAGGCAAGGAAATAGACATTGTTTTGA hhhhhhhhhhhhhhhhhhhhhhhfZhhhhhhhhTR NM:i:0 +EAS38_8_300_863_946 16 chr1 3193601 255 35M * 0 0 ATTCCTTTCTTCTTTGTTGCTATCATTGAACCACA BGbhah[IhhhhhhfOhh^hhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_311_818_593 0 chr1 3193885 255 35M * 0 0 CACAGATGCACAGATTGATGATCTCTAGGAAAAAG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhZ]hh NM:i:0 +EAS38_8_126_604_962 0 chr1 3194707 255 35M * 0 0 TGGATCAAACAATTTAAACAACTTTAGCTTTACAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhKWh NM:i:1 +EAS38_8_95_901_210 0 chr1 3194707 255 35M * 0 0 TGGATCAAACAATTTAAACAACTTTAGCTTTACAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_145_407_869 16 chr1 3195051 255 35M * 0 0 TAGGTTGCAGTTGCTCTATGTGATGTATTTCTCTT ShP?MhHhhZhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_111_861_260 16 chr1 3196449 255 35M * 0 0 TTTTTTCCTGGAGTGCATAATGGATACATTTGATG \OhfhMhhShhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_167_257_42 16 chr1 3197418 255 35M * 0 0 AATTAAGGCATCAGTGTTCTGAACTGTGTGATAGC hhhAhhhhUhVhhhbhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_233_573_175 16 chr1 3197418 255 35M * 0 0 AATTAAGGCATAAGTGTTCTGAACTGTGTGATAGC hhDIhhhh[h_BhhVhhhdhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_305_871_204 16 chr1 3199438 255 35M * 0 0 AGTTGCTCACTTTCATGAGTAGCTTTGACTAATTA hXGMDTVdhhYhZhhPhhhhhhhhchhhhhhhhhh NM:i:0 +EAS38_8_231_724_560 0 chr1 3200057 255 35M * 0 0 TACAGCAATAACACATGGCAAATTCTTAATAATGA hhhhhhhhhhhhhhhhhhhhQhhhhhgJhShQeAA NM:i:0 +EAS38_8_203_543_728 0 chr1 3200118 255 35M * 0 0 CCACAAGGAAATCTATAGGCAAACAAAATAACCAA hhhhhhhhhhhhhhhhhhhhhhh^Xhhh_hh\@Ch NM:i:0 +EAS38_8_229_849_498 0 chr1 3200118 255 35M * 0 0 CCACAAGGAAATCTATAGGCAAACAAAATAACTAA hhhhhhhhhhhhhhhhhhhbhfhhY`hQcaK?hBV NM:i:1 +EAS38_8_119_995_590 0 chr1 3200431 255 35M * 0 0 CTTATTTCTGTGGGCACATGGCTGGTTGCCACTTC hhhhhhhhhhhhhhhhhhhhhhhhDVhEEJICIh@ NM:i:1 +EAS38_8_253_690_533 0 chr1 3200431 255 35M * 0 0 CTTATTTCTGTGGGCACATGGCTGCTTGCCCCTTC hhhhhhhhhhhhhhhhhhhhhhhhIhRHM@GQMR? NM:i:1 +EAS38_8_2_361_608 16 chr1 3200848 255 35M * 0 0 CAAATGTTGGGTAGCAGATTGGTGTCATAAGTCAA G^h^PNLLKh@hhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_19_443_443 16 chr1 3201005 255 35M * 0 0 GGTCCACCTTGGTCCTGCTGTGCTGTCAGCTTCTG N\MhhAVhQYhh]hhShhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_240_860_321 0 chr1 3201008 255 35M * 0 0 CCACCTTGGTCCTGCTGTGCTGTCAGCTTTTGTCT hhhhhhhhhhhhhhhhhhehhhhSGhHhP@YI`CL NM:i:1 +EAS38_8_159_889_369 16 chr1 3201153 255 35M * 0 0 TATATAGAAATAGTCGTGGCTAATGGCAAAGATAT Nh`hPhhhhhhhhNhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_6_649_343 16 chr1 3201153 255 35M * 0 0 TATATAGAAATAGTCGTGGCTAATGGCAAAGATAT hhhhhhhhhhhhhhhhhhhZhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_159_13_859 16 chr1 3201231 255 35M * 0 0 CATTAGAAAAAATTCACAGGATTCTTGTCTAAACA hhghhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_206_389_817 0 chr1 3201597 255 35M * 0 0 CATGCATTTCTAAGTTTATCTCTGTGTAGATGCAT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhZhahhh NM:i:0 +EAS38_8_8_834_910 16 chr1 3201632 255 35M * 0 0 GTAAGAGAGTCAGTCTTTCTGTCTGTCTGTTTCTG KTEPRY\hhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_193_381_989 0 chr1 3201726 255 35M * 0 0 GGCAAATCTGTAGAAATTGATATCTCTTTATGTTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_218_286_583 16 chr1 3201770 255 35M * 0 0 CAGGGATCAAATTCAGGTCAAGTTTGCATCTTTTT hh[a\h\hhhh^hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_231_842_613 16 chr1 3201775 255 35M * 0 0 ATCAAGTTCAGGTCAAGTTTGCATCTTTTTTCAGT hahhhOhbhhhKhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_69_697_617 16 chr1 3201775 255 35M * 0 0 ATCAAATTCAGGTCAAGTTTGCATCTTTTTTCAGT heghhhOhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_315_783_294 16 chr1 3205321 255 35M * 0 0 CTAAAAGTAAAAACAAATCCTGAAATATGTAGAAA ERhhhhhXhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_208_943_432 16 chr1 3206163 255 35M * 0 0 CCTTGGAGGAGATGGGGAACATTCAAAAGCTAAAA bVQHbOhahhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_17_380_277 0 chr1 3209126 255 35M * 0 0 TTGGTGTGCTTATCCGACACTGTAGGTAGAAACCA hhhhhhhhhhhhhhhh]hPh\NhhJQhEKCEOJhG NM:i:1 +EAS38_8_156_409_184 16 chr1 3211514 255 35M * 0 0 CAAGAAAGATTGATGAGACACAGTTGATAGAGGGA HKhThhhhhhOhhghhhhLhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_189_963_938 0 chr1 3211535 255 35M * 0 0 AGTTGATAGAGGGATGATAAATAATCCTTTCCTTT hhhhhhhhhhhhhhhhahhh^hhdSGTTZ`>D[XR NM:i:0 +EAS38_8_194_593_290 0 chr1 3212718 255 35M * 0 0 GCTTAAGACACTTTGCATCCCTCTTTTGTAACATT hhhhhhhhhhhhhhhhhhhhhhhhhhhWhRK^Jhb NM:i:0 +EAS38_8_54_951_1001 0 chr1 3212775 255 35M * 0 0 ACTTTCCTTTTCAGGAAAAAAAATGTATATAATAT hhhhhhhhhhhhhhhhhhh[hhhhhIHhhdbaSOJ NM:i:0 +EAS38_8_55_222_593 16 chr1 3213111 255 35M * 0 0 CTCACTGCCTCCCTCTTAGGACTCTTACACTGAAA h>hPhf`ZhYhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_192_865_198 16 chr1 3213157 255 35M * 0 0 AGTCAATGCAAGAAAGCAGATGCTTCCATCTTGCT _JHhOhFhBhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_257_284_263 16 chr1 3213208 255 35M * 0 0 AAAAAAAACAAAACAAATCTCCACTTTTTGTAAAT hXhMhhhhOhhhhIhhhfhPhQhhhhhhhhhhhhh NM:i:2 +EAS38_8_14_341_452 0 chr1 3234830 255 35M * 0 0 CCTTGATGTCTTGATGGTTGAAATAGGTTACATTT hhhhhhhhhhhhhhhhhhhh`hhh^IhhhN`Lhhh NM:i:0 +EAS38_8_171_140_943 0 chr1 3239649 255 35M * 0 0 TCCCTGTTAGATTCAAATGTTACTTTATAGTTAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh^h NM:i:0 +EAS38_8_98_123_525 16 chr1 3240599 255 35M * 0 0 ACATCCCTCCCTAAATAAACCACAATCCACCCCCA hdhLDhEMhhfhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_178_873_141 16 chr1 3242478 255 35M * 0 0 TTTTTTTTTTTTTTTAAACAAGATTTTTAGTTTTT OVhhRhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_215_180_235 16 chr1 3242478 255 35M * 0 0 TGTTTTTTTTTTTTTAAACAAGATTTTTAGTTTTT hThhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_7_814_774 16 chr1 3242478 255 35M * 0 0 TTTTTTTTTTTTTTTAAACAAGATTTTTAGTTTTT Jhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_315_926_983 16 chr1 3242791 255 35M * 0 0 ACCTCCTCCTATAGCTTCTAGAGACAACAGACCTT @<BEAZIMRhHhIdhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_163_191_986 16 chr1 3242917 255 35M * 0 0 AATCATATTTTGACCTCAATTAGCCTTGGGGTTGA hhTRhSaeh\UAThhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_173_800_35 16 chr1 3242917 255 35M * 0 0 AATAATATTTTGACCTCAATTAGCCTTGGGGTTGA hh=FhRhVhOhShGhcZhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_25_295_514 0 chr1 3242979 255 35M * 0 0 GCTCTTCTGTCAAGAGTACCTGAAATTTATCTGTG hhhhhhhhhhhhhhhhhhhhhhhehhhhhhZhhhc NM:i:0 +EAS38_8_260_745_595 0 chr1 3242979 255 35M * 0 0 GCTCTTCTGTCAAGAGTACCTGAAATTTATCTGTG hhhhhhhhhhhhhhhhhhhhhhLhhhhhhhhhhfM NM:i:0 +EAS38_8_162_854_426 16 chr1 3243101 255 35M * 0 0 GAAAAAACCTGTCTTGGTCTGAGGTCTGGGCCACT >hhhhhPhhU_XhXZhhhhehhhhhhhhhhhhhhh NM:i:0 +EAS38_8_120_168_509 16 chr1 3243120 255 35M * 0 0 TGAGGTCTGGGCCACTGTTATTCAGAGTGAACAAC AZc^hCcMhhhWhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_219_315_931 16 chr1 3243676 255 35M * 0 0 TTTGTTGAAGGAGAACACAATGAGAGGTGCATATT ]OhYhhchhahhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_180_247_88 16 chr1 3244868 255 35M * 0 0 GCATACTTAAAATTAGGCTGCAATCAGTCTTCCTT _@hhhCJhhhhhhIhhhhShhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_144_513_481 0 chr1 3252847 255 35M * 0 0 AATGGCATTCAGTTAGCTTTAGTGACTGATCCCAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhBC NM:i:0 +EAS38_8_125_631_236 0 chr1 3253217 255 35M * 0 0 TGAGGCATGACCTCCTTTCACTGAATCTTAGTCTT hhhhhhhhhhhhhhhhhhhhhhhhehhhhhLChhh NM:i:1 +EAS38_8_312_169_822 16 chr1 3253312 255 35M * 0 0 AAGGCTAAAATTGCTGTTACCAGCTGCTATGCTTG [JNDIONDhWhhhhhhIhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_10_227_417 0 chr1 3253759 255 35M * 0 0 CAAATTTTAGCTCCTTTCCCAGTTTCCCTCTGGAA hYhhhhhhhhhhhhhhhh`hG_heh\V^hXhUBH? NM:i:0 +EAS38_8_144_231_566 0 chr1 3253759 255 35M * 0 0 CAAATTTTAGCTCCTTTCCCAGTTTCCCTCTGGAA hhhhhhhhhhhhhhhhhhXhghhhhROZWKbU\MM NM:i:0 +EAS38_8_208_276_857 16 chr1 3254072 255 35M * 0 0 TCAACTTCACAAGGAATTTGGAGTGACTGGCCTCC VdMOhLchXhhhh^hhhZhhhhhhh_hhhhhhhhh NM:i:0 +EAS38_8_6_640_930 16 chr1 3254072 255 35M * 0 0 TCAACTTCACAAGGAATTTGGAGTGACTGGCCTCC IHhOhJThchhhhWhhh_hhYhhhhhhhhehhhhh NM:i:0 +EAS38_8_261_856_180 0 chr1 3254263 255 35M * 0 0 GTTCCGCAACACCTGCCCTCACATTCCACTGAACT hhhhhhhhhhhhhhhhhhhhMhThh[NCKQD?DJK NM:i:1 +EAS38_8_97_169_815 0 chr1 3254597 3 35M * 0 0 ATCAGGCTACTTTCAGCAAGCACTTCTTGTCATCT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhAh^hUh NM:i:1 +EAS38_8_250_270_899 0 chr1 3259536 255 35M * 0 0 CTAGATTAGCAGGTAATTTCTAAATCACACATTTA hhhhhhhhhhhhhhhhhhhhhhhhhahUJOhhYhb NM:i:0 +EAS38_8_267_436_563 0 chr1 3273793 255 35M * 0 0 TTTTTTTGTTTGTTTGTTTGTTTTTATACAACAGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhchhh NM:i:1 +EAS38_8_244_916_490 16 chr1 3274218 255 35M * 0 0 GAGCCTAAACCAACCAACCAATGAATATACATAGG ThCYE@AhhhOhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_111_703_424 16 chr1 3274366 255 35M * 0 0 ACAGGGCACATGTTCTTCTAGCTGAGCTGCCTTGT L[gE[hhhhhghhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_224_315_306 16 chr1 3274921 255 35M * 0 0 GGAACTGTGCAAATTGTGTAACTGGAGAAAATAAT hhhh^hh_hhhhhhhhhhhhh`hhhhhhhhhhhhh NM:i:0 +EAS38_8_256_842_769 0 chr1 3277156 255 35M * 0 0 AATGATATTGGTTTGAAGTTCTTTAGCCCCATATT hhhhhhhhhhhhhhhhhhhhhhhhhhhh\hhh]hh NM:i:0 +EAS38_8_292_619_933 0 chr1 3277156 255 35M * 0 0 AATGATATTGGTTTGAAGTTCTTTAGCCTCATATT hhhhhhhhhhhhhhhhhhhhhhhhhhbOLhMhhhh NM:i:1 +EAS38_8_212_928_881 0 chr1 3277700 0 35M * 0 0 TCCTTTTCCTTTCCTTCCTTCCTTCCATCCTTCCT hhhhhhhdZghhaehhTVhhZhhhNT?h^MX]OBQ NM:i:2 +EAS38_8_223_507_484 0 chr1 3277914 255 35M * 0 0 TTCTGAAACTTGAGTACAGTGTTATTACCAATATT hhhhhhhhhhhhhhhhhhhLhhhhhhhKhLbheha NM:i:0 +EAS38_8_264_464_724 0 chr1 3277925 255 35M * 0 0 GAGTACAGTGTTATTACCAATATTCCCCCATTTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhghhhhh NM:i:0 +EAS38_8_97_398_795 0 chr1 3277927 255 35M * 0 0 GTACAGTGTTATTACCAATATTCCCCCATTTTTCC hhhhhhhhhhhhhhhhhhhhhhhLhhhVhhhhh^h NM:i:0 +EAS38_8_271_224_790 16 chr1 3277983 255 35M * 0 0 AGTGATGTCCTAACATGCTTGCTCTCTCATAACCA FhhQ`hhhhhhhhhhhhhhhhhghhhhhhhhhhhh NM:i:0 +EAS38_8_249_919_47 16 chr1 3277988 255 35M * 0 0 TGTCCTAACATGCTTGCTCTCTCATAACCAGACTT K=DFHUhLXhaJSbfLPfhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_264_398_810 16 chr1 3278029 255 35M * 0 0 AGTTTTGTTAGGTTTGCTGGTCTTTTAAAAGGTCT ZghhHhhhhTh[hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_202_252_118 16 chr1 3278057 255 35M * 0 0 AAGGTCTAGATTTTTGTTTCATTATTTTTTTTCTG hhhTDhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_195_472_45 0 chr1 3278134 255 35M * 0 0 CTTTTATTATATTCTTCCTCTTCGTTATTTTGAAT hhhhhhhhhhhhhhhhhhhhhhhPhhh]hhhWENh NM:i:1 +EAS38_8_200_268_981 0 chr1 3278134 255 35M * 0 0 CTTTTATTATATTCTTCCTCTTCGTTAGTTTGAAT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheh NM:i:0 +EAS38_8_87_755_875 16 chr1 3278180 255 35M * 0 0 TTCTCTTAAGTATATGTTCTTATTAACTATTTTTT hhhUhhhhhThhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_184_481_627 16 chr1 3278254 255 35M * 0 0 GAGGCATTTTAGTGTTATGAACTCCCCTTGGCACT NH?=BNI[BT^YdUZ[hKJhhhPhhhhhhhhhhhh NM:i:0 +EAS38_8_241_955_483 16 chr1 3278295 255 35M * 0 0 GACACAGATAGGTTTTTATGTGCTATACTTACATT DbHYMhVhhhVhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_24_420_629 0 chr1 3278309 255 35M * 0 0 TTTATGTGCTATACTTACATTCAGTTCAATGTAAT hhhhhhhhhhhhhhhhhhhhhhhhhhhhfhhhhhh NM:i:0 +EAS38_8_307_620_12 16 chr1 3278356 255 35M * 0 0 TTAGACTTCATTTTCTTCTTCTTTTTGGTTGTGAG IOhKhhJdLhhhJhIeTVZhhhhhhhfWhhhhhhh NM:i:0 +EAS38_8_55_835_895 0 chr1 3278373 255 35M * 0 0 CTTCTTTTTGGTTGTGAGCCTAGCCTTCAACGGTT hhhhhhhhhhhhhhhhhhWWhhhMTIhPTHIhc>D NM:i:1 +EAS38_8_230_275_815 16 chr1 3278376 0 35M * 0 0 TTTTTTGTTTGTGAGCCTAGCCTTCAACGGCTGAG \_NF]RQGZhWPOXPhhhahhhhhhhMhhXhhhhh NM:i:2 +EAS38_8_24_167_957 16 chr1 3278397 255 35M * 0 0 CTTCAACGTCTGAGCCATCTCTCCAGCCCTCTTCT VFA`N?hQ@hhLhehhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_253_546_769 0 chr1 3278576 255 35M * 0 0 TTCCCACTCTCTGGGGCCTCAAGTCTCTCAAATTA hhhhhhhhhhhhhhhhhhhhKRZhhhhh`KMhRTM NM:i:2 +EAS38_8_283_280_992 0 chr1 3278576 255 35M * 0 0 TTCCCACTCTCTGGGGCCTCAAGTCTCTCAAATGT hhhhhhhhhhhhhhhhhhhYhhhFHcBQJHUNK?C NM:i:0 +EAS38_8_4_499_790 0 chr1 3278607 255 35M * 0 0 ATGTTAGGCACATCTCCCACTGATTCCAGACCAGG hhhhhhhhhhhhhhhhe[hhhhUhcVOP`I?LTXH NM:i:0 +EAS38_8_166_353_693 0 chr1 3278725 255 35M * 0 0 GGTTAGTTGAGATTGCTGGTCTTTCTATGGGTTGC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhKhhhFS NM:i:0 +EAS38_8_227_305_410 16 chr1 3278920 255 35M * 0 0 TCAGACCTCTGCTGATCACCTGCATAGTTGGAGAT KJhH@NRIA_B`hhhhhhhhThhhhhhhhhhhhhh NM:i:1 +EAS38_8_151_783_299 16 chr1 3279317 255 35M * 0 0 CTTTTTTGTTCTATAGATATCAATTATTTACCCAC BTS^WdIUehQhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_130_64_600 0 chr1 3280118 255 35M * 0 0 GGTTTCGAGAAAATGTTTTGAAGTGTTTATGCGCT hhhhhhhhhhhhhhhhhhhhhhhhhhhhchKOhSh NM:i:0 +EAS38_8_204_14_612 0 chr1 3280118 255 35M * 0 0 GGTTTCGAGAAAATGTTTTGAAGTGTTTATTCGCT hhhhhhhhhhhhhhhhhhhhfhhhhhhhhhBQhL\ NM:i:1 +EAS38_8_242_889_996 0 chr1 3280118 255 35M * 0 0 GGTTTCGAGAAAATGTTTTGAAGTGTTTATGCGCT hhhhhhhhhhhhhhhhhhhhh^hVhaahgeh@Z?N NM:i:0 +EAS38_8_82_262_363 0 chr1 3280320 255 35M * 0 0 AACATATTTTAAATTCCTCTCAGATTAAGAGAATT hhhhhhhhhhhhehhhhhhhh^hWhKhShWD@hhB NM:i:2 +EAS38_8_111_150_178 0 chr1 3282505 255 35M * 0 0 AGATACATAGAAAAGCTACTTGACTTTAGGTCAAC hhhhhhhhhhhhhhhhhhhhhUfhhhhhQOhh\Sh NM:i:0 +EAS38_8_260_477_698 0 chr1 3282505 255 35M * 0 0 AGATACATAGAAAAGCTACTTGACTTTAGGTCAAC hhhhhhhhhhhhhhhhhhhhhhhhhhhXhhhh`hM NM:i:0 +EAS38_8_187_894_354 16 chr1 3282753 255 35M * 0 0 CTGCACTTGTTTAGAGAAGTGCTGTCTACATGAAG dhNhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_219_350_890 0 chr1 3282806 255 35M * 0 0 TTTTGGAACTTAGGCAAGAATGTTCTTTGGCTCCT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhPVh NM:i:0 +EAS38_8_185_258_316 16 chr1 3282902 255 35M * 0 0 TGAGAGCTAAATGTAAAGCTCAGTAATGCCAGCTC IJhhhhh^hhhhMhhhhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_5_912_317 16 chr1 3284777 255 35M * 0 0 CTCTCGCTCTCTCTCTCTCTCCCCTCACTCCTTTC BPWFbChNSRhFhShehOh_hhhhhhhhhhhhhhh NM:i:1 +EAS38_8_119_362_614 0 chr1 3284967 255 35M * 0 0 TGTACCCTGAGATCAAGTACTTATTGCTTTCACTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_276_838_443 0 chr1 3284967 255 35M * 0 0 TGTACCCTGAGATCAAGTACTTATTGCTTTCACTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhahhhh NM:i:0 +EAS38_8_74_720_526 0 chr1 3286259 255 35M * 0 0 CAAATTGTAGAAAATTTGCATGTGTACTGAACACA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhL NM:i:0 +EAS38_8_273_582_300 16 chr1 3289456 255 35M * 0 0 TCTTCAGTTCTTTGTTAAATATATCATCTGGGTCT HhYchhhQhRhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_232_852_815 0 chr1 3290417 255 35M * 0 0 TTTTTTTTTTTAACTTTCATATGTAGTAGTTATTT hhhhhhhhhhhhh^hhhKhhhhhhhGV^hh[MHhh NM:i:2 +EAS38_8_121_748_181 0 chr1 3290799 255 35M * 0 0 ACCACACCCTGCTGCTCCATATTTCTTATCTTTTT hhhhhhhhhhhhhhhhhhhhhhhhhhh\Bhhhhhh NM:i:1 +EAS38_8_36_138_632 0 chr1 3290826 255 35M * 0 0 AGCTTTTTTTTTTTAACAGCTACTGGGTGGTTTGC hhhhhhhhhhhhhhhhhhhhhOhhbhCXHZLI\BF NM:i:1 +EAS38_8_141_369_534 0 chr1 3290833 255 35M * 0 0 TTTTTTTAACAGCTACTGGGTGGTCTGCATAGCTT hhhhhhhhhhhhhhhhhhhhhhhhhhhfPRLdhhS NM:i:0 +EAS38_8_84_402_647 0 chr1 3290833 255 35M * 0 0 TTTTTTTAACAGCTACTGGGTGGTCTGCCTAGCTT hhhhhhhhhhhhhhhhhhhhhhhhhhVhBhThahe NM:i:1 +EAS38_8_169_576_313 16 chr1 3290912 255 35M * 0 0 ATGCTTCTTTCCACAGTTGAGTGGAATTGTAGGGG hPhRWPJhVLhhhhhh[hhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_279_571_717 16 chr1 3290912 255 35M * 0 0 ATGCTTCTTTCCACAGTTGAGTGGAATTGTAGGGG he\hhYhaOYhhThhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_234_793_825 16 chr1 3290951 255 35M * 0 0 AAAAGACATTTCTGAGTTCTAGCACTCTCAGGTCT hhhhRhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_217_210_636 16 chr1 3290952 255 35M * 0 0 AANGACATTTCTGAGTTCTAGCACTCTCAGGTCTG hh;PYhhWXhh^hhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_168_998_377 0 chr1 3290961 255 35M * 0 0 TCTGAGTTCTAGCACTCTCAGGTCTGGCTTTGACA hhhhhhWhhhhhhhhhhhhTe\YThhOIWJaC@A? NM:i:0 +EAS38_8_179_44_982 16 chr1 3290986 255 35M * 0 0 GCCTTTGACATTAGCTTCCTGACAGGCTGGCAGGT ?@[_GhH[hhhhhEhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_210_147_536 0 chr1 3291026 255 35M * 0 0 TCCTGAAGGTCAGGACTGTGCAAAACTGTCAGGCA hhhhhhhhhhhhhhhhhhhhhhQg`hh^hbGYYPH NM:i:0 +EAS38_8_228_906_499 0 chr1 3291047 255 35M * 0 0 AAAACTGTCAGGCAGCTATTTCAGGAGTGCCTTTT hhhhhhhhhhhhhThhh_hhhhUThYZPVED[@C@ NM:i:2 +EAS38_8_223_934_468 16 chr1 3291092 255 35M * 0 0 GCCCTGGATGATTTTTGAATGGGAATAATCCCTAT RXhf\Phh`hhhhhVhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_27_794_86 16 chr1 3291130 255 35M * 0 0 TCCATATAGGCTCATATATTTAAACACCTAGTCAT X@FSSZhhhADhShhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_205_713_101 16 chr1 3291163 255 35M * 0 0 ATTGTTGGTGGCACTGTCTGTAAGGATCACGAACC CEJLUB`WcgZ]hLhheHahhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_269_175_878 16 chr1 3291192 255 35M * 0 0 CAAACCCATTAGAAGGTAACAACATGCTAAAAAAA eChhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_127_466_820 0 chr1 3291247 255 35M * 0 0 GTGAGGGCTTGTGTTCTCTCTGCTTCCTCTGTGTG hhhhhhhhhhhhhhhhhhhhhhhhhV_hTeSWhhh NM:i:0 +EAS38_8_29_659_107 0 chr1 3291649 255 35M * 0 0 TCCTGAGTTGGGAGGACAGATGAGAAGGGCTTTTT hhhhhhhhhhhhhhhXhhhShhh`PFVhALNChJd NM:i:2 +EAS38_8_210_520_140 16 chr1 3299511 255 35M * 0 0 GAAATAAAGAAAATTCTAATCTACAGGCTGACCAT VhhLDhhhhhhhhVLHShhPhfhhhhhhhhhhhhh NM:i:2 +EAS38_8_45_100_198 0 chr1 3299523 255 35M * 0 0 ATTCTAATCTACAGGCTGACCATACTGTATTTCAC hhhhhhhhhhhhhhhhhhhhhhhZhhIh^hhhhHh NM:i:0 +EAS38_8_145_894_137 0 chr1 3299538 255 35M * 0 0 CTGACCATACTGTATTTCACTAATATAATGGTGTC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhRChhhU NM:i:0 +EAS38_8_231_634_172 16 chr1 3299568 255 35M * 0 0 GTGACAGTGATGCCAGAGAGCTCTAGCTGTGGCTG MHS?]hVChhPhHVhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_68_279_670 16 chr1 3299606 255 35M * 0 0 TGAATACTGGGTAGAAAATAAAAAAATTTACGGAC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_157_544_34 16 chr1 3299684 255 35M * 0 0 TCATAAGATCGGGTAGTTAGTAAACCCTGCCTAGA ?MhFhhHMRZGSdhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_317_518_457 0 chr1 3299798 255 35M * 0 0 GATTTCTGTCTACTAGATCAAAACCTGATAACATA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhMhh NM:i:0 +EAS38_8_87_383_194 16 chr1 3300173 255 35M * 0 0 AAACTACAAAATTGTGGATGTTTGGCTGTTCTTTT hhhSZhhhhhhKhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_220_990_452 16 chr1 3300259 255 35M * 0 0 TGCACCATCTTAGGAGTGAGGGAGGCAGCTGAGTG NHPUJ]hhSPa`ChhhYhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_168_713_356 0 chr1 3307749 255 35M * 0 0 GGTTAACCCGAAGCCAAACTTTTCTTTGTAATTTC hhhhhhhhhhhhhhhhhRhhhhhhhHhRhhIhhhJ NM:i:1 +EAS38_8_222_724_349 0 chr1 3307749 255 35M * 0 0 GGTTAACCCGAAGCCAAACTTTTCTGTGTAATTTC hhhhhhhhhhahhhh`eGhhhhhhhJhPhNKhhhQ NM:i:0 +EAS38_8_223_971_288 16 chr1 3310176 255 35M * 0 0 AATAATCATCACCTGAATGTCATGATCTAAAGGCT hhChhAhh\Ghhh[hhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_288_770_517 0 chr1 3310786 255 35M * 0 0 AGGTTTTGAGTTTTTGATCCAGAGGCTATGTTTAT hhhhhhhhhhhhhhhhgh\h]hQgQH\FS`HRJEW NM:i:0 +EAS38_8_310_958_947 16 chr1 3311201 255 35M * 0 0 CAATTTTTGATCATTCATCTTGTTTTCTTAACAAT hP\hJhh_Hhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_140_291_179 16 chr1 3313701 255 35M * 0 0 ACCGCTGCCTTCCTTTCTTCTCTCCTTCCTTTCTT PW`@dP@hYhKhhhhchh]hZhahhhhhhhhhhhh NM:i:2 +EAS38_8_113_205_724 16 chr1 3318613 255 35M * 0 0 ACCTGGAAGAATTTCATAAAAATTCCCTTCCCAGC HhedLQhhbhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_236_727_634 16 chr1 3318613 255 35M * 0 0 ACCTGGAAGAATTTCATAAAAATTCCCTTCCCAGC Sd]QXehhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_21_827_590 0 chr1 3319045 255 35M * 0 0 TACAAACCAAGAGAAAAATCTGAAAATGAAAAATT hhhhhhhhhhhhhhhhhhhhhh_hhhhhhghhhhh NM:i:0 +EAS38_8_204_62_686 0 chr1 3321977 255 35M * 0 0 AAGCTGGCAATGTTTGGGATATAAACAAGCAAACA hhhhhhhhhhhhhhhhhhhhhhhhhhhahhhh[Yh NM:i:0 +EAS38_8_86_854_652 16 chr1 3324385 255 35M * 0 0 GCAGTGGCTGAGTGATATAACACAGGGATGCAGGT hhhhhhh[hhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_192_343_954 0 chr1 3329232 255 35M * 0 0 CTGCCCTTTTTCTCCCTGCCTATTCATTATAGTTC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhU NM:i:0 +EAS38_8_6_774_928 0 chr1 3330010 255 35M * 0 0 GCACTGTAGCCAGGAGTGACACACAGCAAGGATGC hhhhhhhhhhhhhhhhhhhhhhhN`hUhhhhT`h? NM:i:0 +EAS38_8_256_461_804 16 chr1 3330063 1 23M11637N12M * 0 0 TTTGTTTGTTTGTTTGTTTGTTTGTTTTGACAGGG dhh@ZhhRhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:2 XS:A:+ NS:i:2 +EAS38_8_288_334_735 0 chr1 3330212 0 35M * 0 0 TTATAGCTATAAAAAGTAACATTCTTTGATTGGTC hhQhhhhhKhhQ`hhNKaXAXUaGQQVLOWKRFC> NM:i:1 +EAS38_8_11_615_231 0 chr1 3330440 255 35M * 0 0 ATTGGTTACAAAAAAGTTAGCTTTAACTTTGTAAC hhhhhhhhhhhhhhhhhhhhhhhhIhhhhTLhehR NM:i:1 +EAS38_8_284_883_215 0 chr1 3330528 255 35M * 0 0 ACTAGGCCTCTAGAGTACTTCTAAATTGAGATATT hhhhhhhhhhhhhhhhhhhhhhYhhhhIWEKh`hh NM:i:0 +EAS38_8_30_530_423 16 chr1 3330584 255 35M * 0 0 AGTAGACTTATAGAGATAAGCATTAAAATTTGTAC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_202_722_286 16 chr1 3330653 255 35M * 0 0 ACTTTGTAACGTTAAAGTGATGTTTCTGGTATTGA NB[KZhhcYhhhdhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_214_253_466 16 chr1 3330653 255 35M * 0 0 ACTTGGTAACGTTAAAGTGATGTTTCTGGTATTGA hSN[DRShhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_4_564_326 16 chr1 3330653 255 35M * 0 0 ACTTTGTAACGTTAAAGTGATGTTTCTGGTATTGA ZXSVTYQhehh\hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_142_357_440 16 chr1 3330660 255 35M * 0 0 AACGTTAAAGTGATGTTTCTGGTATTGATCTTTAA hhhhhdhhhhhhhhhhh_hhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_317_782_44 16 chr1 3330660 255 35M * 0 0 AACGTTAAAGTGATGTTTCTGGTATTGATCTTTAA hhFHbhhhhhhbhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_137_536_758 16 chr1 3330697 255 35M * 0 0 TAATAAATTGTTTAAAATTGGGTTTTGCTAACCAA `hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_129_924_268 16 chr1 3330838 255 35M * 0 0 CAATTCACCTATATATTGTAATTAGGATAATTACA BhhhDhhCZhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_48_834_938 0 chr1 3331062 255 35M * 0 0 GTTGTTCTAAATAAAGATTAAATTCAGAATTTATA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_154_283_922 0 chr1 3331674 255 35M * 0 0 TTAACTAGTAAAGAACAAAAGGCTTTGCAGAAAGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh_hhX NM:i:0 +EAS38_8_215_43_278 0 chr1 3331674 255 35M * 0 0 TTAACTAGTAAAGAACAAAAGGCTTTGCAGAAATA hhhhhhhhhhhhhhhhhhh\hhhhhhKhhVONhB@ NM:i:1 +EAS38_8_227_874_535 16 chr1 3341199 255 35M * 0 0 AGACCAAGATGATGGGAACATCTTCTCCACCCCAT =>?NBTPFLEDVHOaEhhhh\hghhYhhhhhhhhh NM:i:2 +EAS38_8_255_514_861 0 chr1 3341232 255 35M * 0 0 ATCAGAATTCCCAAGTCCCTGGGTCTTCAAGTCTC hhhhhhhhhhhhhhhhhhhhhhhhhhhhY^h_RhH NM:i:0 +EAS38_8_135_67_741 16 chr1 3341341 255 35M * 0 0 AACTCAGCTGTTGTATGCTGCCTGGTTGGTGACTC @FHPQGOXhYO[Whhhhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_230_743_701 16 chr1 3341490 255 35M * 0 0 GCTTCTGTCCATTTGTTGGGTATGAGTATCTGCAT NhLahhUKhhhhhcWhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_212_374_788 0 chr1 3341507 255 35M * 0 0 GGGTATGAGTATCTGCATCTTACTCTTTCAGCTGC hhhhhhhhhhhhhhhhghhhhhhhhhhhh\hHhh[ NM:i:0 +EAS38_8_250_863_818 0 chr1 3341507 255 35M * 0 0 GGGTATGAGTATCTGCATCTTACTCTTTCAGGTGC hhhhhhhhhhhhfhh[Ph]hh]\^N`XhLQE>LGD NM:i:1 +EAS38_8_48_225_977 0 chr1 3341551 255 35M * 0 0 TTCTCAGAAGGTAGTTATGCTAGGCTCCTGTCTGC hhhhhhhhhhhhhhhhhhhhhhhhOhSYh\MF]hI NM:i:0 +EAS38_8_83_343_929 16 chr1 3341762 255 35M * 0 0 TCCCCTATTTCTCTACTGAAGGAGGACTCTACCAC TRhhhhhhhbhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_96_862_886 16 chr1 3341818 255 35M * 0 0 CCCCATGATTGTTTTCTTCTCCCTCCCATGTTGAA hhhh^hJhhhhhhhhhbhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_134_781_817 0 chr1 3342105 255 35M * 0 0 ACTCTTTAATAGAGTCTCCTGAAGAGGTAAAAATT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_155_230_356 16 chr1 3342124 255 35M * 0 0 TGAAGAGGTAAAAATTTTAATTTTGACAGTCCAAT ]hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_179_463_472 16 chr1 3347662 255 35M * 0 0 TACCCTTGCGTCAAGGTGTGTTTTCTTACTCAAAT OG?[DIQhbAhdhLhhhhRhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_4_219_976 16 chr1 3347662 255 35M * 0 0 TATCCTTGCCTCAAGGTGTGTTTTCTTACTCAAAT hhhhhhhchhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_79_243_815 16 chr1 3349048 0 35M * 0 0 AAAAAGAGAAACCCTGTCTCAGAAAGAAAAAAAAA ]WhAhHh_hhhhhhehhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_8_133_197_589 0 chr1 3349165 255 35M * 0 0 CACCAGTTCTCCTGTGCATCCTCAGGAGAAATCAT hhhhhhhhhhhhhhhhhhhhhhhhhhUhKSPhUJh NM:i:0 +EAS38_8_188_649_421 0 chr1 3351241 255 35M * 0 0 GTAGATGGACAAACATCTCCCTCACGCATTCTCAG hhhhhhhhhhhhhhhhhhhhhhhhhhhhahhhbP> NM:i:0 +EAS38_8_268_213_808 0 chr1 3355908 255 35M * 0 0 ATCTAACTAAGTAAACTATGTTATAGGAAAGAAAT hhhhhhhhhhhhhhhhhhhh^hhhhhhhhhhZhhZ NM:i:0 +EAS38_8_11_161_707 0 chr1 3355956 255 35M * 0 0 TTTGTCACATGATCAGCATAGTAGATGATGTGTCT hhhhhhhhhhhhhhhhhhhhhhhhhhhPhhhhhHh NM:i:0 +EAS38_8_291_670_580 16 chr1 3356011 255 35M * 0 0 GAAGCAGTTAAAATTGTGTGTGTGTGGTTCTGGAT hV_OXh[VIhXNhP^hhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_44_851_834 16 chr1 3356011 255 35M * 0 0 GAAGCAGTTAAAATTGTGTGTGTGTGTTTCTGGAT ECD@MDGhJXDSAChdhPh]hUhbhhEhhhhhHhh NM:i:1 +EAS38_8_105_754_762 0 chr1 3356093 255 35M * 0 0 TATAGATGTAGTTTATCTCCTAATCCCACCCTTCC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_219_312_881 16 chr1 3356191 255 35M * 0 0 TTTAATTACTTTCCCATCAAAGGCCCATTGAGCAG XZNhNLhHhhZhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_299_450_385 0 chr1 3356483 255 35M * 0 0 ATTCTGGTGGGCTTTCGAGTGTTTCAGTTTCATCT hhhhhhhhhhhhhhhhhVhhhhhhhhhhhhhhhAh NM:i:1 +EAS38_8_52_623_649 0 chr1 3356578 255 35M * 0 0 GGAGCATATGTGAGTAAGCAAATGATGTTCTTGGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhh]hEUNE NM:i:1 +EAS38_8_117_306_426 16 chr1 3359531 255 35M * 0 0 TCAGAGTGTCCACCTCATTCCTCTGGGTCAGTCTT @EN_DgWhhhh_hhhhhhdhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_120_120_744 16 chr1 3361583 255 35M * 0 0 CAAAGACAAGTAGGATAATGCTGAAAGCCCAAGCA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_307_422_12 0 chr1 3362018 255 35M * 0 0 CTGAAAAATTACAGTGTTCTTGTACTGGACACTAC hhhhhhhhhhhhhhhdhSahhKDYGhECFJF@TI? NM:i:2 +EAS38_8_101_691_200 0 chr1 3363077 255 35M * 0 0 CTTTTTTCCATTTTAATGTTTGCATGCAAATCTTA hhhhhhhhhhhhhhhhhXhNhh`hhhhhMhhChhI NM:i:2 +EAS38_8_205_648_802 0 chr1 3363077 255 35M * 0 0 CTTTTTTCCATTTTAATGTGTGCATGCAAATGTTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhZ NM:i:0 +EAS38_8_265_441_688 0 chr1 3363150 255 35M * 0 0 CAGGAATCAATCTCAACCACTTTTCATCTTACTCA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhOhhch NM:i:0 +EAS38_8_53_996_162 0 chr1 3363150 255 35M * 0 0 CAGGAATCAATCTCAACCACTTTTCATCTTACTCA hhhhUhh_hYhUhc^LEHALV^]]MIVE_MMB[MO NM:i:0 +EAS38_8_28_805_359 0 chr1 3363388 255 35M * 0 0 CCAACACCTTATTATCACTTATTTTTGTCATTCTA hhhhhhhhhhhhhhhhhhhhhhhhhhIhhhh@hhZ NM:i:1 +EAS38_8_229_300_432 16 chr1 3363412 255 35M * 0 0 TTGTGATGCTATATATGTGTGCATTAACCACTGCC RObh>QWGShUahhhhBUhNhPhhhhhhhhhhhhh NM:i:2 +EAS38_8_247_121_676 16 chr1 3363412 255 35M * 0 0 TTGTCATGCTATATATTTGTGCATTAACCACTGCC QQMhgLRNfhh[hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_180_822_42 16 chr1 3363658 255 35M * 0 0 GAGTAACTGCTGCATGTTAATCTATGTCATCCCTA MXE@dhhIP__Xhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_83_317_544 0 chr1 3364348 255 35M * 0 0 GCATTTCTGAGCCTGGGTGATCTTACTTTATATTC hhhhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhb NM:i:0 +EAS38_8_194_299_688 16 chr1 3364585 255 35M * 0 0 AAGGATGTTATAATTGAATCATATGGAAGTTCTTT ^hh_h_hhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_42_578_279 0 chr1 3364694 255 35M * 0 0 AAGATGTATTTTTATTTGTTTACTGTATAATTTCC hhhhhhhhhhhhhhhhhhhhhhhhChhhh_hhCP\ NM:i:2 +EAS38_8_309_762_904 16 chr1 3364864 255 35M * 0 0 AAAAGGACATCTGAATTACCTACTTGTTTTTATCA hhhhhFhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_236_498_116 16 chr1 3364885 255 35M * 0 0 ACTTGTTTTTATCAGGTTGGTCTGTAAGCATATCT LI_hhQhhMahh\hhbhFhhh\hhhhhhhhhhhhh NM:i:0 +EAS38_8_184_968_83 0 chr1 3365051 255 35M * 0 0 TAATTGCCAGGAGTTCATTGTTTTCCATATTGTCT hhhhhhhhhhhhhhhhfhhhhhhhh]EhVhhHhUh NM:i:0 +EAS38_8_194_34_599 16 chr1 3367203 255 35M * 0 0 ATTGTGGATATAAGTGGAGAAAGAGCAAGAAAAAA hhHhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_73_896_111 16 chr1 3367203 255 35M * 0 0 ATTGTGGATATAAGTGGAGAAAGAGCAAGAAAAAA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_115_579_578 16 chr1 3369573 255 35M * 0 0 TCAGAGCATTTGGATTTTGGTCTTTAGATTAAGGT ^hhhhhhhhXhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_260_546_322 16 chr1 3369573 255 35M * 0 0 TCAGAGCATTGGGATTTTGGTCTTTAGATTAAGGT >>NELH=IJ@@@QIMBDDKOS\KJfhhh[Phhhhh NM:i:1 +EAS38_8_168_10_541 16 chr1 3375680 255 35M * 0 0 CCGTGCAGACATTCTGATGTTGGGTAATATCAAAT LT>IKNhhhWhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_8_316_251_752 0 chr1 3377312 255 35M * 0 0 TCACAATATTGTCTATACTTCTAAACATCCTCAGA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhchhh NM:i:0 +EAS38_8_127_130_231 0 chr1 3379889 255 35M * 0 0 AATAAATTTCTCTTGTTTGCAAGCTATCTACTCTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhbhhhhe NM:i:1 +EAS38_8_262_614_438 0 chr1 3379889 255 35M * 0 0 AATAAATTTCTCTTGTTTGCAAGCTATCTACTCTA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhA NM:i:1 +EAS38_8_152_675_620 0 chr1 3379983 255 35M * 0 0 ATCACACTTCAATTTTCATTTTCCAGCAAAAGCTT hhhhhhhhhhhhhhhhhhhhhhhhhhhghZhhhhh NM:i:2 +EAS38_8_315_641_621 16 chr1 3380977 255 35M * 0 0 CATTTATTCTATGTCAATTTATCTTTTGAGTATAA hhhhhhahhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_223_839_518 16 chr1 3381656 255 35M * 0 0 GTCCTTTTTCTAGTGTCGTGTTTAAGCTCCCGTGA PVLMUG`YLSVhaNhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_189_893_589 16 chr1 3382043 255 35M * 0 0 GCAGAGCCTCTGTGTCATTGCCTGGCAGGTAGGAG =L`KeShhhhdhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_8_228_882_739 0 chr1 3383793 255 35M * 0 0 TGGTGAGTATTGGAACGACTAAATCAGTGTATTAA hhhhhhhhhhhhhhh]hhfhhhh]^]hehbghNHO NM:i:0 +EAS38_8_290_281_824 16 chr1 3386732 255 35M * 0 0 GTAGAAAACTGGATTTTTTTTTTTTGGTGATATAG `GUEhEhhhd\hhhhhhhhhhhhhhhhhhhhhhhh NM:i:1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_in2.sam Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,400 @@ +EAS38_1_126_860_867 16 chr1 3009675 0 35M * 0 0 ATAGTCCCTTACTGCTTTTAGTATTCTATCTTTAT WFGAeC\gVShhhLh`hhPbPhhhhhhhhhhhhhh NM:i:2 +EAS38_1_125_842_97 0 chr1 3023056 0 35M * 0 0 ATCTTCTTCAATTTGTTTCTTCAGAGACTTTAATT hhhhhhhhhhhhhhhhhhhhhhhJhhNhhh_KINh NM:i:2 +EAS38_1_261_52_728 16 chr1 3035247 0 35M * 0 0 AATCCCCCACCCCACAGGAACAAAGTCCTGATGCA @???GIH@C?HXINLQJ=VVhhgTFHfhYhhJLhb NM:i:2 +EAS38_1_71_500_217 16 chr1 3081731 0 35M * 0 0 AGGAGATAAATAACTAATAAAAAATGAAAAAAAAA h?DhLhFhfhKhRFhhhShhhhhhThhhhhhhhhh NM:i:2 +EAS38_1_2_666_566 0 chr1 3111450 255 35M * 0 0 CCACTCACAAGACAAGACCAGGATCCTGGAGAGAT hhhhhhhhhhhhhhNh^Yh]d]GRNVYURK^JU>I NM:i:0 +EAS38_1_220_990_991 0 chr1 3111546 255 35M * 0 0 AAAAGCTGAGAGTCAGCATGAATCAAGAGATAGAA hhchhMabNhP_>BKXQSNKDRD?@@TBJJ=GL@G NM:i:1 +EAS38_1_133_518_728 0 chr1 3111550 255 35M * 0 0 GCTGAGAGTCAGCATGAATCCAGAGATAGAAAAAG hhhhhhhhhhhhhhhhhhhOhQhhhNL^ZT[PLNN NM:i:0 +EAS38_1_219_471_934 0 chr1 3117684 255 35M * 0 0 TGTCCTTTGGCTTACAGAAGTTTTATAATTTTATG hhhhhhhhhhhhhhhhhhhhhhhhRhhehhhh]hH NM:i:0 +EAS38_1_180_265_430 16 chr1 3131249 0 35M * 0 0 TGATCAGCCCTTTGGCATTCCTCAGTTGAGAATTC GICHVhhCY`\TYhhhh[fdhhhhhhhhhhhhhhh NM:i:2 +EAS38_1_155_516_677 0 chr1 3137065 0 35M * 0 0 CTGGAATTATGTGATTATAATTTTCTTATCATTTT hhhhhhhhhhhhhhhhhhhhhhhhhhh`Dhhhhhh NM:i:1 +EAS38_1_156_788_924 0 chr1 3137065 0 35M * 0 0 CTGGAATTATGTGATTATAATTTTCTTAGCATTTT hhhhhhhhhhhhhhhhhhhhhhhhbhhhh]Shhhh NM:i:0 +EAS38_1_219_907_956 0 chr1 3137065 0 35M * 0 0 CTGGAATTATGTGATTATAATTTTCTTAGCATTTT hhhhhhhhhhh\hhhhhhhhRhhh^hhg`h\hhhh NM:i:0 +EAS38_1_224_924_816 0 chr1 3137074 0 35M * 0 0 TGTGATTATAATTTTNTTAGCATTTTCTTCGTAAA hhhhhhhhhhhhhhh;hhhhh`hhhhhhhXhhhg] NM:i:2 +EAS38_1_128_932_926 16 chr1 3137133 0 35M * 0 0 GTTGGTGTATAGTAAAAAGTAAAGAAATTCTGAGA XYV[Lhfhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_146_271_903 16 chr1 3137133 0 35M * 0 0 TTTGGTGTATAGTAAAAAGTAAAGAAATTCTGAGA HVhT[`hhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_127_823_362 0 chr1 3137183 0 35M * 0 0 GATAATACATATATACATATGCAGTGTGTGTGCCA hhhhhhhhhhhhhhhhhhhhhhhXhhhhhhhNU[H NM:i:0 +EAS38_1_282_34_255 16 chr1 3137183 0 35M * 0 0 GATAATACATATATAAATATGCAGTGTGTGTGCCA KhNhhLhQh\h`hJhCh`h^hLhhdhhhhhhhheh NM:i:1 +EAS38_1_215_971_567 0 chr1 3137204 0 35M * 0 0 CAGTGTGTGTGCCAGTGGTGTTAACAATACTAATA hhhhh[hhhhhhhhh\hSQeLYcVFKGAKH]XD^H NM:i:1 +EAS38_1_143_6_639 16 chr1 3137450 0 35M * 0 0 ATGTTCCCACACGGTCTATCTCCCTGACAAATCCC RH?>EJUcHhhILIhFhhYShb`hhhhhhhhchhh NM:i:2 +EAS38_1_132_603_749 0 chr1 3154107 255 35M * 0 0 TATATTTGGAAAAAAAAAGAAAGGAGTGTAGAGTC hhhhhhhhhhhhhhhhhhhhhhhhhhehhhhPhSS NM:i:0 +EAS38_1_238_595_598 0 chr1 3178632 0 35M * 0 0 GCTTTTTGCTTTTTGCTTTTTGCTTTTTGCTTTTT hhhhhhhhhhhhhhdhhhhhhOhhhhhhLXhhhhh NM:i:0 +EAS38_1_238_595_598 0 chr1 3178639 0 35M * 0 0 GCTTTTTGCTTTTTGCTTTTTGCTTTTTGCTTTTT hhhhhhhhhhhhhhdhhhhhhOhhhhhhLXhhhhh NM:i:0 +EAS38_1_238_595_598 0 chr1 3178646 0 35M * 0 0 GCTTTTTGCTTTTTGCTTTTTGCTTTTTGCTTTTT hhhhhhhhhhhhhhdhhhhhhOhhhhhhLXhhhhh NM:i:0 +EAS38_1_238_595_598 0 chr1 3178653 0 35M * 0 0 GCTTTTTGCTTTTTGCTTTTTGCTTTTTGCTTTTT hhhhhhhhhhhhhhdhhhhhhOhhhhhhLXhhhhh NM:i:0 +EAS38_1_118_1000_212 0 chr1 3179061 0 35M * 0 0 ATGTGATTTTAAATCATAGTCTTGCTTTTCCATTG hhhhhhhhhhhhghhhEMDPKhhLNh[hhMPNETJ NM:i:2 +EAS38_1_311_90_296 16 chr1 3179539 255 35M * 0 0 ACATAGGAAATGGAAGAGTACTTTATTATTATTAT bEhIhhhhTCNhhhhhhhVhRQhhhhhhhhhhhhh NM:i:1 +EAS38_1_221_489_194 16 chr1 3183282 3 35M * 0 0 ACTGACAGAAAAGAGACAGAGGTAGGACTTCTAGG >>FL[@RL@^WSRYUP@`UZeSLhhRQbOGWThhh NM:i:2 +EAS38_1_221_489_194 16 chr1 3183945 3 35M * 0 0 ACTGACAGAAAAGAGACAGAGGTAGGACTTCTAGG >>FL[@RL@^WSRYUP@`UZeSLhhRQbOGWThhh NM:i:2 +EAS38_1_205_642_159 16 chr1 3186543 255 35M * 0 0 CACATGCCTTTTTCATTTTTTCCAAGTGCCATCTG KhUhSHT]VS]_hFhhMhDbheHhhhhhhhhhhhh NM:i:0 +EAS38_1_26_282_635 16 chr1 3188051 255 35M * 0 0 TTCTGATCCTCAGGATCTGGAGTTACAGATGGTTG ECaSghKhh]ZhhhhdhVhhhh]hhhhhhhhhhhh NM:i:0 +EAS38_1_221_487_440 16 chr1 3188179 255 35M * 0 0 TTACTAAATTTTGTAATACTACTTAGTCTGGAAAA Oge[WhhhTKRShhhhbhhYhhchhh]hhhhhhhh NM:i:0 +EAS38_1_7_602_714 16 chr1 3188938 255 35M * 0 0 GACTGTCATTACATTATTTTAGTAGTTGTATTTTC A\h^SLhhChQhhhhhhhhUhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_239_803_441 16 chr1 3189316 255 35M * 0 0 AGATGTATCATAGCTCAGAAAGTACATTTGTAAGA hhhVhWhRJhYhh^Wbhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_318_649_84 16 chr1 3189316 255 35M * 0 0 AGATGTATCATAGCTCAGAAAGTACATTTGTAAGA hhh\hhhhKhhhhKMhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_178_556_269 0 chr1 3189808 255 35M * 0 0 CTTTTTTTAAAATGACCACAGTGTACTTTATTTAA hhhhhhhhhhhhhhhhhhhhLhhhXhhhhZhhhhX NM:i:2 +EAS38_1_184_810_767 16 chr1 3189830 255 35M * 0 0 GTACTTTATTTAATGATTTTTGTACTTTGTGTTGC dhah]hhhhhhhhhchh_hhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_307_56_994 16 chr1 3189841 255 35M * 0 0 AATGATTTTTGTACTTTGTGTTGCAATAAAATAAA hh[Shhhhhh`hhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_1_924_497 16 chr1 3189853 255 35M * 0 0 ACTTTGTGTTGAAATAAAATAAAAAAAAAATCTAC SNT[Za]ahh]Lhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_95_808_182 0 chr1 3189880 255 35M * 0 0 AAATCTACAAAATTCAAATATATAAAATTTCAAGT hhhhhhhhhhhhhhhehhhhhhhhhMhhhhh\h^h NM:i:0 +EAS38_1_43_924_188 0 chr1 3189887 255 35M * 0 0 CAAAATTCAAATATATAAAATTTCAAGTTTTCTTT hhhhhhhhh^Xhhhh?hh[RhhhhOMDhhhhhhhh NM:i:0 +EAS38_1_11_826_352 16 chr1 3189890 255 35M * 0 0 AATTCAAATATATAAAATTTCACGTTTTCTTTGTT hhIQAhhhShchchhhhUNU[hChhehhhhbhAhh NM:i:2 +EAS38_1_131_730_378 16 chr1 3189892 255 35M * 0 0 TTCAAATATATAAAATTTCAAGTTTTCTTTCTTTT HIhhhhhhhhhhhhhhhZhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_317_700_555 16 chr1 3189893 255 35M * 0 0 ACAAATATATAAAAGTTCAAGTTTTCTTTCTTTTA ?hhhhhh[hThhhhHhYhEhhhhhhhhhhhhhhhh NM:i:2 +EAS38_1_46_519_952 0 chr1 3189903 255 35M * 0 0 AAAATTTCAAGTTTTNTTTCTTTTAAAGTTTTACA hhhhhhhhhhhhhhh;hhhhhhhhhhhhhhhhhPf NM:i:1 +EAS38_1_26_849_836 0 chr1 3189906 255 35M * 0 0 ATTTCAAGTTTTCTTTCTTTTAAAGTTTTACAAGA hhhhhhhhhhhhhhhhhhhhhdhhhhhhhhhhNXU NM:i:0 +EAS38_1_271_964_726 0 chr1 3189906 255 35M * 0 0 ATTTCAAGTTTTCTTACTTTTAAAGTTTTACAAGA hhhhhhhhhhhhhhhCXhhhhhhhHhhhhhhVhhh NM:i:1 +EAS38_1_305_225_753 16 chr1 3189909 255 35M * 0 0 TCAAGTTTTCTTTCTTTTAAAGTTTTACAAGAAAA Zhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_210_231_735 16 chr1 3189912 255 35M * 0 0 AGTTTTCTTTCTTTTAAAGTTTTACAAGAAAAAAA hhVhhhhhh_hhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_210_55_110 0 chr1 3189915 255 35M * 0 0 TTTCTTTCTTTTAAATTTTTACAATAAAAAAAATC hhhhhhhhhhhhUPh\hhhhdhLRcCLTRW@FMhh NM:i:2 +EAS38_1_230_130_609 16 chr1 3189915 255 35M * 0 0 TTTCTTTCTTTTAAAGTTTTACAAGAAAAAAAATC TDMO]K^FLYWWhhhh[S^Rhhhh^hhhhhhhhhh NM:i:0 +EAS38_1_203_262_383 16 chr1 3189917 255 35M * 0 0 TCTTTCTTTTAAAGTTTTACAAGAAAAAAAATCAG ]hJh[ahhhPhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_23_872_103 0 chr1 3189918 255 35M * 0 0 CTTTCTTTTAAATTTTTACAATAAAAAAAATCAGA hhhhhhhhhb_[Dhhhhhh[XAT[hUfKFhhVTM> NM:i:2 +EAS38_1_74_546_492 0 chr1 3189937 255 35M * 0 0 AAGAAAAAAAATCAGATAACCGAGGAAAATTCTTC hhhhhhhhhhhhhhh`h]hhhhThaRPOOhhBhhX NM:i:1 +EAS38_1_177_466_463 0 chr1 3189943 255 35M * 0 0 AAAAATCAGATAACCGAGGAAAATTATTCATTATG hhhhhhhhhhhhhhhhOhMSIIhhhdhh\hhhfhB NM:i:0 +EAS38_1_326_846_82 0 chr1 3189943 255 35M * 0 0 AAAAATCAGATAACCGAGGAAAATTATTCATTATT hhhhhhhhhhhhhhhh]hJdRdhhhZhhhYhbhhG NM:i:1 +EAS38_1_235_891_810 0 chr1 3189957 255 35M * 0 0 CGAGGAAAATTATTCATTATGAAGTACTACTTTCC hhhhhhhhhhhhhhhhhhhhhhhhh_HhOJhhPWI NM:i:0 +EAS38_1_73_865_289 16 chr1 3189961 255 35M * 0 0 GAAAATTATTCATTATGAAGTACTACTTTCCACTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_201_984_898 0 chr1 3189963 255 35M * 0 0 AAATTATTCATTATGAAGTACTACTTTCCACTTCA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_37_723_474 16 chr1 3189968 255 35M * 0 0 ATTCATTATGAAGTACTACTTTCCACTTCATTTCA hHEJhFThZhhhhXhUShhhhhhhhhXhhhhhhhh NM:i:0 +EAS38_1_183_791_724 0 chr1 3189973 255 35M * 0 0 TTATGAAGTACTACTTTCCACTTCAGTTCATCACA hhhhhhhhhhhhhhhhhafhhhhdWBhhPYhHPh[ NM:i:1 +EAS38_1_69_87_770 16 chr1 3189978 255 35M * 0 0 AAGTACTACTTTCCACTTCATTTCATCACAAATTG hhJhghhhhhhghhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_54_211_781 16 chr1 3189984 255 35M * 0 0 TACTTTCCACTTCATTTCATCACAAATTGTAACTT hghhhLhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_203_766_573 16 chr1 3189985 255 35M * 0 0 ACTTTCCACTTCATTTCATCACAAATTGTAACTTA SQPbUhhZhhhhhhhWhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_195_866_158 0 chr1 3189991 255 35M * 0 0 CACTTCATTTCAACACAAATTGTAACTTACTTAAC hhhhhhRhhhhh@hchHOThhRh[F`hhPShbNSI NM:i:1 +EAS38_1_122_739_820 16 chr1 3190001 255 35M * 0 0 CATCACAAATTGTAACATACTTAACTGACCAAAAA hhXhfYhhhhSORhhhAghhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_144_950_152 16 chr1 3190008 255 35M * 0 0 AATTGTAACTTACTTAACTGAACAAAAAAACTATG hhIIc_hhI[\hHghhhYhhhHhhhhhhhhhhhhh NM:i:1 +EAS38_1_168_613_587 0 chr1 3190008 255 35M * 0 0 AATTGTAACTTACTTAACTGACCAAAAAAACTATG hhhhhhhhhhhhhhhhhhhhgh`SNhfhhRahZf\ NM:i:0 +EAS38_1_134_699_616 16 chr1 3190013 255 35M * 0 0 TAACTTACTTAACTGACCAAAAAAACTATGGTACT hhhQhMhhehhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_210_777_789 0 chr1 3190014 255 35M * 0 0 AACTTACTTAACTGACCAAAAAAACTATGGTACTG hhhhhhhhhhhhhhhWfh\`hHhhShgYhXGZIQU NM:i:0 +EAS38_1_66_446_787 0 chr1 3190014 255 35M * 0 0 AACTTACTTAACTGACCAAAAAAACTATGGTACTG hhhhhhhhhhhhhhhhhhhhhhh]dhhhhdghShh NM:i:0 +EAS38_1_179_978_676 16 chr1 3190032 255 35M * 0 0 AAAAAACTATGGTACTGCAGTATAGCAAATACTCC hhhhhghWhZhFhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_308_776_503 16 chr1 3190032 255 35M * 0 0 AAAAAACTATGGTACTGCAGTATAGCAAATACTCC hhhhhh^?hRhThhhghbhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_172_693_734 16 chr1 3190040 255 35M * 0 0 ATGGTACTGCAGTATAGCANATACTCCACACACTG hLD?UFaLLhaJhhhh[hh;hhhhhhhhhhhhhhh NM:i:1 +EAS38_1_239_423_396 16 chr1 3190040 255 35M * 0 0 AGGGTACTGAAGTATAGCAAATACTCCACACACTG _AH?>LADTCZh^h]hhDhhhZhhehhhhhhhhhh NM:i:2 +EAS38_1_284_912_582 16 chr1 3190042 255 35M * 0 0 GGTACTGCAGTATAGCAAATACTCCACACACTGTG LhhhhhhhhhhhhhhWhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_209_687_576 0 chr1 3190073 255 35M * 0 0 TGTGCTTTGAGCTAGAGCACTTGGAGTCACTGCCC hhhhhhhhhhhhhhhdhhZdhhYhPMhRPIeMWGP NM:i:0 +EAS38_1_185_490_551 16 chr1 3190085 255 35M * 0 0 TAGAGCACTTGGAGTCACTGCCCAGGGCAGCAGCC FJDFJGJJODb\`hJQ_hNghhhhhhhh`hhhhhh NM:i:0 +EAS38_1_65_838_419 0 chr1 3190102 255 35M * 0 0 CTGCCCAGGGCAGCAGCCTCCAACCAAGAAAGACA hhhhhhhhhhh]_hKhhchceBdGaOCG@?BGIIP NM:i:0 +EAS38_1_323_255_975 0 chr1 3190107 255 35M * 0 0 CAGGGCAGCAGCCTCCAACCAAGAAAGACACACTT hhhhhhhh\hhUShNYh]@Uh\hMXMaJ?YRRBFH NM:i:0 +EAS38_1_296_538_461 0 chr1 3190126 255 35M * 0 0 CAAGAAATACACACTTACAAGTTGAATTCTAAAGG hhhhhhhhhhhhhhhhhh]hhhhh\hhhhhMhbhh NM:i:1 +EAS38_1_132_195_514 16 chr1 3190129 255 35M * 0 0 GAAAGACACACTTACAAGTTGAATTCTAAAGGAAG chbhhhShFhhYhhghhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_155_895_725 16 chr1 3190140 255 35M * 0 0 TTTCAAGTTGAATTCTAAAGGAAGGTCTGGTTATG VhO[ghWSchhh_hZhhhhhhhhhXhhhhhhhhhh NM:i:1 +EAS38_1_193_609_633 16 chr1 3190140 255 35M * 0 0 TTACAAGTTGAATTCTAAAGGAAGGTCTGGTTATG Q`hbhhh[hhhhShhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_135_816_228 16 chr1 3190142 255 35M * 0 0 AAAAGTTGAATTCTAAAGGAAGGTCTGGTTATGTG fC_]SH_VhhIABLhhhhfhhhWfZhhhhhhhhhh NM:i:1 +EAS38_1_145_593_539 0 chr1 3190150 255 35M * 0 0 AATTCTAAAGGAAGGTCTGGTTATGTGGGGTTGTA hhhhhhhhhhhhhhhhhhhhhhhhQh`ShhhhhAH NM:i:1 +EAS38_1_121_577_810 16 chr1 3190177 255 35M * 0 0 GGGTTGGAGTATGTATATCTATATATCTCTATATA KJM]OSdhbXhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_194_207_828 0 chr1 3190207 255 35M * 0 0 ATATATATTTACATCAAAGAATTTAATAACTCATT hhhhhhhhhhhhhhhhhhhhhhhhchhTh_h_`hh NM:i:0 +EAS38_1_113_803_974 0 chr1 3190221 255 35M * 0 0 CAAAGAATTTAATAACTCATTTAAATTTTTGTTTC hhhhhhhhhhhhhhhchQhhhhhgOhh_hhh_hhL NM:i:0 +EAS38_1_160_812_510 16 chr1 3190244 255 35M * 0 0 AATTTTTGTTTCAAATAAAATTCCAAATACACTTG hhWOhG]h^hhQhhhhhhhhh_\hhhhhhhhBhhh NM:i:1 +EAS38_1_40_88_508 16 chr1 3190249 255 35M * 0 0 TTGTTTCAAATAAAATTCCAAATACATTTGTACAA QhhgVhdhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_84_935_631 16 chr1 3190249 255 35M * 0 0 TTGTTTCAAATAAAATTCCAAATACATTTGTACAA ^]hJhZWhhhhhhhhhUhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_36_762_603 0 chr1 3190263 255 35M * 0 0 ATTCCAAATACATTTGTACAATGTTTACAAAGTAA hhhhhhhhhhhhhhhhhhhhhh^hhhhahX\]_hb NM:i:0 +EAS38_1_16_788_728 16 chr1 3190265 255 35M * 0 0 TCCAAATACATTTGTACAATGTTTACAAAGTAAGA @hEhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_172_782_398 16 chr1 3190269 255 35M * 0 0 AATACATTTGTACAATGTTNACAAAGTAAGAGACA hhZhhhaZhhWhhhhhheh;hThhhhehhhhhhhh NM:i:1 +EAS38_1_319_78_862 16 chr1 3190274 255 35M * 0 0 ATTTGTACAATGTTTACAAAGTAAGAGACAGGACT dLhZM_ehdhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_27_817_428 16 chr1 3190276 255 35M * 0 0 TTGTAAAATGTTTACAAAGTAAGAGACAGGACTGG VPhchChh_ghfhhEhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_188_256_713 0 chr1 3190325 255 35M * 0 0 AGGCCAGGCACCGTGATGTCCGGGTGATATATCTT hhhhhhhhhhhhhhhKhhaMhUhhNgA_E[GhM[G NM:i:0 +EAS38_1_315_859_502 16 chr1 3190329 255 35M * 0 0 CAGGAACCGTGATGTCCGGGTGATATATCTTCACG BNSIKHNI\SK]VdXZR`Uhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_152_381_800 16 chr1 3190355 255 35M * 0 0 ATCTTCACGTTGCCTGCACACACCTTATTTCTGAA ZVhQIhhhhhhXhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_282_558_872 0 chr1 3190364 255 35M * 0 0 TTGTCTGCACACACCTTATTTCTGAAATGGAGAGA hhh=hhhhhhhhh_hhhhhhhYhh`hhhhhQhhhC NM:i:1 +EAS38_1_215_759_830 0 chr1 3190407 255 35M * 0 0 AGAATGTCACCGACTATGCATCAGAATACTATGTA hhhhhhhhhhhhhhhhhhh_hh[hUWhhbh^hhXc NM:i:0 +EAS38_1_277_471_798 16 chr1 3190412 255 35M * 0 0 GTCACCGACTATGCATCAGAATACTATGTACAGTT KJYK\eYhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_279_405_802 16 chr1 3190418 255 35M * 0 0 GACTATGCATCAGAATACTATGTACAGTTGAAGTT Chhhhhhhhhhhhhhhhhhhhhhhhh`hhhhhhhh NM:i:0 +EAS38_1_75_573_457 16 chr1 3190428 255 35M * 0 0 CAGAATACTATGTACAGTTGAAGTTAGGGAGCTGA Zhdhh_dhYhRh\hhhhUKhhhhhUhhhhhhhhhh NM:i:0 +EAS38_1_238_427_419 16 chr1 3190444 255 35M * 0 0 GTTGAAGTTAGGGAGCTGAGAACCTAGTGGTCTGT XKEQdhhNKZhhhhhhdhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_24_788_817 0 chr1 3190444 255 35M * 0 0 GTTGAAGTTAGGGAGCTGAGAACCTAGTGGGCTGT hhhhhhhhhhhhhQhHhhUeK_AGXKhNfe>=ITO NM:i:1 +EAS38_1_307_22_417 16 chr1 3190449 255 35M * 0 0 AGTTAGGGAGCTGAGAACCTAGTGGTCTGTTCTCT KU@DX`XWbV@JhghhTETVhh^hTWh_hh[hhhh NM:i:0 +EAS38_1_104_731_910 0 chr1 3190455 255 35M * 0 0 GGAGCTGAGAACCTAGTGGTCTGTTCTCTTCTGGT hhhhhhhhhhhJYhhhhhhZOhhhhBhF\hFhhaO NM:i:0 +EAS38_1_189_367_978 16 chr1 3190466 255 35M * 0 0 CCTAGTGTTCTGTTCTCTTCTGGTTTGTCTTCATC HhCMIbQEShcKTYhhh\hhhYPhhhhhhhhhhhh NM:i:1 +EAS38_1_288_697_269 0 chr1 3190470 255 35M * 0 0 GTGGTCTGTTCTCTTCTTGTTTGTCTTCATCTACC hhhhhhhhhhhhhhhhhBChhhDhhhhhQhhhI?c NM:i:1 +EAS38_1_239_232_371 16 chr1 3190490 255 35M * 0 0 GTGTCTTAATCTACCAGCTATTACTCCTCTTTTGC DKK?ADHAhKCIhVhhhB_hchhhbhhZhhhhhhh NM:i:2 +EAS38_1_17_329_620 16 chr1 3190509 255 35M * 0 0 ATTACTCCTCTTTTGCTCAGAGATAAATTTAAAAT h^E_hMhchhhThVhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_145_66_863 0 chr1 3190520 255 35M * 0 0 TTTGCTCAGAGATAAATTTAAAATACAAACATTGG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc NM:i:0 +EAS38_1_318_476_736 0 chr1 3190562 255 35M * 0 0 AAGGAGAAAAGCACAAAATATTTAAGGCAAATTAA hhhhhhhhhhhhhhhhhhhhhhhhfhh^hF\hhhH NM:i:0 +EAS38_1_91_887_139 16 chr1 3190577 255 35M * 0 0 AAATATTTAAGGCAAATTAAGCAAATATGTACAGT hhhhhK^ThhZhThhh\hhhhZhhhhhhhhhhhhh NM:i:0 +EAS38_1_42_628_869 16 chr1 3190582 255 35M * 0 0 TTTAAGGCAAATTAAGCAAATATGTACAGTCTCTT EYEhhBDYhhh^hhhLhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_266_296_122 16 chr1 3190587 255 35M * 0 0 GGAAAATTAAGAAAATATGTACAGTCTCTTTGTGC hUJhhh@ehhhFhhhShIhehhhh`h\hhbhhhhh NM:i:2 +EAS38_1_296_47_651 0 chr1 3190588 255 35M * 0 0 GCAAATTAAGCAAATATGTACAGTCTCTTTTTTCC hhhhhhhhhhhhhhhhhhhhh[hhhhhhhhDhIRE NM:i:2 +EAS38_1_298_622_554 16 chr1 3190612 255 35M * 0 0 CTCTGTGTGCCAGGAGGATGTGACTTTCTTTTTAA QXfIBXhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_55_346_335 16 chr1 3190613 255 35M * 0 0 TCGGTGTGCCAGGAGGATGTGACTTTCTTTTTAAA KABCGhGh@hhhhhhhhhh^hhhhhhhhhhhhhhh NM:i:2 +EAS38_1_144_104_681 16 chr1 3190646 255 35M * 0 0 AATCCCAAACCATGCTTTAAAAAATTCAAATAAAG hhVhJThhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_307_505_905 0 chr1 3190650 255 35M * 0 0 CCAAACCATGCTTTAAAAAATTCAAATAAAGCAAG hhhhhhhhhhhhhhhhhhhhhhhhShhhh_h\`hh NM:i:0 +EAS38_1_4_468_915 0 chr1 3190667 255 35M * 0 0 AAATTCAAATAAAGCAAGTCTGGTGTGAGTTGGGT hhhhhhhhhhhhhhhhhhhhhhhahfhJhhhhhha NM:i:0 +EAS38_1_177_100_872 0 chr1 3190682 255 35M * 0 0 AAGTCTGGTGTGAGTTGGGTTGCTTGTGTTGTTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhThhhhh NM:i:0 +EAS38_1_201_448_983 0 chr1 3190733 255 35M * 0 0 TGTTTTGCACAAAATAACCATTTGGAATTTGCAGT hhhhhhhahhhhhhhhhZMhhhhhhNhhhhXGXhH NM:i:0 +EAS38_1_205_905_511 16 chr1 3190740 255 35M * 0 0 AACAAAATAACCATTTGGAATTTGCAGTGGAATAA hhFhhhhahhhhhhahhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_22_834_621 0 chr1 3190741 255 35M * 0 0 ACAAAATAACCATTTGGAATTTGCAGTGGAATAAT hhhhhhhhhhhhhhhhhYhhhhhh]h]h[NVhI`h NM:i:0 +EAS38_1_297_847_594 16 chr1 3190753 255 35M * 0 0 TTTGGAATTTGCAGTGGAATAATTTGTTAATTGTG `KYZ\hX^dhYhhhhbhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_105_929_305 16 chr1 3190768 255 35M * 0 0 GGAATAATTTGTTAATTGAGAAGTGTATGGTTTTG hhhhhhhQ]hhhhhh_hhEhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_323_29_609 0 chr1 3190771 255 35M * 0 0 ATAATTTGTTAATTGTGAAGTGTATGGTTTTGTAT hhhhhhhhhhhhhhhhhhhOhhhhhhhhhhh@hGh NM:i:0 +EAS38_1_174_674_495 0 chr1 3190781 255 35M * 0 0 AATTGTGAAGTGTATGGTTTTGTATTTTTAAACCA hhhhhhhhhhhhhhhhhhhhhFhhhhhhLUPaeSG NM:i:1 +EAS38_1_156_965_73 16 chr1 3190814 255 35M * 0 0 CAAAAAACAGTAGCTGAGGTAGTTAAATGTGAAAC DhhhCghNhhhhhRhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_264_136_776 0 chr1 3190842 255 35M * 0 0 GTGAAACTTACACAACTTAAAATAATGAGAGAATG hhhhhhhhhh`hbhhYhhbh_eh_hhbM\O]IVYR NM:i:0 +EAS38_1_269_103_855 16 chr1 3190853 255 35M * 0 0 ACAACTTAAAATAATGAGAGAATGGAGAACCAATG ShhhhhXhhhhchhLhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_133_823_893 0 chr1 3190856 255 35M * 0 0 GCTTAAAATAATGAGAGAATGGAGAAACAATGTAA hhhhhhhhhhhhhhhbhhVhhhahQZ@KZhSUKgH NM:i:2 +EAS38_1_316_626_26 0 chr1 3190872 255 35M * 0 0 GAATGGAGAACCAATGTAAGGAGCCCAGACTCTTG hhhhhhhhhh]hhhhh^hXNhhXLcGGFEMVIL\A NM:i:0 +EAS38_1_14_936_623 0 chr1 3190882 255 35M * 0 0 CCAATGTAAGGAGCCCAGACTCTTGCCATCTGGGA hhhhhhhhdhhhhYTbFhTWehhNJdKDJVREM?E NM:i:1 +EAS38_1_112_85_814 16 chr1 3190885 255 35M * 0 0 ATGTAAGGAACCCAGACTCTTGCCATCTGGAAGCA dBCDhhRNh?RhWhWhhWhZh[hhhhhhhhhhhhh NM:i:1 +EAS38_1_153_136_402 16 chr1 3190885 255 35M * 0 0 ATGTAAGGAGCCCAGACTCTTGCCATCTGGAAGCA QUhWhhh[hTahhhhQhhUhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_267_293_629 16 chr1 3190891 255 35M * 0 0 GGAGCCCAGACTCTTGCCATCTGGAAGCAGGCTCA Zg]YhEhhhhfd`hZhJhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_60_948_719 16 chr1 3190944 255 35M * 0 0 TACCCAGAAAAACATTTGTTCTTTTGGATGCCATT BAHQQhFehhhRhUPKJVf\hh^bWh_hhhhhhhh NM:i:0 +EAS38_1_279_273_497 0 chr1 3190975 255 35M * 0 0 CATTAGTTCAGCCAGTGTCAACATGACTAGTGGTT hhhhhhhhhhhhhhhZYhhhhahhh`Uh`ELGVVg NM:i:0 +EAS38_1_35_405_941 16 chr1 3190979 255 35M * 0 0 AGTTCAGCCAGTGTCAACATGACTAGTGGTTTCCC E??>bfB^hhOIT_hhhhhhUWhhhhh^hhhhhhh NM:i:0 +EAS38_1_307_828_462 16 chr1 3190995 255 35M * 0 0 ACATGACTAGTGGTTTCCCAAGCACTTGCTTGGAA hRhhhhh^hhhhhhhhGfhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_118_418_323 16 chr1 3191023 255 35M * 0 0 CGTGGAAGCAAAGATAAAGAAAGTCTGCTTTCCAG IS@dWhh]NhhhHhbhhhhhhhhZhchhhhghhhh NM:i:2 +EAS38_1_144_10_603 0 chr1 3191023 255 35M * 0 0 CTTGGAAGCAAATATAAAGAAAGTCTGCTTTCCAG hhhhhhhhhhZhhhhhhdhWhhhhhhh^hhhDhKU NM:i:0 +EAS38_1_219_965_773 16 chr1 3191038 255 35M * 0 0 AAAGAAAGTCTGCTTTCCACGCTTCTCATCTATAG hhhIhhh[ehXQhhhahhhJhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_56_375_762 16 chr1 3191134 255 35M * 0 0 CATTATTAGAAATTCCAACCCTAGTTATGAAAGAT hh_VhKZhMhhhSXbhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_148_601_688 16 chr1 3191142 255 35M * 0 0 GAAATTCCAACCCTAGTTATGAAAGATTGAGGGGA hhhhhTdhhhhhhhhhhhhhhhhhhhhhhhhhh>h NM:i:1 +EAS38_1_236_489_757 0 chr1 3191149 255 35M * 0 0 CAACCCTAGTTATGAAAGATTGAGGGAAAGTGATA hhhhhhhhhhhhhhhhhhThhhbhhhSKhhXhTh_ NM:i:0 +EAS38_1_144_552_470 0 chr1 3191153 255 35M * 0 0 CCTAGTTATGAAAGATTGAGGGAAAGTGATAAAGA hhhhhhhhhhhhhhehhhh`h\IPThhhThGKUML NM:i:0 +EAS38_1_288_225_365 16 chr1 3191173 255 35M * 0 0 GGAAAGTGATAAAGAACAAAAGGGAGGGATATTAT hhhhhh\hh`hhhhhhMhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_33_904_669 0 chr1 3191192 255 35M * 0 0 AAGGGAGGGATATTATTCTCTCATTTTTAACAGCA hhhhhhhhhhhhhhhhhhhhhhghhhhhhhhYKJH NM:i:0 +EAS38_1_123_430_125 16 chr1 3191220 255 35M * 0 0 AACAGCATATTTGTCTTAGCTTTAAATCCAGAGTA hhDh`Ch`h[UTh[RhehhcThhhhhhhhhhhhhh NM:i:0 +EAS38_1_179_676_404 16 chr1 3191241 255 35M * 0 0 TTAAATCCAGAGTACTGTTTGGCTTCAAAGAAGAT QhhhhLZUhhhhfhhbhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_120_22_725 0 chr1 3191250 255 35M * 0 0 GAGTACTGTTTGGCTTCAAAGAAGATAGTCATCTC hhhhhhhhhhhhhhhhfhhhhahhhhdhhhZhNhX NM:i:0 +EAS38_1_223_373_449 0 chr1 3191268 255 35M * 0 0 AAGAAGATAGTCATCACTGGTTCTCTTACTGAGAA hhhhhhhhhhhhhhhDhhhhZhhhhhh^hh[NFCQ NM:i:1 +EAS38_1_112_183_986 0 chr1 3191269 255 35M * 0 0 AGAAGATAGTCATCTCTGGTTCTCTTACTGAGAAT hhhhhhhhhhhhhhhfhhhehhhfhhX\hhVhbKg NM:i:0 +EAS38_1_172_99_819 16 chr1 3191287 255 35M * 0 0 GTTCTCTTACTGAGAATAGNAAGTCTCTCCTTACT U\VhOhhhhhhhhhhhhhh;hhhhhhhhhhhhhhh NM:i:1 +EAS38_1_210_930_591 16 chr1 3191287 255 35M * 0 0 GTTCTCTTACTGAGAATAGAAAGTCTCTCCTTACT LWK^Khh^ShNhhhhhhhhhhhhXhhhhhhhhhhh NM:i:0 +EAS38_1_100_778_539 16 chr1 3191290 255 35M * 0 0 CTCTTACTGAGAATAGAAAGTCTCTCCTTACTGAG hhfhhhThhhhhhhhhhhhh^hhhhhhhhhhhhhh NM:i:0 +EAS38_1_25_830_623 16 chr1 3191298 255 35M * 0 0 GAGAATAGAAAGTCTCTCCTTACTGAGAATAGGAA YhRhhLhhhhhh`h\hhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_304_473_442 0 chr1 3191304 255 35M * 0 0 AGAAAGTCTCTCCTTACTGAGAATAGGAAGCCATC `hhhThehhhhh\hhXYhgJ`ILQLDNBIAAM=HD NM:i:0 +EAS38_1_205_508_718 16 chr1 3191307 255 35M * 0 0 AAGTCTCTCCTTACTGAGAATAGGAAGCCATCTTC hhRBOThbhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_293_376_615 16 chr1 3191307 255 35M * 0 0 AAGTCTCTCCTTACTGAGAATAGGAAGCCATCTTC hhh@hFhOhhghhh[hh`hhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_182_907_727 16 chr1 3191326 255 35M * 0 0 ATAGGAAGCNATCTTCATACCTGTCCCTCTGCATT hM^FJg`Mh;hhhhfhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_222_741_776 0 chr1 3191358 255 35M * 0 0 ATTTATTCTTGAGGTTACTGAGCCATCTGGCTACA hhhhhhhhhhhhhhChhYhTehDVghIhh][ZF?K NM:i:0 +EAS38_1_88_323_543 16 chr1 3191374 255 35M * 0 0 ACTGAGCCATCTGGCTACAGAGAAGAAAAGCAAGA X\Ghhe^JhNaXhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_66_197_743 16 chr1 3191383 255 35M * 0 0 TCTGGCTACAGAGAAGAAAAGCAAGAGTTGTTTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_173_864_740 16 chr1 3191391 255 35M * 0 0 CAGAGAAGAAAAGCAAGAGTTGTTTTTTTATTTTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_124_858_171 16 chr1 3191398 255 35M * 0 0 GAAAAGCAAGAGTTGTTTTTTTATTTTTATTTTAT chhhhU\hhhhcOchhObh]hhhhhhhhhhhhhhh NM:i:0 +EAS38_1_126_138_418 16 chr1 3191410 255 35M * 0 0 TTGTGTTTTTATTTTTATTTTATTTTTATTTTTTT U`hhBfhZZhhh`Yhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_221_397_462 0 chr1 3191429 255 35M * 0 0 TTTTTTTTATTTTTTTAAGTAGAAGCAAGATTCTC hhhhhhhhZhhhhhhhhVFhbKMSWhRG]?hhQh[ NM:i:1 +EAS38_1_216_901_971 0 chr1 3191444 255 35M * 0 0 TAAGTAGAAGCAAGATTCTCATTAAGGCTAACTAT hhhhhhhhhhhhhhhhhahZZhbhabfQ[MKFWGU NM:i:0 +EAS38_1_282_128_662 0 chr1 3191445 255 35M * 0 0 AAGTAGAAGCAAGATTCTCATTAAGGCTAACTATG hhhhhhhchhhhh]hhhhhVhhZhhhZhZ@MbMaL NM:i:0 +EAS38_1_77_686_871 0 chr1 3191446 255 35M * 0 0 AGTAGAAGCAAGATTCTCATTAAGGCTAATTATGT hhhhhhhhhhhhhhhdhhhhhhhhh^hh]@hhh`B NM:i:2 +EAS38_1_95_356_853 0 chr1 3191446 255 35M * 0 0 AGTAGAAGCAAGATTCTCATTAAGGCTAACTATGC hhhhhhhhhhhhhhhhhhhhhhPhhfh\HJGUhLN NM:i:0 +EAS38_1_315_80_525 0 chr1 3191449 255 35M * 0 0 AGATGCAAGATTCTCATTAAGGCTAACTATGCTAT hhhhhhhhhhhhhhhehhhR\Khh]]gh[hZ_hJh NM:i:1 +EAS38_1_211_797_532 0 chr1 3191471 255 35M * 0 0 CTAACTATGCTATTCTCCACTGCGCCCCATTGATC hhhhhhhhhhhhhhhhhhhhhfcIhLh[HhgUUhK NM:i:0 +EAS38_1_326_311_799 0 chr1 3191471 255 35M * 0 0 CTAACTATGCTATTCTCCACTGCGCCCCATTGATC hhhhhhhhhhhhhhhhhhhhhhhhghhhhhhhVhG NM:i:0 +EAS38_1_107_806_891 16 chr1 3191478 255 35M * 0 0 TCCTATTCTCCACTGCGCCCCATTGATCAGACAAT LBfP^MWhAhh_hh^hZhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_121_349_512 0 chr1 3191489 255 35M * 0 0 ACTGCGCCCCATTGATCAGACAATGGCTTTAAGTG hhhhhhhhhhhhhhhhhhhhhBhhhhhhhhOOJeT NM:i:0 +EAS38_1_219_430_836 16 chr1 3191498 255 35M * 0 0 CATTGATCAGACAATGGCTTTAAGTGGGGCCTAAA c_WRRdUhhN[hhhdaWhOhhhghhhhhhhhhhhh NM:i:0 +EAS38_1_98_807_431 16 chr1 3191517 255 35M * 0 0 TTAAGTGGGGCCTAAATGAACTGTTGGACATCAGG PQg^SGhO[eOKhhhh`hhhYahhXhhhhhhhhhh NM:i:0 +EAS38_1_155_241_829 16 chr1 3191535 255 35M * 0 0 AACTGTTGGACATCAGGTTCATGAAAACGGTTTTG ]QbLHKRRThhhWhhh[hdghhhhhhhhhhhhhhh NM:i:0 +EAS38_1_223_732_501 0 chr1 3191535 255 35M * 0 0 AACTGTTGGACATCAGGTTCATGAAAACGGTTTTG hhhhhhhhhYhahh\EQghh\hPMJd_hSX[XhgE NM:i:0 +EAS38_1_320_444_109 16 chr1 3191535 255 35M * 0 0 AACTGTTGGACATCAGGTTCATGAAAACGGTTTTG hbHUhhGhhhRhhhhhWZhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_103_761_542 0 chr1 3191537 255 35M * 0 0 CTGTTGGACATCAGGTTCATGAAAACGGTTTTGTG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_245_218_950 0 chr1 3191539 255 35M * 0 0 GTTGGACATCAGGTTCATGAAAACGGTTTTGTGCA hhhhhhhhhchhhhhhhhhhhhhKhhhhhh_\R>f NM:i:1 +EAS38_1_54_654_789 0 chr1 3191548 255 35M * 0 0 CAGGTTCATGAAAACGGTTTTGTGAAGGTAATATA hhhhhhhhhhhhhhhhhhhhhhhhhhhhLhChhh^ NM:i:0 +EAS38_1_242_532_556 0 chr1 3191553 255 35M * 0 0 TCATGAAAACGGTTTTGTGAAGGTAATATATCAGT hhhhhh]hhhhhhhhhZhTfchhO[LhUhXTCJJP NM:i:0 +EAS38_1_37_578_493 16 chr1 3191563 255 35M * 0 0 GGTTTGGTGAAGGTAATATATCAGTAATATGGTTG THOCeDUEhhZQgchhhhhhJhhhhhhhhhhhhhh NM:i:1 +EAS38_1_151_713_632 0 chr1 3191572 255 35M * 0 0 AAGGTAATATATCAGTAATATGGTTGACATAAATA hhhhhhhhhhhhhhhhhhhhhhhhhhh`hhhSThh NM:i:0 +EAS38_1_152_680_718 0 chr1 3191572 255 35M * 0 0 AAGGTAATATATCAGTAATATGGTTGACATAAATA hhhhhhhhhhhhhhhhhhhhhhhhh^g\hhbhhh^ NM:i:0 +EAS38_1_152_24_706 0 chr1 3191573 255 35M * 0 0 AGGTAATATATCAGTAATATGGTTGACATAAATAA hhhhhhhhhhhhhhhhhhhhhhhhhOehhhWhhhW NM:i:0 +EAS38_1_330_686_422 16 chr1 3191575 255 35M * 0 0 GTAATATATCAGTAATATGGTTGACATAAATAAGC GLhhdhbhGJhh_hhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_275_44_659 0 chr1 3191579 255 35M * 0 0 TATATCAGTAATATGGTTGACATAAATAAGCTGGG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhTcg NM:i:0 +EAS38_1_324_589_894 0 chr1 3191579 255 35M * 0 0 TATATCAGTAATATGGTTGACATAAATAAGATGGG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhXhhhh NM:i:1 +EAS38_1_121_763_313 0 chr1 3191589 255 35M * 0 0 ATATGGTTGACATAAATAAGCTGGGAAATAGTTCT hhhhhhhhhhhhhhhhhhhhhhchhWFhhTChhfh NM:i:0 +EAS38_1_130_668_987 16 chr1 3191610 255 35M * 0 0 TGGGAAATAGTTCTTTTAGGAAGTAGAAGATTTTT UT>Khbhbhhh[hhhhZhhfhhhhhhhhhhhhhBh NM:i:0 +EAS38_1_80_262_758 16 chr1 3191611 255 35M * 0 0 GGGAAATAGTTCTTTTAGGAAGTAGAAGATTTTTC PYdhhhMhh\HhhVhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_272_104_967 0 chr1 3191614 255 35M * 0 0 AAATAGTTCTTTTAGAAAGTAGAAGATTTTTCTCT hhhhhhhhhhhhhhhGhhhhhhhehXhhhhhZhZh NM:i:1 +EAS38_1_142_144_587 16 chr1 3191617 255 35M * 0 0 TAGTTCTTTTAGGAAGTAGAAGATTTTTCTCTTTG bhhhHPhNhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_282_509_344 16 chr1 3191618 255 35M * 0 0 AGTTCTTTTAGGAAGTAGAAGATTTTTCTCTTTGT hh^YdVSKWhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_3_797_743 0 chr1 3191619 255 35M * 0 0 GTTCTTTTAGGAAGCAGAAGATTTTTCTCTTTTTG hhhhhhhhhhhhhhAhhhhhXhhhhhhhfhhhHhb NM:i:2 +EAS38_1_311_266_241 16 chr1 3191633 255 35M * 0 0 TAGAAGATTTTTCTCTTTGTGTCTGTGTCTTTCAT LhhhhhhXGFHH_HhhhThhhdhhhhhhhhhhhhh NM:i:0 +EAS38_1_282_320_153 16 chr1 3191635 255 35M * 0 0 GAAGATTTTTCTCTTTGTGTCTGTGTCTTTCATTT OQ\\PEA[JHNGRQJhhhhXNhhWhVhhUfhhhhh NM:i:0 +EAS38_1_74_839_687 16 chr1 3191635 255 35M * 0 0 GAAGATTTTTCTCTTTGTGTCTGTGTCTTTCATTT MhhWhS[hhGhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_119_931_54 16 chr1 3191636 255 35M * 0 0 AAGATTTTTCTCTTTGTGTCTGTGTCTTTCATTTG QJ?JRKXIZaOhYYdbhhhhbhhhfhhhhhhhhhh NM:i:0 +EAS38_1_171_559_793 16 chr1 3191638 255 35M * 0 0 GATTTTTCTCTTTGTGTCTGTGTCTTTCATTTGCC U_NhR[ZhhhRhWhhhhhh>hhhhhhhhhhhhhhh NM:i:0 +EAS38_1_9_831_797 0 chr1 3191643 255 35M * 0 0 TTCTCTTTGTGTCTGTGTCTTTCATTTGCCTTTGT hhhhhhhhhhhhhhhhhhGhhhGChhhH>Kd?hEA NM:i:2 +EAS38_1_112_463_853 0 chr1 3191663 255 35M * 0 0 TTCATTTGCCTATGAAAAGAATGTTAGTTGGCTGT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhah^h NM:i:0 +EAS38_1_200_507_523 16 chr1 3191673 255 35M * 0 0 TATGAAAAGAATGTTAGTTGGCTGTAACCATAAAA @hW^hhhhehhKgXh\hh^hhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_307_105_716 0 chr1 3191676 255 35M * 0 0 GAAAAGAATGTTAGTTGGCTGTAACCATAAAATTG hhhhhhhhhhhhhhhhhhhhhhUh[_Hh]aQdhhZ NM:i:0 +EAS38_1_81_670_875 16 chr1 3191698 255 35M * 0 0 AACCATAAAATTGGCAGTTGTATTTACAAATAATC hehhhhhhhhhhhZhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_285_30_406 0 chr1 3191712 255 35M * 0 0 CAGTTGTATTTACAAATAATCACATATATTATGCT h_hhhhh_hhh]hQQShILhhYhQhIhHhCIh@U_ NM:i:1 +EAS38_1_45_791_522 16 chr1 3191716 255 35M * 0 0 TGTATTTACAAATAATCACATATATGATGCTTACA hh`hhXhhhhhhhhhfhhhHhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_43_819_567 16 chr1 3191719 255 35M * 0 0 ATTTACAAATAATCACATATATGATGCTTACAGAA hhQhhChhhhhhhhhhhhh@hhhhhhhhhhhhhhh NM:i:0 +EAS38_1_26_772_717 0 chr1 3191761 255 35M * 0 0 CTCATTTCTAAATAATCACATATGCTAAAAGCTAG hhhhhhhhhhhhhhhhhhhhhZhhYhWfahSIhHS NM:i:0 +EAS38_1_130_865_419 0 chr1 3191766 255 35M * 0 0 TTCTAAATAATCACATATGCTAAAAGCTAGGTTTT hhhhhhhhhhhhhhhhhhhhh\`hhOhhELh_hhh NM:i:0 +EAS38_1_327_933_866 0 chr1 3191766 255 35M * 0 0 TTCTAAATAATCACATATGCTAAAAGCTAGGTTTT hhhhhhhhhhhhhhhhhhhhhhh]chYhPhLYhhh NM:i:0 +EAS38_1_126_547_811 16 chr1 3191773 255 35M * 0 0 TAATCACATATGCTAAAAGCTAGGTTTTTCTAATA hhhThhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_277_668_994 16 chr1 3191773 255 35M * 0 0 TAATCACATATGCTAAAAGCTAGGTTTTTCTAATA _hhJhhhhhhh]hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_181_734_387 16 chr1 3191780 255 35M * 0 0 ATATGCTAAAAGCTAGGTTTTTCTAATACACTTTT hNhNTARh`hhhIOhhhXeRMhLahhhhhhhhhhh NM:i:0 +EAS38_1_174_224_835 16 chr1 3191785 255 35M * 0 0 CTAAAAGCTAGGTTTTTCTAATACACTTTTACTTT hhhhhhhhhhdghhhhhhhhhhhhhhhhhhh>hhh NM:i:1 +EAS38_1_192_253_159 16 chr1 3191794 255 35M * 0 0 AGGTTTTTATAATACACTTTTATTTTCATGGAGGG hhc\PLNGAfhhhhhh[hZ[_hh[ahhhYhhhhhh NM:i:1 +EAS38_1_184_325_530 16 chr1 3191800 255 35M * 0 0 TTCTAATACACTTTTATTTTCATGGAGGGCTCTAG hGV[hhWhhhhhXh^hghhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_250_311_830 16 chr1 3191810 255 35M * 0 0 CTTTTATTTTCATGGAGGGCTCTAGAGGATTCCAC YLGJTUPJNNXgKQR_VKThhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_275_852_575 16 chr1 3191813 255 35M * 0 0 TTATTTTCATGGAGGGCTCTAGAGGATTCCACGTG JVeYM[E`hJSLV]SQVRChhhhhhhhhhhShhhh NM:i:0 +EAS38_1_77_390_526 0 chr1 3191818 255 35M * 0 0 TTCATGGAGGGCTCTAGAGGATTCCCCGTGGCATA hhhhhhhhhhhhhhhThNhhOhhOQA_^TEV=^EG NM:i:2 +EAS38_1_299_893_564 16 chr1 3191846 255 35M * 0 0 TGGAATAGAAACCACTGAAAAGAGACTCAACTCTT @aVhhKhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_294_440_933 16 chr1 3191865 255 35M * 0 0 TAGAGACTCAACTCTTTTTCCCCCCAGCAATATTA O^EV?MhDhhUh\hYKVTKhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_278_780_674 16 chr1 3191873 255 35M * 0 0 CAACTCTTTTTCCCCCCAGCAATATTATGTTGCTC hhVWchcZHXMhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_86_970_279 0 chr1 3191876 255 35M * 0 0 CTCTTTTTCCCCCCAGCAATATTATGTTGCTCTGT hhhhhhhhhhhhhhPhheHhfhhehOhhEOhUhAF NM:i:0 +EAS38_1_148_146_536 0 chr1 3191881 255 35M * 0 0 TCTCCCCCCAGCAATATTATGTTGCTCTGTGCTGC hDhhhhhhh]hhhdhhhhhhhhhEhhhh\hEhhHG NM:i:1 +EAS38_1_224_888_484 16 chr1 3191884 255 35M * 0 0 CACCCCAGCAATATTATGTTGCTCTGTGCTGCTCT P?KJEARLNW`TdVWhF^OThhMgQ\hhhhfhhhh NM:i:1 +EAS38_1_223_648_752 0 chr1 3191887 255 35M * 0 0 CCCAGCAATATTATGCTGCTCTGTGCTGCTCTATG h_hhhhhhhhhhhhh=hhhhYhhOVghhB\AhWhM NM:i:1 +EAS38_1_300_220_617 0 chr1 3191891 255 35M * 0 0 GCAATATTATGTTGCTCTGTGCTGCTCTATGCATA hhdhhhhhhhhhhhhhhhhhh\hhhhZhhhhPKhL NM:i:0 +EAS38_1_63_467_696 16 chr1 3191897 255 35M * 0 0 TTATGTTGCTCTGTGCTGCTCTATGCATATGGCAT FHh^h]Fhe?hfhhchhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_24_141_869 0 chr1 3191905 255 35M * 0 0 CTCTGTGCTGCTCTATGCATATGGCATGTTGTTGG hhhhhhh^hhUhUhhhhYhhfhh_BPcfh`RXOLS NM:i:0 +EAS38_1_184_494_683 16 chr1 3191911 255 35M * 0 0 GCTGCTCTATGCATATGGCATGTTGTTGGTACCTG =Qab\ahVhchahhh]hhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_263_460_363 16 chr1 3191919 255 35M * 0 0 ATGCATATGGCATGTTGTTGGTACCTGTACCATTC h?UIhJhWhhOhghhKhDhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_80_670_426 16 chr1 3191919 255 35M * 0 0 ATGCATATGGCATGTTGTTGGTACCTGTACCATTC cPgPhNh\hhhh[hhhhUahhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_118_725_870 0 chr1 3191927 255 35M * 0 0 GGCATGTTGTTGGTACCTGTACCATTCTCTTCCAT hhhhhhhhhhhhhhhcghhhhRSQhhUhHhhGKLh NM:i:0 +EAS38_1_88_806_693 16 chr1 3191952 255 35M * 0 0 TCTCTTCCATTGAGAATTCTAAGCCATTATGTGGA fhhhhahhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_160_191_877 16 chr1 3191955 255 35M * 0 0 CTTCCATTGAGAATTCTAAGCCATTATGTGGAGGA hhXhhh\hhhhhhehhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_300_179_943 16 chr1 3191975 255 35M * 0 0 CCATTATGTGGAGGAGCTGTTCAGCTCTCTCTAAC h^IRPXZNMBIMZL[Ehh[hdhhQhchhhhhhhhh NM:i:0 +EAS38_1_208_195_556 0 chr1 3191986 255 35M * 0 0 AGGAGCTGTTCAGCTCTCTCTAACCTATTTAGATT hhhhhhhhhhhdhhhhhhhhhPhehhMhhhTH?bh NM:i:0 +EAS38_1_16_568_852 0 chr1 3191993 255 35M * 0 0 GTTCAGCTCTCTCTAACCTATTTAGATTTTATCTT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhLhMhh NM:i:0 +EAS38_1_290_6_992 16 chr1 3192030 255 35M * 0 0 ACTTTGTGATAGAATCTCTCTATAGAATGTTCTCT F_UhhHhLhbeKhhhh^hhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_300_29_772 16 chr1 3192030 255 35M * 0 0 TCTTTGTGATAGAATCTCTCTATAGAATGTTCTCT Ahh`Vhh[hhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_109_466_314 0 chr1 3192031 255 35M * 0 0 CTTTGTGATAGAATCTCTCTATAGAATGTTCTCTC hhhhhhhhhhhfhhhhhhhhKhhGLXhRhhPhLhS NM:i:0 +EAS38_1_112_657_773 0 chr1 3192037 255 35M * 0 0 GATAGAATCTCTCTATAGAATGTTCTCTCCACCCA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh]BG NM:i:2 +EAS38_1_137_971_213 16 chr1 3192048 255 35M * 0 0 TATATAGAATGTTCTCTCAACCACCTCCTGCTAGT C@BHTcZhaFFRSB\hVT@Oehhhhhhhhhhhhhh NM:i:2 +EAS38_1_185_636_515 16 chr1 3192048 255 35M * 0 0 TCTATAGAATGATCTCTCAACCACCTCCTGCTAGT F@J\Jd]Q\ABBAcA[Mhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_1_44_970_650 0 chr1 3192058 255 35M * 0 0 GTTCTCTCCACCACCCCCTGCTAGTCATACCAAAC hhhhhhhhhhhhhhThMhhhac\h[e_WRGfUIMH NM:i:1 +EAS38_1_92_965_745 0 chr1 3192064 255 35M * 0 0 TCCACCACCTCCTGCTAGTCATACCAAACCCACCC hhhhhhhhhhhhhhhhhhhhhhhJh_hhPIV_X?G NM:i:0 +EAS38_1_261_922_44 0 chr1 3192119 255 35M * 0 0 ACTTCAGTTTTTCTTTATAAAACTTAATCAAAACC hhhh_hhfhhhhhhEh_hTTY]hh@aJhOFMTOLM NM:i:2 +EAS38_1_123_430_987 16 chr1 3192133 255 35M * 0 0 GTATAAAACTGAATCAAAACCGATGTTTATTTTTA GZhdhhh]hhdhhdhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_234_381_448 0 chr1 3192142 255 35M * 0 0 TGAATCAAAACCGATGTTTATTTTTATGATAAAAA hhBhhh]hhhhhhhhhhhhFhhhhhThB_hQ]O@Y NM:i:0 +EAS38_1_46_449_600 0 chr1 3192148 255 35M * 0 0 AAAACCGATGTTTATNTTTATGATAAAAAGGATAT hhhhhhhahhhhhhh;hhhhhhfhThNh^OGWh]h NM:i:1 +EAS38_1_239_737_373 0 chr1 3192153 255 35M * 0 0 CGATGTTTATTTTTATTATAAAAAGGATATACTTT hhhhhhhhhhhhhhdhK[hhhRW\JMPhbhNhhhh NM:i:1 +EAS38_1_24_496_314 0 chr1 3192169 255 35M * 0 0 GATAAAAAGGATATACTTTTGTATTTTGTTGTAGA hhhhhhhhhhhhhhhhhhhhDhLhhhhHM[O]EA? NM:i:2 +EAS38_1_150_229_75 16 chr1 3192202 255 35M * 0 0 GAAAAAATATTGGTTTAAGAAGGAGATAAAAAGTC hhhhhhhJhA]hhSPARhhhhhhhhhbhhhhhhhh NM:i:1 +EAS38_1_170_110_874 16 chr1 3192248 255 35M * 0 0 AATTACCTTTTACCCACTTACTGTTCTTACATGAC hhhhXhh]hQhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_142_857_213 0 chr1 3192280 255 35M * 0 0 GACCTGACTATCCTAACAAACTCTATTCTAGCACT hhhhhhhhhhhhhhh\hQh_hhhhYhhhhRB]Wbh NM:i:0 +EAS38_1_7_223_584 0 chr1 3192314 255 35M * 0 0 TGTAGATATTTTTGAGGAGTCACATACTTTTCTAT hhhhhhhhhhhhhghhK^YhhhhJhhDhhhhhhMh NM:i:1 +EAS38_1_95_195_644 16 chr1 3192330 255 35M * 0 0 GAGTCACATAATTTTCTATGCTACAGTCATGCTTC hhhbPhZhhhhOhh`hhhYhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_219_903_777 0 chr1 3192346 255 35M * 0 0 TATGCTACAGTCATGATTCAGAAAGTCTAATGTCG hhhhhhhhhhhhhhhBhhhhhhhhhghh\hhhhJ[ NM:i:1 +EAS38_1_108_439_554 16 chr1 3192349 255 35M * 0 0 GCTACAGTCATGCTTCAGAAAGTCTAATGTCGTGA aThhhhhehhdhhXhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_239_516_540 0 chr1 3192442 255 35M * 0 0 TAATTTTAGAGAATCAGAGGAGATTATATTGTGTG hhhhhhhhhhhhhhhhhhhhNhLhhThhhheOfhW NM:i:1 +EAS38_1_196_124_875 16 chr1 3192460 255 35M * 0 0 GGAGATTATATTGGGTGTCAATACTGTAAGTATTC ?N[Mhh_hWhXh[LVhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_222_834_314 16 chr1 3192460 255 35M * 0 0 GGAGATTAGATTGGGTGTCGATACTGTAAGTATTC WDXGRJOR?hCMfKhR]OAIhPXZRh^hhhhhhSh NM:i:2 +EAS38_1_230_638_588 0 chr1 3192551 255 35M * 0 0 TATTTGAAGAGTATGGAATTTATTTTGTAAATGAA hhhhhhhhhhhhhhhhhhhhhWhhhhhh\`hhhG` NM:i:0 +EAS38_1_264_255_706 0 chr1 3192603 255 35M * 0 0 AGTACTGAATGGAGCCACATCATTCACATATTTCC hhhhhhhhhhhhhhhhhhhhhghhbhhdhfhhhdP NM:i:0 +EAS38_1_105_766_448 16 chr1 3192724 255 35M * 0 0 TTAGTTTAGTCATTTAGGCAAGGAAATAGACATTG Ghhhhhhhhhhhghhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_281_8_752 0 chr1 3192785 255 35M * 0 0 GCTCAGGTTGTTTTTCCTACCATCTCTCCACATTT hhhEhhhhhhhhhhhN\hh@MOhHU>WDGHW?WTd NM:i:1 +EAS38_1_273_517_672 16 chr1 3192933 255 35M * 0 0 ATAATATGGAGATGAATCAGCTCAAGAGTTCTGAG hhhhghCfdhhhhhhhhhhhhahhhhhhhhhhhhh NM:i:0 +EAS38_1_194_915_453 16 chr1 3192959 255 35M * 0 0 AGTCCTGAGCAGAAACACCATTCCACATTCTTCTG hbIGI_hhhOhhhhhfV\hhhdhhhhhhQhhhhhh NM:i:1 +EAS38_1_270_767_516 16 chr1 3193008 255 35M * 0 0 TGTTAGAAATGGTATAAAATCCCAGTTAAACCATT ThUchhhhhfhJhhhhhhhDOhchhhhhhhhhhhh NM:i:1 +EAS38_1_311_398_506 16 chr1 3193008 255 35M * 0 0 TGTTAGAAATGGTATAAAAACCCAGTTAAACCATT OWRbhhhhhUhZhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_77_151_681 16 chr1 3193008 255 35M * 0 0 TGTTAGAAATGGTATAAAAACCCAGTTAAACCATT WCP`hhhhhRhO\hhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_210_41_603 16 chr1 3193471 255 35M * 0 0 CACATTCCTTATAACACACTGTGAGGTAGGTGAAG ^bZV`R]hh_hOhhh`hhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_124_634_862 16 chr1 3193821 255 35M * 0 0 TTTCTGGGTATGATTGCTGTTAGCCTTTCTGTTTT h^HhhhDBhhhhhhhdhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_101_162_624 0 chr1 3194186 255 35M * 0 0 TTGCACTGTGTTTAGAAATCCCTCAAAAGGTTTGC hhhhhhhhhhhhhhhhhhhhhhhhW[hPfeUhhVY NM:i:0 +EAS38_1_235_609_726 0 chr1 3194200 255 35M * 0 0 GACATCCCTCAAAAGGTTTGCATAGCCAAATGCCT QJH]I]TaV[_X^\QIERLJHEG?H>JFFD@BCC? NM:i:1 +EAS38_1_162_13_894 16 chr1 3194295 255 35M * 0 0 GGGAATTGTTCACACAATTTGTGTGTTTTTCTGTC ?HCMeVTN?Sh[hRhhhhZhbhhhhhhhhhhhhhh NM:i:2 +EAS38_1_201_123_722 0 chr1 3194814 255 35M * 0 0 AACCATTATGTAAAGTATACTTTATAAATGTTTAA hhhhhhhhhhhhhhhhhhhhhhhhh]hhhhhhh\M NM:i:0 +EAS38_1_251_938_580 16 chr1 3195076 255 35M * 0 0 TATTTATCTTTGTACAACAAAGAGACTCTTAGCAG dYGWNFSQhWVPhhGhh`hhhehhhhhhhhhhhhh NM:i:1 +EAS38_1_8_777_292 16 chr1 3195076 255 35M * 0 0 TATTTATCTTTGTACAAAAAAGAGACTCTTAGCAG JQFAH@BLJGRNEhQhhDhhhfhhhh]]hhhhhhh NM:i:2 +EAS38_1_212_466_584 0 chr1 3195258 255 35M * 0 0 GCTATCCCAAAACCATATGTGCTGCTTGTATGAAC hhhhhhhhhghhhhfhhhh]hZhhhhhbhfhOD>M NM:i:1 +EAS38_1_137_805_954 0 chr1 3195451 255 35M * 0 0 GGAAAAGTCAGAACTTTGGGGTGATCAAACGTCTA hhhhhhhhhhhhhhhhhhhhhghhhCPhPIhMJYD NM:i:1 +EAS38_1_63_741_75 0 chr1 3195451 255 35M * 0 0 GGAAAAGTCAGAACTTTTGTGTGATCAACCGTCTA hhhhhhhhhhhVhhhhhFEJFhOHhSVRG@N_D_Q NM:i:2 +EAS38_1_146_999_561 16 chr1 3197082 255 35M * 0 0 GGAATCCATTGGCTGATCTTTTAAGAAGTAGTTCT SahhhRhhhXh\hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_295_1_556 16 chr1 3197082 255 35M * 0 0 GGAATCCATTGGCTGATCTTTTAAGAAGTAGTTCT bdhhMFhhgehhhhhhbIhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_133_696_323 16 chr1 3197239 255 35M * 0 0 CCTGCAATGAACCAACTGCTCCTTTCCCATTAATT ??FCJ??@DSCECKJ]JbhLXbXh\hUhhh^hhhf NM:i:2 +EAS38_1_184_992_275 0 chr1 3197347 255 35M * 0 0 GATTAATTAACTGCAATTCATCTCCAGTAAAATTT hhhhhhhhhhhhhhhShhhhhhhhh^`WILU_hhh NM:i:0 +EAS38_1_261_311_801 16 chr1 3197969 255 35M * 0 0 ATAAAAATTGAACAAAAAAAAGAAATGGGTTTCTT hchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_199_494_378 16 chr1 3198110 255 35M * 0 0 GCCATGCCAGAATGCTAGGACAATAGTTAAATTAA ?Dhh\hKPhhhhUhZhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_186_296_431 16 chr1 3199201 255 35M * 0 0 GTTAGCACTTTGTCACATATTCCACTGCTTTTAAA S>MhSKKDFJVhGHhPh]hdWhhhhhhhhhhhhhh NM:i:0 +EAS38_1_32_939_527 0 chr1 3199927 255 35M * 0 0 TTTCCCTAGTTTAGCTGTGATGCCTTTGACAAGCT hhhhhhhhhhhhhhhhhhhhhhghhhhVFYNVGYh NM:i:0 +EAS38_1_174_562_297 0 chr1 3200023 255 35M * 0 0 AAGGGAGATAGATCCCAGAGGTAAGGATCTTCAAG hbhRL^hCXHWNdNTMIH?IJG?DDE?C>KFH@B? NM:i:2 +EAS38_1_80_292_639 0 chr1 3200090 255 35M * 0 0 GATACTCTTAACTGATATGGGAATCAAGCCACACG hhhhhhhhhhhhhhhhhhhYcEhhh^d^TOhh]K? NM:i:1 +EAS38_1_146_971_305 16 chr1 3200157 255 35M * 0 0 ACGTTCAGCTTAGATTGTTTCTGAGTTTGTGTCCT RMOUAJ[YRHYh\hZhhhW[hhhhhhhhhhhhhhh NM:i:0 +EAS38_1_103_633_813 16 chr1 3200318 255 35M * 0 0 TATAATATAATAAGGATCTAACATGTTGCTTTCTC YghhhNhUhh^hhThh]hhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_268_250_819 16 chr1 3200318 255 35M * 0 0 TATAATATAATAAGGATCTAACATGTTGCTTTCTC hhhhhVhhhhhhhgVhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_195_376_807 16 chr1 3200796 255 35M * 0 0 TCAGGGAGGGGGACTAAAGTGAGGTCACCTATTCC Ihe[Ihh]XahhhhhhhhhhhhFhhhhhhhhhhhh NM:i:1 +EAS38_1_92_137_414 0 chr1 3200902 0 35M * 0 0 TTTTTTTTTTTTTTTTTTTTTTTTCTCTATTTTCC hhhhhhhhhhhhhhhhhhhhhhdhCA@hJ@IK@AE NM:i:2 +EAS38_1_142_636_259 0 chr1 3200903 0 35M * 0 0 TTTTTTTTTTTTTTTTTTTTTTTTCCTATTTTCTA hhhhhhhhhhhhhhhhhhhhhhM?EM@>FLICF@@ NM:i:2 +EAS38_1_72_206_749 0 chr1 3200905 0 35M * 0 0 TTTTTTTTTTTTTTTTTTTTTTGATACTTTCCAAA hhhhhhhhhhhhhhhhhhhhhhBAN@UOE@YEE=@ NM:i:2 +EAS38_1_111_883_143 16 chr1 3201070 255 35M * 0 0 AAAGACAGTTGGAACTATTTTTAAAAGGCGCTTTA hhhhhQhhH`hchhfhhh\ghhhhhhhhhhhhhhh NM:i:0 +EAS38_1_255_841_137 0 chr1 3201133 255 35M * 0 0 CAGGCATCTCATCCAAGCTTTATATATAAATAGTC hhhhh\hhhhdhahDPDhhhhKhSh`LFPEePCYI NM:i:1 +EAS38_1_25_534_590 0 chr1 3201133 255 35M * 0 0 CAGGCATCTCATCCAAGCTTTATATAGAAATAGTC hhhhhUhhhhhh`hVYhYhchMgO^LWKGJHFDNE NM:i:0 +EAS38_1_11_826_739 0 chr1 3201151 255 35M * 0 0 CTAATATAGAAATAGTCGTGGCTAATGGCAAAGAT hhBhhhhhhhhhhhhhhhLhhR]`]TY^@DNPQ@D NM:i:2 +EAS38_1_200_667_750 0 chr1 3201166 255 35M * 0 0 TCGTGGCTAATGGCAAAGATATGTGATGAATGCAA hhhhhhhhhhhhhLRhIhbQ]fZYULURBNRG?EP NM:i:0 +EAS38_1_148_510_997 0 chr1 3201180 255 35M * 0 0 AAAGATATGTGATGAATGCAAGGGAGCATATATTT hhhhhhhhhhhehhhhhhZhMhhZD`FOXSV_SPZ NM:i:0 +EAS38_1_221_65_299 16 chr1 3201185 255 35M * 0 0 TATGTGATGAATGAAAGGGAGAATATATTTAGTCT BhG[Egh]hhhLhAhhhhhhhPhbhUhTWMhhSVh NM:i:2 +EAS38_1_149_164_972 0 chr1 3201186 255 35M * 0 0 ATGTGATGAATGCAAGGGAGGATATATTTAGTGTA hhhhhhhhhhhhNhhhhhdhCWh_MhhWOVhVBhU NM:i:2 +EAS38_1_269_935_919 16 chr1 3201203 255 35M * 0 0 AAACATATATTTAGTCTAGAAAGTAGTTCATTAGA FWQhh[hbhhbhhQXhhhhhhhhhhhhhhhhhhhh NM:i:2 +EAS38_1_289_238_636 0 chr1 3201226 255 35M * 0 0 TAGTTCATTAGAAAAAATTCACAGGATTCTTGTCT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_125_517_695 16 chr1 3201271 255 35M * 0 0 TCAGAATTTGTTTCCACTCAGTAGCATCCAATGCA hJhHhhhWPehh\hhhhhchhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_22_489_754 16 chr1 3201281 255 35M * 0 0 TTTCCACTCGGTAGCATCCAATGCATTTGAAAGTG VNChUNhM\fDhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_122_450_662 16 chr1 3201346 255 35M * 0 0 TACACGTTTTCCTTGACTTAAGCCACGTGTTCAAT \PhJh`h[hKhhhhh`hhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_157_676_368 16 chr1 3201388 255 35M * 0 0 GAAGTAACATAAACTATTCAATTAGGCCACTTACA ghhYehhhhThhhhhh[Yhhh]hhhhhhhhhhhhh NM:i:0 +EAS38_1_4_358_468 16 chr1 3201390 255 35M * 0 0 AGTAAAAGAAACTATTCAATTAGGCCACTTACAAG hNDhhAhBhhhhWhMKdhhKbhhhhhhhhhhhhhh NM:i:2 +EAS38_1_15_825_658 16 chr1 3201447 255 35M * 0 0 AGTTCAGTCAAATCATGGAGCAAGGAATTCCATGT ]BZOJhZ`hhhhhhhhhhhhhhh]hhhhhhhhhhh NM:i:0 +EAS38_1_222_809_300 0 chr1 3201569 255 35M * 0 0 CAAAAAGTCATGGAAGTTTAAATTATCCCATGCAT hhhhh]hhhhhhS\c>hhhYhPhhhhhhhUhPhWh NM:i:1 +EAS38_1_116_429_381 16 chr1 3201665 255 35M * 0 0 TGTGTGTTTATTGAGAGTATGTGAGAAGATACCTG PhhhLhhchhh`hhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_156_372_572 16 chr1 3201665 255 35M * 0 0 TGTGTGTTTATTGAGAGTATGTGAGAAGATACCTG hhhhhhhEhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_79_182_652 16 chr1 3201849 255 35M * 0 0 TACAAAAAGCTATCATATAACAATCCATCTATCAT IAYhhhhhbhXhhhhhhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_186_626_713 16 chr1 3202147 255 35M * 0 0 CATTTATCAATCAATCTAATCTAACTTATCTATCT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_16_258_505 16 chr1 3203603 255 35M * 0 0 TTCCAGCTGGGAGGGTGAGTCTTCAGAGTTCATCA ?AIDSAPEhhhhhhhhhhhhhhfhhhhhhhhhhhh NM:i:1 +EAS38_1_197_118_218 16 chr1 3204368 255 35M * 0 0 GGTGAGGTAGGCTGATGGATTTGTAGACTGGATTC VPGgUMhAXhh@GchGdhhOXLhfhhfhhhhhhhh NM:i:1 +EAS38_1_141_404_857 0 chr1 3204755 255 35M * 0 0 TTTTTAATGGCATACACATTGCATCTGTATGCTCT hhhhhhhhhhhhhhhhhhhhhhhh_hdhhhhIhEh NM:i:0 +EAS38_1_125_490_276 16 chr1 3204799 255 35M * 0 0 AATTGTGACCCAAAGTCTCTAGTAGACACATCATT h\]@VFQ@QPAhhhhGhhI_hhhhhhhhhhhhhhh NM:i:1 +EAS38_1_171_771_691 16 chr1 3205563 255 35M * 0 0 TATGGGTATTTTGCCTGCATATATGTCTATGCACC ]hOhKfhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_284_911_331 0 chr1 3210849 255 35M * 0 0 CTCTGTATTCTCTTCTTCTATTCACATCTCTACAA hhhhhhhhhhhhhhhhhhhbhhhhhbhhhhhFhhG NM:i:0 +EAS38_1_101_808_273 0 chr1 3212214 255 35M * 0 0 AGATGGTTGGTTGTAGTTTGACCCTTGAAGTTTAT hhhhhhhhhhhhhh^XhhhhJ]hhhhHLHR\hhKh NM:i:0 +EAS38_1_161_452_506 16 chr1 3212258 255 35M * 0 0 CCGGAGTTCCCGGTGTGTTGCTACTGGCATGGTGG HJ>@_ZEEc]R[hWhfhhThhhhh]hhhhhhhhhh NM:i:2 +EAS38_1_246_740_824 0 chr1 3212368 255 35M * 0 0 TGTGTTGTTCTCTTCCACCAGAATGAACTATTGTG hhhhhhhhhhhhhh]hh[OhhhhhhOZZhMh_`Lh NM:i:0 +EAS38_1_328_863_236 0 chr1 3212368 255 35M * 0 0 TGTGTTGTTCTCTTCCACCAGAATGAACTATTGTG hhhhhhhhhhhfhhhh[hhRIhahh`ghh[hhhhW NM:i:0 +EAS38_1_71_507_507 0 chr1 3212368 255 35M * 0 0 TGTGTTGTTCTCTTCCACCAGAATGAACTATTGTT hhhhhhhhhhhhhhhhhhhg]LQhhhOhhShhHc? NM:i:1 +EAS38_1_156_360_657 0 chr1 3212393 255 35M * 0 0 AACTATTGTGAGTCTAGAGCTTCTCCAAATGCCTC hhhhhhhhhhhhhhhhhhhhhhXhVhChhhhhdbh NM:i:0 +EAS38_1_327_554_773 0 chr1 3212413 255 35M * 0 0 TTCTCCAAATGCCTCTTGTTACAAACATGCATATA hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_316_581_646 0 chr1 3213096 255 35M * 0 0 TTTTAATCTTATCTCCTCACTGCCTCCCTCTTAGG hhhhhhhhhhhhhhhhhgdhh_dRhhG^hfhYKJF NM:i:0 +EAS38_1_90_952_487 16 chr1 3214147 255 35M * 0 0 TCCCTGGATGAAGGAGGTTCAATTGGATTGAATTA DCQNQXOaeUhhUThcNhh`hhhhhhhhhhhhhhh NM:i:0 +EAS38_1_191_680_14 0 chr1 3225128 255 35M * 0 0 ATATTTTCCAACAGGTAAGAAGTATGCAAGCTCCA hhMhhhhhhchhhJJUIhEOPPDHhE[T@@IDD?A NM:i:1 +EAS38_1_138_982_940 0 chr1 3233636 0 35M * 0 0 TACCTCTCGCCATCTGTCAATCTCTGGAGTCAGTT hJhhhhh^hahYhhhhJBhhhLhJhhVaXJAB_BL NM:i:2 +EAS38_1_158_9_677 16 chr1 3242626 255 35M * 0 0 AAAATAAATAAGAGAGAGGAGCCTTACTGTGCTTG hhhhPhhh^hhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_253_923_934 16 chr1 3242672 255 35M * 0 0 AACATTGTCTTTCTGCCAGGTTTCTGTGGAGCATA CIOHFhHOhO@LhTLhhhhKhh[hhhhhchXhhhh NM:i:1 +EAS38_1_5_178_743 16 chr1 3242672 255 35M * 0 0 AACATTTTCTGTCTGCCAGGTTTCTGTGGAGCATA QEDJM@C?]OOKhKRh^fUOR^Nhchehhhhhhhh NM:i:1 +EAS38_1_198_267_632 0 chr1 3242722 255 35M * 0 0 CGACACACCCCTTCTGCATACTGGCCTGTCACTGA hhhhhhhhhhhhhhhhhhhhhhhhhQhJT?ISHLA NM:i:2 +EAS38_1_19_755_678 0 chr1 3242782 255 35M * 0 0 GAGAACAGCAACTCCTCCTATAGCTTCTAGAGACA hhhhhhhhhhVRhUZghFgEhYhLQROfI?OCIGE NM:i:0 +EAS38_1_243_907_786 0 chr1 3242782 255 35M * 0 0 GAGAACAGCAACTCCTCCTATAGCTTCTAGAGACC hhhhhVhhNhhhhUahhWhJWhZOKhO\MPTGN?> NM:i:1 +EAS38_1_278_440_897 0 chr1 3242782 255 35M * 0 0 GAGAACAGCAACTCCTCCTATAGCTTCTAGAGACA hhhhhhhhhhhhhehh_YhhhhhDhhDhNMEXANO NM:i:0 +EAS38_1_173_938_288 0 chr1 3242827 255 35M * 0 0 GCACTGGGCCTTTCTTCTGTGTCTGAGCTATTTCA hhhhhhhhhhhhhhhhhhhhhINhg?e\hVhhHhC NM:i:1 +EAS38_1_157_930_237 16 chr1 3242836 255 35M * 0 0 CTTTCTTCTGTGTCTGAGCTATTGCATTATATCTT PMUNNFZYHhFaVhUhhh^Shhhhhhhhhhhhhhh NM:i:0 +EAS38_1_266_172_602 16 chr1 3242889 255 35M * 0 0 TTCTAATCACTGATGCATTAATTAAAAGAATCATA XJLLBhchhNehhhhYhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_149_88_885 0 chr1 3243019 255 35M * 0 0 TTCTCTATATTCCTAGAGTTGTGTGGAAACTAATA hhhhhhhhhhhhhhhhhhhhhhhhhadLhObALgf NM:i:1 +EAS38_1_62_896_441 16 chr1 3243045 255 35M * 0 0 AAAATCATATGATACCATTTATGCTTGCCAGAACG hh_CZJh[hhhhhhhhhhXhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_12_294_576 16 chr1 3243367 255 35M * 0 0 AGAATAATAAATTATCCTATAAGCTGGGCTTGATG _hhhQhhahhhNNhDh[\hNhhhhWhhhhdhh>hh NM:i:1 +EAS38_1_2_533_514 16 chr1 3243367 255 35M * 0 0 AGAATAATAAATGATCCTATAAGCGGGGCTTGGTG hahhPh\ChZhhXhPhBNRZKhhh\hhhhhhhhhh NM:i:2 +EAS38_1_305_285_786 16 chr1 3243648 255 35M * 0 0 CAAAATATTGTTAGATTTGTTTGAGAGATTTGTTG hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_67_916_874 0 chr1 3243986 255 35M * 0 0 GATTATAATACCCTCGTTGAGATTTGTTTGTTATT hhhhhhhhhhhhhhhhhhh\hZhhhhhhhh^hfhh NM:i:0 +EAS38_1_123_564_954 16 chr1 3254091 255 35M * 0 0 GGAGTGACTGGCCTCCCCTCTTCTTTATAAAGCGT CDM?P<Mh@=FhhThhhhhhhdhhhhhhhhhhhhh NM:i:0 +EAS38_1_55_599_652 16 chr1 3254559 3 35M * 0 0 GTGTCAAGCTCTTGCAGAGCCTCTCAGGAGACAGC @AC=EhKFhAZMGW^Zhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_143_932_612 16 chr1 3256967 255 35M * 0 0 CCTAGAGACAAGGGCTGAAGCAGGCCAGTTATTTT JEEKSVIQNMSdN_h[dhhhhhehhhhhhhhhhhh NM:i:0 +EAS38_1_212_69_386 16 chr1 3256977 255 35M * 0 0 AGGGCTGAAGCAGGCCAGTTATTTTAGGAGAGCAG ROJUGJhhhhCUh]RJhhhhhh[hhhhhhhhhhhh NM:i:0 +EAS38_1_256_785_413 16 chr1 3256977 255 35M * 0 0 AGGGATGAAGCAGGCCAGTTATTTTAGGAGAGCAG U`MUAAebhaM[WbHHhhNhhfhh`hhhhhhhhhh NM:i:1 +EAS38_1_105_481_788 16 chr1 3268974 255 35M * 0 0 GCCCGAAAAAATCTGCTTTATATTGGCCACATACG DhGaahhhhhhhhhchhhhhhhhhhhhhhhhhhhh NM:i:1 +EAS38_1_16_282_422 16 chr1 3273908 255 35M * 0 0 CAAATGGGACACCATTGTCTACATTTATGGTAAGT AOBNCFVEVCWFM_PCdOFGhRhXLahhhhehhhh NM:i:2 +EAS38_1_283_187_798 0 chr1 3274213 255 35M * 0 0 TTAGTGAGCCTGAACCAACCAACCAATGAATATAC hhhhhhhhhhhhhhVhhhPhhhLhhXhhZOhhhhY NM:i:0 +EAS38_1_329_178_196 0 chr1 3274786 255 35M * 0 0 GGAAGGCAGATCAGTATAGGTTACCAATAAAATTG hhhhhhhdhhhhhhhchh_@ERhhhEhhCgUWhha NM:i:1 +EAS38_1_300_318_77 16 chr1 3276576 255 35M * 0 0 GAAGAAGAAATATAAGCAGTCCAAGCAGGTTTCAG hhhhMhhhhhhhZKhhghhhARhhhhhhhhhhhhh NM:i:2 +EAS38_1_118_479_935 0 chr1 3276843 255 35M * 0 0 TTTTATCCTCTAGCATGTCAGTCAGGTACAGGGAT hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh?O NM:i:0 +EAS38_1_41_971_61 0 chr1 3277038 255 35M * 0 0 TGATAAAACAAAAATGTAGACCTTTTAACAGACCC hhhhh\`Z^NhV[]hO[ODJJHW`TbIE?GDBDE> NM:i:2 +EAS38_1_183_306_813 16 chr1 3277183 255 35M * 0 0 CCCATATTATCTTGGAGGTAGGATGATAGTGGTTT ehhhhhdhVNhZhhhhh[hhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_288_251_841 16 chr1 3277184 255 35M * 0 0 CCATATTATCTTGGAGGTAGGATGATAGTGGTTTC U[h^hNhh]hehhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_40_672_870 16 chr1 3277184 255 35M * 0 0 CCATATTATCTTGGAGGTAGGATGATAGTGGTTTC Uhh]hMhhNhhgQ[h_Nhh_fhhhhhhhhhhhhhh NM:i:0 +EAS38_1_325_652_299 0 chr1 3278086 255 35M * 0 0 TTTCTGTTTTAAATTAATTACCTTTATTCCATGTC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhPhh NM:i:0 +EAS38_1_188_971_708 16 chr1 3278146 255 35M * 0 0 TCTTCCTCTTCGTTAGTTTGAATTTATTTCGTTCT P_QOhhWhhhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_295_186_302 16 chr1 3278229 255 35M * 0 0 CTTGTTGAGTGTTCTGCATGGAATAGAGGCATTTT CDG@ENd`[KQF@J?TEOBXYXaR\`V`hRhLhPh NM:i:1 +EAS38_1_314_975_553 16 chr1 3279235 255 35M * 0 0 ATTTGATAGGGACAGAATAAAAAGTGATAATTCTG hNJaVhahQDLhhhhhhRhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_220_655_831 16 chr1 3279355 255 35M * 0 0 AGAAAATACTTGCTTATTGCTGGAACACGTGACAT hShchXMRhK]Rhahhhhhhh^QhhhShhhhhhhh NM:i:0 +EAS38_1_267_333_743 16 chr1 3280494 255 35M * 0 0 CGTGATGCATCACCAGGGTATCCATGTATAGACTA FQNFhGVHhPfehVehKhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_165_158_507 16 chr1 3280679 255 35M * 0 0 GGGAACGTTATTTGGTGTCTATTGTGATTATTTCC hhbU`ZhhhhdX`hhYhhNhhhghhhhhhhhhchh NM:i:0 +EAS38_1_218_851_888 16 chr1 3280707 255 35M * 0 0 TATTTCCTAAATGCCCCTCNGTTTTTGTATGTTCT MPDILT_PI[`OLhc]hCh;hhh\VhKhhhdhhhh NM:i:1 +EAS38_1_144_853_896 16 chr1 3282690 255 35M * 0 0 GTATCACAAAGGCTCTTTTAACTCAAGAGTTTCTG MhhhhhhhhhXhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_232_504_623 0 chr1 3290489 255 35M * 0 0 TCCCTACATCTCTCCATGTTACTGTAAATGATAGT hhhhhhhhhhhhhhhhhhhhhhhh\Oee_PK`OV@ NM:i:1 +EAS38_1_238_304_582 0 chr1 3290527 255 35M * 0 0 TCATTCTTATTTAGCACTGAAATAATAACCGCCTA hhhhhhhhhhhhhMhhhhhhK]hRehha\DCGWhK NM:i:0 +EAS38_1_125_161_809 0 chr1 3290844 255 35M * 0 0 GCTACTGGGTGGTCTGCATAGCTTAGTGATACACT hh`bhhhhSYhhTE[QH@RFT>RJEVDCFLMCCBI NM:i:0 +EAS38_1_155_358_888 16 chr1 3290932 255 35M * 0 0 GTGGAATTGTAGGGGTGAAAAAAGACATTTCTGAG ghhRhhhhfhhhhhhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_157_904_203 0 chr1 3291089 255 35M * 0 0 ACAGCCCTGGATGATTTTTGAATGGGAATAATCCC hhhhhhhhhhLhh]hhhhhM^hhNI_@hhQ^hUMW NM:i:0 +EAS38_1_180_814_759 16 chr1 3291152 255 35M * 0 0 AACACCTAGTCATTGTTGGTGGCACTGTCTGTAAG NNWAgXVhhVh_RYhhSeYJh_hhhhhhhhhhhhh NM:i:0 +EAS38_1_170_391_724 16 chr1 3291373 255 35M * 0 0 AAGTAAACCCTTTCTCCTGTAAGTTTCCTTTGGTC _hhWhgQhhhUbchhhhhhhhhhhhhhhhhhhXhh NM:i:0 +EAS38_1_315_950_278 16 chr1 3291611 255 35M * 0 0 TCCATGCCCAGTTTCAGGTGGGAAAACAACTAAGT QAchLb^ChhhhhYhhhhhhhhhhhhhhhhhhhhh NM:i:0 +EAS38_1_330_167_763 16 chr1 3299360 255 35M * 0 0 AAAAATCTTTTTTCTTCTTCTTTCTTTCTTTCTAT hhhhhhhhLh__hhhhhhhhhhhhhhhhhhhhh=h NM:i:1 +EAS38_1_7_984_851 16 chr1 3299360 255 35M * 0 0 AAAAATCTTTTTTCTTCTTNTTTCTTTCTTTCTTT NLPMNN`LEdULNhVhhhh;Phhhhhhhhhhhhhh NM:i:1 +EAS38_1_133_814_850 0 chr1 3299443 1 35M * 0 0 TTTGAGACAGGGTTTCTTTATATAGCCATGGTTGG hhhhhhhhhhhhEhhChhhhhhhhhOTUhhf?SSG NM:i:2 +EAS38_1_303_411_338 16 chr1 3299602 255 35M * 0 0 GAGATGAATACTGGGTAGAAAATAAAAAAATTTAC ThYhFHhhI_JXh_XhhhhhhhYhhhhhhhhhhhh NM:i:0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out1.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,91 @@ +test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 log2(fold_change) test_stat p_value q_value significant +TCONS_00000001 XLOC_000001 Xkr4 chr1:3204754-3204833 q1 q2 OK 0 8.3103e+06 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TCONS_00000002 XLOC_000002 - chr1:3111449-3111490 q1 q2 OK 0 2.1403e+08 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TCONS_00000003 XLOC_000003 - chr1:3111545-3111576 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000009 XLOC_000011 - chr1:3192441-3192494 q1 q2 OK 0 5.68095e+07 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TCONS_00000010 XLOC_000012 - chr1:3192550-3192629 q1 q2 OK 0 4.15515e+06 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TCONS_00000011 XLOC_000014 - chr1:3192731-3192811 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000012 XLOC_000015 - chr1:3192940-3193042 q1 q2 OK 0 6.02976e+06 1.79769e+308 1.79769e+308 0.0512352 0.150149 no +TCONS_00000013 XLOC_000016 - chr1:3194185-3194226 q1 q2 OK 0 2.1403e+08 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TCONS_00000014 XLOC_000017 - chr1:3194302-3194329 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000015 XLOC_000019 - chr1:3195083-3195110 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000016 XLOC_000020 - chr1:3195450-3195477 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000017 XLOC_000021 - chr1:3197089-3197116 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000018 XLOC_000022 - chr1:3197246-3197273 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000019 XLOC_000023 - chr1:3197346-3197373 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000020 XLOC_000025 - chr1:3200022-3200191 q1 q2 NOTEST 959058 705514 -0.442943 0.376027 0.706897 1 no +TCONS_00000021 XLOC_000026 - chr1:3200325-3200352 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000022 XLOC_000029 - chr1:3201077-3201481 q1 q2 NOTEST 77513.9 285108 1.87898 -1.76152 0.0781506 1 no +TCONS_00000023 XLOC_000031 - chr1:3201672-3201699 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000024 XLOC_000034 Xkr4 chr1:3212213-3212292 q1 q2 OK 0 8.3103e+06 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TCONS_00000025 XLOC_000035 Xkr4 chr1:3212367-3212439 q1 q2 OK 0 2.4671e+07 1.79769e+308 1.79769e+308 0.0512352 0.150149 no +TCONS_00000026 XLOC_000037 Xkr4 chr1:3213095-3213242 q1 q2 NOTEST 3.99739e+06 1.82908e+06 -1.12794 0.781831 0.434314 1 no +TCONS_00000027 XLOC_000040 Xkr4 chr1:3242633-3242923 q1 q2 NOTEST 56312.4 372827 2.72698 -1.67622 0.0936947 1 no +TCONS_00000028 XLOC_000042 Xkr4 chr1:3243018-3243079 q1 q2 OK 0 2.66226e+07 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TCONS_00000029 XLOC_000044 Xkr4 chr1:3243347-3243401 q1 q2 OK 0 5.0951e+07 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TCONS_00000030 XLOC_000046 Xkr4 chr1:3256974-3257011 q1 q2 OK 0 2.06814e+09 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TCONS_00000031 XLOC_000048 Xkr4 chr1:3277190-3277218 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000033 XLOC_000052 Xkr4 chr1:3280686-3280741 q1 q2 OK 0 2.29576e+07 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TCONS_00000034 XLOC_000057 Xkr4 chr1:3290488-3290553 q1 q2 OK 0 9.79535e+06 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TCONS_00000037 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000038 XLOC_000062 Xkr4 chr1:3300051-3300078 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000039 XLOC_000065 Xkr4 chr1:3318999-3319051 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000040 XLOC_000068 Xkr4 chr1:3355887-3356119 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000041 XLOC_000071 Xkr4 chr1:3363214-3363278 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000042 XLOC_000073 Xkr4 chr1:3363753-3363849 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000043 XLOC_000075 Xkr4 chr1:3367135-3367162 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000044 XLOC_000077 Xkr4 chr1:3367333-3367382 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000045 XLOC_000080 Xkr4 chr1:3377211-3377262 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000046 XLOC_000083 Xkr4 chr1:3391325-3391352 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000047 XLOC_000084 Xkr4 chr1:3435841-3435880 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000048 XLOC_000085 Xkr4 chr1:3447761-3447788 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000049 XLOC_000086 Xkr4 chr1:3450906-3450965 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000050 XLOC_000087 Xkr4 chr1:3451051-3451109 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000051 XLOC_000004 - chr1:3174765-3174792 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000052 XLOC_000005 - chr1:3187401-3187428 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000053 XLOC_000006 - chr1:3188521-3188548 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000054 XLOC_000007 - chr1:3189810-3190789 q1 q2 NOTEST 368900 429265 0.21864 -0.483034 0.629072 1 no +TCONS_00000055 XLOC_000008 - chr1:3190858-3191434 q1 q2 NOTEST 404373 338500 -0.25653 0.342922 0.731657 1 no +TCONS_00000056 XLOC_000009 - chr1:3191512-3192077 q1 q2 NOTEST 402276 686974 0.772069 -1.24554 0.212932 1 no +TCONS_00000057 XLOC_000010 - chr1:3192250-3192336 q1 q2 NOTEST 3.994e+06 2.93812e+06 -0.442943 0.217099 0.828131 1 no +TCONS_00000058 XLOC_000013 - chr1:3192649-3192676 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000059 XLOC_000018 - chr1:3194706-3194733 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000060 XLOC_000024 - chr1:3197425-3197452 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000062 XLOC_000027 - chr1:3200430-3200457 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000063 XLOC_000028 - chr1:3201007-3201039 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000065 XLOC_000030 - chr1:3201596-3201666 q1 q2 OK 1.89853e+07 0 -1.79769e+308 -1.79769e+308 0.0786496 0.150149 no +TCONS_00000066 XLOC_000032 - chr1:3201725-3201809 q1 q2 OK 1.31744e+07 0 -1.79769e+308 -1.79769e+308 0.0416323 0.150149 no +TCONS_00000067 XLOC_000033 Xkr4 chr1:3211521-3211561 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000068 XLOC_000036 Xkr4 chr1:3212717-3212801 q1 q2 NOTEST 4.39147e+06 0 -1.79769e+308 -1.79769e+308 0.158655 1 no +TCONS_00000069 XLOC_000037 Xkr4 chr1:3213095-3213242 q1 q2 NOTEST 1.36901e+06 0 0 0 1 1 no +TCONS_00000070 XLOC_000038 Xkr4 chr1:3240606-3240633 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000071 XLOC_000039 Xkr4 chr1:3242479-3242512 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000072 XLOC_000041 Xkr4 chr1:3242924-3243005 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000073 XLOC_000043 Xkr4 chr1:3243108-3243154 q1 q2 OK 9.99919e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TCONS_00000074 XLOC_000045 Xkr4 chr1:3254079-3254106 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000075 XLOC_000047 Xkr4 chr1:3277155-3277182 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000076 XLOC_000049 Xkr4 chr1:3277913-3278390 q1 q2 NOTEST 265614 41870.3 -2.66534 2.48499 0.0129556 1 no +TCONS_00000077 XLOC_000050 Xkr4 chr1:3280117-3280144 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000078 XLOC_000051 Xkr4 chr1:3280498-3280525 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000079 XLOC_000053 Xkr4 chr1:3282504-3282531 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000080 XLOC_000054 Xkr4 chr1:3282650-3282677 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000081 XLOC_000055 Xkr4 chr1:3282760-3282832 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000082 XLOC_000056 Xkr4 chr1:3284966-3284993 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000083 XLOC_000058 Xkr4 chr1:3290798-3290859 q1 q2 OK 1.8095e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TCONS_00000084 XLOC_000059 Xkr4 chr1:3290919-3291273 q1 q2 NOTEST 342218 75524 -2.17991 1.96162 0.049807 1 no +TCONS_00000085 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 NOTEST 937403 137917 -2.76487 1.66807 0.0953024 1 no +TCONS_00000086 XLOC_000061 Xkr4 chr1:3299691-3299733 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000087 XLOC_000063 Xkr4 chr1:3307748-3307775 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000088 XLOC_000064 Xkr4 chr1:3318620-3318647 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000089 XLOC_000066 Xkr4 chr1:3330527-3330554 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000090 XLOC_000067 Xkr4 chr1:3351240-3351311 q1 q2 OK 8.91489e+06 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TCONS_00000091 XLOC_000068 Xkr4 chr1:3355887-3356119 q1 q2 NOTEST 585828 0 -1.79769e+308 -1.79769e+308 0.0512352 1 no +TCONS_00000092 XLOC_000069 Xkr4 chr1:3356180-3356225 q1 q2 OK 1.19208e+08 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TCONS_00000093 XLOC_000070 Xkr4 chr1:3363076-3363176 q1 q2 NOTEST 4.42166e+06 0 -1.79769e+308 -1.79769e+308 0.0786496 1 no +TCONS_00000094 XLOC_000072 Xkr4 chr1:3363387-3363446 q1 q2 OK 4.28358e+07 0 -1.79769e+308 -1.79769e+308 0.0786496 0.150149 no +TCONS_00000095 XLOC_000074 Xkr4 chr1:3364871-3364919 q1 q2 OK 7.29939e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TCONS_00000096 XLOC_000076 Xkr4 chr1:3367210-3367237 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000097 XLOC_000078 Xkr4 chr1:3369580-3369607 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000098 XLOC_000079 Xkr4 chr1:3375001-3375028 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000099 XLOC_000081 Xkr4 chr1:3379888-3379915 q1 q2 NOTEST 0 0 0 0 1 1 no +TCONS_00000100 XLOC_000082 Xkr4 chr1:3386739-3386836 q1 q2 NOTEST 0 0 0 0 1 1 no
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out10.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,88 @@ +test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 sqrt(JS) test_stat p_value q_value significant +XLOC_000001 XLOC_000001 Xkr4 chr1:3204754-3204833 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000002 XLOC_000002 - chr1:3111449-3111490 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000003 XLOC_000003 - chr1:3111545-3111576 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000004 XLOC_000004 - chr1:3174765-3174792 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000005 XLOC_000005 - chr1:3187401-3187428 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000006 XLOC_000006 - chr1:3188521-3188548 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000007 XLOC_000007 - chr1:3189810-3190789 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000008 XLOC_000008 - chr1:3190858-3191434 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000009 XLOC_000009 - chr1:3191512-3192077 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000010 XLOC_000010 - chr1:3192250-3192336 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000011 XLOC_000011 - chr1:3192441-3192494 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000012 XLOC_000012 - chr1:3192550-3192629 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000013 XLOC_000013 - chr1:3192649-3192676 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000014 XLOC_000014 - chr1:3192731-3192811 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000015 XLOC_000015 - chr1:3192940-3193042 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000016 XLOC_000016 - chr1:3194185-3194226 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000017 XLOC_000017 - chr1:3194302-3194329 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000018 XLOC_000018 - chr1:3194706-3194733 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000019 XLOC_000019 - chr1:3195083-3195110 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000020 XLOC_000020 - chr1:3195450-3195477 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000021 XLOC_000021 - chr1:3197089-3197116 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000022 XLOC_000022 - chr1:3197246-3197273 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000023 XLOC_000023 - chr1:3197346-3197373 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000024 XLOC_000024 - chr1:3197425-3197452 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000025 XLOC_000025 - chr1:3200022-3200191 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000026 XLOC_000026 - chr1:3200325-3200352 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000027 XLOC_000027 - chr1:3200430-3200457 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000028 XLOC_000028 - chr1:3201007-3201039 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000029 XLOC_000029 - chr1:3201077-3201481 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000030 XLOC_000030 - chr1:3201596-3201666 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000031 XLOC_000031 - chr1:3201672-3201699 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000032 XLOC_000032 - chr1:3201725-3201809 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000033 XLOC_000033 Xkr4 chr1:3211521-3211561 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000034 XLOC_000034 Xkr4 chr1:3212213-3212292 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000035 XLOC_000035 Xkr4 chr1:3212367-3212439 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000036 XLOC_000036 Xkr4 chr1:3212717-3212801 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000037 XLOC_000037 Xkr4 chr1:3213095-3213242 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000038 XLOC_000038 Xkr4 chr1:3240606-3240633 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000039 XLOC_000039 Xkr4 chr1:3242479-3242512 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000040 XLOC_000040 Xkr4 chr1:3242633-3242923 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000041 XLOC_000041 Xkr4 chr1:3242924-3243005 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000042 XLOC_000042 Xkr4 chr1:3243018-3243079 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000043 XLOC_000043 Xkr4 chr1:3243108-3243154 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000044 XLOC_000044 Xkr4 chr1:3243347-3243401 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000045 XLOC_000045 Xkr4 chr1:3254079-3254106 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000046 XLOC_000046 Xkr4 chr1:3256974-3257011 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000047 XLOC_000047 Xkr4 chr1:3277155-3277182 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000048 XLOC_000048 Xkr4 chr1:3277190-3277218 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000049 XLOC_000049 Xkr4 chr1:3277913-3278390 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000050 XLOC_000050 Xkr4 chr1:3280117-3280144 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000051 XLOC_000051 Xkr4 chr1:3280498-3280525 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000052 XLOC_000052 Xkr4 chr1:3280686-3280741 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000053 XLOC_000053 Xkr4 chr1:3282504-3282531 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000054 XLOC_000054 Xkr4 chr1:3282650-3282677 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000055 XLOC_000055 Xkr4 chr1:3282760-3282832 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000056 XLOC_000056 Xkr4 chr1:3284966-3284993 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000057 XLOC_000057 Xkr4 chr1:3290488-3290553 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000058 XLOC_000058 Xkr4 chr1:3290798-3290859 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000059 XLOC_000059 Xkr4 chr1:3290919-3291273 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000060 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000061 XLOC_000061 Xkr4 chr1:3299691-3299733 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000062 XLOC_000062 Xkr4 chr1:3300051-3300078 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000063 XLOC_000063 Xkr4 chr1:3307748-3307775 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000064 XLOC_000064 Xkr4 chr1:3318620-3318647 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000065 XLOC_000065 Xkr4 chr1:3318999-3319051 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000066 XLOC_000066 Xkr4 chr1:3330527-3330554 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000067 XLOC_000067 Xkr4 chr1:3351240-3351311 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000068 XLOC_000068 Xkr4 chr1:3355887-3356119 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000069 XLOC_000069 Xkr4 chr1:3356180-3356225 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000070 XLOC_000070 Xkr4 chr1:3363076-3363176 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000071 XLOC_000071 Xkr4 chr1:3363214-3363278 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000072 XLOC_000072 Xkr4 chr1:3363387-3363446 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000073 XLOC_000073 Xkr4 chr1:3363753-3363849 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000074 XLOC_000074 Xkr4 chr1:3364871-3364919 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000075 XLOC_000075 Xkr4 chr1:3367135-3367162 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000076 XLOC_000076 Xkr4 chr1:3367210-3367237 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000077 XLOC_000077 Xkr4 chr1:3367333-3367382 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000078 XLOC_000078 Xkr4 chr1:3369580-3369607 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000079 XLOC_000079 Xkr4 chr1:3375001-3375028 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000080 XLOC_000080 Xkr4 chr1:3377211-3377262 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000081 XLOC_000081 Xkr4 chr1:3379888-3379915 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000082 XLOC_000082 Xkr4 chr1:3386739-3386836 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000083 XLOC_000083 Xkr4 chr1:3391325-3391352 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000084 XLOC_000084 Xkr4 chr1:3435841-3435880 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000085 XLOC_000085 Xkr4 chr1:3447761-3447788 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000086 XLOC_000086 Xkr4 chr1:3450906-3450965 q1 q2 LOWDATA 0 0 0 0 0 1 no +XLOC_000087 XLOC_000087 Xkr4 chr1:3451051-3451109 q1 q2 LOWDATA 0 0 0 0 0 1 no
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out11.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,1 @@ +test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 sqrt(JS) test_stat p_value q_value significant
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out2.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,88 @@ +test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 log2(fold_change) test_stat p_value q_value significant +XLOC_000001 XLOC_000001 Xkr4 chr1:3204754-3204833 q1 q2 OK 0 8.3103e+06 1.79769e+308 1.79769e+308 0.0786496 0.157299 no +XLOC_000002 XLOC_000002 - chr1:3111449-3111490 q1 q2 OK 0 2.1403e+08 1.79769e+308 1.79769e+308 0.158655 0.16621 no +XLOC_000003 XLOC_000003 - chr1:3111545-3111576 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000004 XLOC_000004 - chr1:3174765-3174792 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000005 XLOC_000005 - chr1:3187401-3187428 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000006 XLOC_000006 - chr1:3188521-3188548 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000007 XLOC_000007 - chr1:3189810-3190789 q1 q2 NOTEST 368900 429265 0.21864 -0.483034 0.629072 1 no +XLOC_000008 XLOC_000008 - chr1:3190858-3191434 q1 q2 NOTEST 404373 338500 -0.25653 0.342922 0.731657 1 no +XLOC_000009 XLOC_000009 - chr1:3191512-3192077 q1 q2 NOTEST 402276 686974 0.772069 -1.24554 0.212932 1 no +XLOC_000010 XLOC_000010 - chr1:3192250-3192336 q1 q2 NOTEST 3.994e+06 2.93812e+06 -0.442943 0.217099 0.828131 1 no +XLOC_000011 XLOC_000011 - chr1:3192441-3192494 q1 q2 OK 0 5.68095e+07 1.79769e+308 1.79769e+308 0.0786496 0.157299 no +XLOC_000012 XLOC_000012 - chr1:3192550-3192629 q1 q2 OK 0 4.15515e+06 1.79769e+308 1.79769e+308 0.158655 0.16621 no +XLOC_000013 XLOC_000013 - chr1:3192649-3192676 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000014 XLOC_000014 - chr1:3192731-3192811 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000015 XLOC_000015 - chr1:3192940-3193042 q1 q2 OK 0 6.02976e+06 1.79769e+308 1.79769e+308 0.0512352 0.157299 no +XLOC_000016 XLOC_000016 - chr1:3194185-3194226 q1 q2 OK 0 2.1403e+08 1.79769e+308 1.79769e+308 0.158655 0.16621 no +XLOC_000017 XLOC_000017 - chr1:3194302-3194329 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000018 XLOC_000018 - chr1:3194706-3194733 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000019 XLOC_000019 - chr1:3195083-3195110 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000020 XLOC_000020 - chr1:3195450-3195477 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000021 XLOC_000021 - chr1:3197089-3197116 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000022 XLOC_000022 - chr1:3197246-3197273 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000023 XLOC_000023 - chr1:3197346-3197373 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000024 XLOC_000024 - chr1:3197425-3197452 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000025 XLOC_000025 - chr1:3200022-3200191 q1 q2 NOTEST 959058 705514 -0.442943 0.376027 0.706897 1 no +XLOC_000026 XLOC_000026 - chr1:3200325-3200352 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000027 XLOC_000027 - chr1:3200430-3200457 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000028 XLOC_000028 - chr1:3201007-3201039 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000029 XLOC_000029 - chr1:3201077-3201481 q1 q2 NOTEST 77513.9 285108 1.87898 -1.76152 0.0781506 1 no +XLOC_000030 XLOC_000030 - chr1:3201596-3201666 q1 q2 OK 1.89853e+07 0 -1.79769e+308 -1.79769e+308 0.0786496 0.157299 no +XLOC_000031 XLOC_000031 - chr1:3201672-3201699 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000032 XLOC_000032 - chr1:3201725-3201809 q1 q2 OK 1.31744e+07 0 -1.79769e+308 -1.79769e+308 0.0416323 0.157299 no +XLOC_000033 XLOC_000033 Xkr4 chr1:3211521-3211561 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000034 XLOC_000034 Xkr4 chr1:3212213-3212292 q1 q2 OK 0 8.3103e+06 1.79769e+308 1.79769e+308 0.0786496 0.157299 no +XLOC_000035 XLOC_000035 Xkr4 chr1:3212367-3212439 q1 q2 OK 0 2.4671e+07 1.79769e+308 1.79769e+308 0.0512352 0.157299 no +XLOC_000036 XLOC_000036 Xkr4 chr1:3212717-3212801 q1 q2 NOTEST 4.39147e+06 0 -1.79769e+308 -1.79769e+308 0.158655 1 no +XLOC_000037 XLOC_000037 Xkr4 chr1:3213095-3213242 q1 q2 OK 5.3664e+06 1.82908e+06 -1.55284 0.839459 0.401212 0.401212 no +XLOC_000038 XLOC_000038 Xkr4 chr1:3240606-3240633 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000039 XLOC_000039 Xkr4 chr1:3242479-3242512 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000040 XLOC_000040 Xkr4 chr1:3242633-3242923 q1 q2 NOTEST 56312.4 372827 2.72698 -1.67622 0.0936947 1 no +XLOC_000041 XLOC_000041 Xkr4 chr1:3242924-3243005 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000042 XLOC_000042 Xkr4 chr1:3243018-3243079 q1 q2 OK 0 2.66226e+07 1.79769e+308 1.79769e+308 0.0786496 0.157299 no +XLOC_000043 XLOC_000043 Xkr4 chr1:3243108-3243154 q1 q2 OK 9.99919e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.16621 no +XLOC_000044 XLOC_000044 Xkr4 chr1:3243347-3243401 q1 q2 OK 0 5.0951e+07 1.79769e+308 1.79769e+308 0.0786496 0.157299 no +XLOC_000045 XLOC_000045 Xkr4 chr1:3254079-3254106 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000046 XLOC_000046 Xkr4 chr1:3256974-3257011 q1 q2 OK 0 2.06814e+09 1.79769e+308 1.79769e+308 0.0786496 0.157299 no +XLOC_000047 XLOC_000047 Xkr4 chr1:3277155-3277182 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000048 XLOC_000048 Xkr4 chr1:3277190-3277218 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000049 XLOC_000049 Xkr4 chr1:3277913-3278390 q1 q2 NOTEST 265614 41870.3 -2.66534 2.48499 0.0129556 1 no +XLOC_000050 XLOC_000050 Xkr4 chr1:3280117-3280144 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000051 XLOC_000051 Xkr4 chr1:3280498-3280525 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000052 XLOC_000052 Xkr4 chr1:3280686-3280741 q1 q2 OK 0 2.29576e+07 1.79769e+308 1.79769e+308 0.158655 0.16621 no +XLOC_000053 XLOC_000053 Xkr4 chr1:3282504-3282531 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000054 XLOC_000054 Xkr4 chr1:3282650-3282677 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000055 XLOC_000055 Xkr4 chr1:3282760-3282832 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000056 XLOC_000056 Xkr4 chr1:3284966-3284993 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000057 XLOC_000057 Xkr4 chr1:3290488-3290553 q1 q2 OK 0 9.79535e+06 1.79769e+308 1.79769e+308 0.158655 0.16621 no +XLOC_000058 XLOC_000058 Xkr4 chr1:3290798-3290859 q1 q2 OK 1.8095e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.16621 no +XLOC_000059 XLOC_000059 Xkr4 chr1:3290919-3291273 q1 q2 NOTEST 342218 75524 -2.17991 1.96162 0.049807 1 no +XLOC_000060 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 NOTEST 937403 137917 -2.76487 1.66807 0.0953024 1 no +XLOC_000061 XLOC_000061 Xkr4 chr1:3299691-3299733 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000062 XLOC_000062 Xkr4 chr1:3300051-3300078 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000063 XLOC_000063 Xkr4 chr1:3307748-3307775 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000064 XLOC_000064 Xkr4 chr1:3318620-3318647 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000065 XLOC_000065 Xkr4 chr1:3318999-3319051 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000066 XLOC_000066 Xkr4 chr1:3330527-3330554 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000067 XLOC_000067 Xkr4 chr1:3351240-3351311 q1 q2 OK 8.91489e+06 0 -1.79769e+308 -1.79769e+308 0.158655 0.16621 no +XLOC_000068 XLOC_000068 Xkr4 chr1:3355887-3356119 q1 q2 NOTEST 585828 0 -1.79769e+308 -1.79769e+308 0.0512352 1 no +XLOC_000069 XLOC_000069 Xkr4 chr1:3356180-3356225 q1 q2 OK 1.19208e+08 0 -1.79769e+308 -1.79769e+308 0.158655 0.16621 no +XLOC_000070 XLOC_000070 Xkr4 chr1:3363076-3363176 q1 q2 NOTEST 4.42166e+06 0 -1.79769e+308 -1.79769e+308 0.0786496 1 no +XLOC_000071 XLOC_000071 Xkr4 chr1:3363214-3363278 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000072 XLOC_000072 Xkr4 chr1:3363387-3363446 q1 q2 OK 4.28358e+07 0 -1.79769e+308 -1.79769e+308 0.0786496 0.157299 no +XLOC_000073 XLOC_000073 Xkr4 chr1:3363753-3363849 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000074 XLOC_000074 Xkr4 chr1:3364871-3364919 q1 q2 OK 7.29939e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.16621 no +XLOC_000075 XLOC_000075 Xkr4 chr1:3367135-3367162 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000076 XLOC_000076 Xkr4 chr1:3367210-3367237 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000077 XLOC_000077 Xkr4 chr1:3367333-3367382 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000078 XLOC_000078 Xkr4 chr1:3369580-3369607 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000079 XLOC_000079 Xkr4 chr1:3375001-3375028 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000080 XLOC_000080 Xkr4 chr1:3377211-3377262 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000081 XLOC_000081 Xkr4 chr1:3379888-3379915 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000082 XLOC_000082 Xkr4 chr1:3386739-3386836 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000083 XLOC_000083 Xkr4 chr1:3391325-3391352 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000084 XLOC_000084 Xkr4 chr1:3435841-3435880 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000085 XLOC_000085 Xkr4 chr1:3447761-3447788 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000086 XLOC_000086 Xkr4 chr1:3450906-3450965 q1 q2 NOTEST 0 0 0 0 1 1 no +XLOC_000087 XLOC_000087 Xkr4 chr1:3451051-3451109 q1 q2 NOTEST 0 0 0 0 1 1 no
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out3.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,91 @@ +test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 log2(fold_change) test_stat p_value q_value significant +TSS1 XLOC_000001 Xkr4 chr1:3204754-3204833 q1 q2 OK 0 8.3103e+06 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TSS11 XLOC_000008 - chr1:3190858-3191434 q1 q2 NOTEST 404373 338500 -0.25653 0.342922 0.731657 1 no +TSS12 XLOC_000009 - chr1:3191512-3192077 q1 q2 NOTEST 402276 686974 0.772069 -1.24554 0.212932 1 no +TSS15 XLOC_000010 - chr1:3192250-3192336 q1 q2 NOTEST 3.994e+06 2.93812e+06 -0.442943 0.217099 0.828131 1 no +TSS16 XLOC_000011 - chr1:3192441-3192494 q1 q2 OK 0 5.68095e+07 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TSS17 XLOC_000012 - chr1:3192550-3192629 q1 q2 OK 0 4.15515e+06 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TSS18 XLOC_000013 - chr1:3192649-3192676 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS19 XLOC_000014 - chr1:3192731-3192811 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS2 XLOC_000002 - chr1:3111449-3111490 q1 q2 OK 0 2.1403e+08 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TSS20 XLOC_000015 - chr1:3192940-3193042 q1 q2 OK 0 6.02976e+06 1.79769e+308 1.79769e+308 0.0512352 0.150149 no +TSS21 XLOC_000016 - chr1:3194185-3194226 q1 q2 OK 0 2.1403e+08 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TSS22 XLOC_000017 - chr1:3194302-3194329 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS23 XLOC_000018 - chr1:3194706-3194733 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS24 XLOC_000019 - chr1:3195083-3195110 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS25 XLOC_000020 - chr1:3195450-3195477 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS26 XLOC_000021 - chr1:3197089-3197116 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS27 XLOC_000022 - chr1:3197246-3197273 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS28 XLOC_000023 - chr1:3197346-3197373 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS29 XLOC_000024 - chr1:3197425-3197452 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS3 XLOC_000003 - chr1:3111545-3111576 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS30 XLOC_000025 - chr1:3200022-3200191 q1 q2 NOTEST 959058 705514 -0.442943 0.376027 0.706897 1 no +TSS32 XLOC_000026 - chr1:3200325-3200352 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS33 XLOC_000027 - chr1:3200430-3200457 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS34 XLOC_000028 - chr1:3201007-3201039 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS35 XLOC_000029 - chr1:3201077-3201481 q1 q2 NOTEST 77513.9 285108 1.87898 -1.76152 0.0781506 1 no +TSS37 XLOC_000030 - chr1:3201596-3201666 q1 q2 OK 1.89853e+07 0 -1.79769e+308 -1.79769e+308 0.0786496 0.150149 no +TSS38 XLOC_000031 - chr1:3201672-3201699 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS39 XLOC_000032 - chr1:3201725-3201809 q1 q2 OK 1.31744e+07 0 -1.79769e+308 -1.79769e+308 0.0416323 0.150149 no +TSS4 XLOC_000004 - chr1:3174765-3174792 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS40 XLOC_000033 Xkr4 chr1:3211521-3211561 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS41 XLOC_000034 Xkr4 chr1:3212213-3212292 q1 q2 OK 0 8.3103e+06 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TSS42 XLOC_000035 Xkr4 chr1:3212367-3212439 q1 q2 OK 0 2.4671e+07 1.79769e+308 1.79769e+308 0.0512352 0.150149 no +TSS43 XLOC_000036 Xkr4 chr1:3212717-3212801 q1 q2 NOTEST 4.39147e+06 0 -1.79769e+308 -1.79769e+308 0.158655 1 no +TSS44 XLOC_000037 Xkr4 chr1:3213095-3213242 q1 q2 NOTEST 3.99739e+06 1.82908e+06 -1.12794 0.489836 0.62425 1 no +TSS45 XLOC_000037 Xkr4 chr1:3213095-3213242 q1 q2 NOTEST 1.36901e+06 0 0 0 1 1 no +TSS46 XLOC_000038 Xkr4 chr1:3240606-3240633 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS47 XLOC_000039 Xkr4 chr1:3242479-3242512 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS48 XLOC_000040 Xkr4 chr1:3242633-3242923 q1 q2 NOTEST 56312.4 372827 2.72698 -1.67622 0.0936947 1 no +TSS49 XLOC_000041 Xkr4 chr1:3242924-3243005 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS5 XLOC_000005 - chr1:3187401-3187428 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS50 XLOC_000042 Xkr4 chr1:3243018-3243079 q1 q2 OK 0 2.66226e+07 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TSS51 XLOC_000043 Xkr4 chr1:3243108-3243154 q1 q2 OK 9.99919e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TSS52 XLOC_000044 Xkr4 chr1:3243347-3243401 q1 q2 OK 0 5.0951e+07 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TSS53 XLOC_000045 Xkr4 chr1:3254079-3254106 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS54 XLOC_000046 Xkr4 chr1:3256974-3257011 q1 q2 OK 0 2.06814e+09 1.79769e+308 1.79769e+308 0.0786496 0.150149 no +TSS55 XLOC_000047 Xkr4 chr1:3277155-3277182 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS56 XLOC_000048 Xkr4 chr1:3277190-3277218 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS57 XLOC_000049 Xkr4 chr1:3277913-3278390 q1 q2 NOTEST 265614 41870.3 -2.66534 2.48499 0.0129556 1 no +TSS59 XLOC_000050 Xkr4 chr1:3280117-3280144 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS6 XLOC_000006 - chr1:3188521-3188548 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS60 XLOC_000051 Xkr4 chr1:3280498-3280525 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS61 XLOC_000052 Xkr4 chr1:3280686-3280741 q1 q2 OK 0 2.29576e+07 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TSS62 XLOC_000053 Xkr4 chr1:3282504-3282531 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS63 XLOC_000054 Xkr4 chr1:3282650-3282677 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS64 XLOC_000055 Xkr4 chr1:3282760-3282832 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS65 XLOC_000056 Xkr4 chr1:3284966-3284993 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS66 XLOC_000057 Xkr4 chr1:3290488-3290553 q1 q2 OK 0 9.79535e+06 1.79769e+308 1.79769e+308 0.158655 0.158655 no +TSS67 XLOC_000058 Xkr4 chr1:3290798-3290859 q1 q2 OK 1.8095e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TSS68 XLOC_000059 Xkr4 chr1:3290919-3291273 q1 q2 NOTEST 342218 75524 -2.17991 1.96162 0.049807 1 no +TSS7 XLOC_000007 - chr1:3189810-3190789 q1 q2 NOTEST 368900 429265 0.21864 -0.483034 0.629072 1 no +TSS70 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 NOTEST 937403 137917 -2.76487 1.66807 0.0953024 1 no +TSS71 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS72 XLOC_000061 Xkr4 chr1:3299691-3299733 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS73 XLOC_000062 Xkr4 chr1:3300051-3300078 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS74 XLOC_000063 Xkr4 chr1:3307748-3307775 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS75 XLOC_000064 Xkr4 chr1:3318620-3318647 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS76 XLOC_000065 Xkr4 chr1:3318999-3319051 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS77 XLOC_000066 Xkr4 chr1:3330527-3330554 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS78 XLOC_000067 Xkr4 chr1:3351240-3351311 q1 q2 OK 8.91489e+06 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TSS79 XLOC_000068 Xkr4 chr1:3355887-3356119 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS80 XLOC_000068 Xkr4 chr1:3355887-3356119 q1 q2 NOTEST 585828 0 -1.79769e+308 -1.79769e+308 0.0512352 1 no +TSS81 XLOC_000069 Xkr4 chr1:3356180-3356225 q1 q2 OK 1.19208e+08 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TSS82 XLOC_000070 Xkr4 chr1:3363076-3363176 q1 q2 NOTEST 4.42166e+06 0 -1.79769e+308 -1.79769e+308 0.0786496 1 no +TSS83 XLOC_000071 Xkr4 chr1:3363214-3363278 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS84 XLOC_000072 Xkr4 chr1:3363387-3363446 q1 q2 OK 4.28358e+07 0 -1.79769e+308 -1.79769e+308 0.0786496 0.150149 no +TSS85 XLOC_000073 Xkr4 chr1:3363753-3363849 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS86 XLOC_000074 Xkr4 chr1:3364871-3364919 q1 q2 OK 7.29939e+07 0 -1.79769e+308 -1.79769e+308 0.158655 0.158655 no +TSS87 XLOC_000075 Xkr4 chr1:3367135-3367162 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS88 XLOC_000076 Xkr4 chr1:3367210-3367237 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS89 XLOC_000077 Xkr4 chr1:3367333-3367382 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS90 XLOC_000078 Xkr4 chr1:3369580-3369607 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS91 XLOC_000079 Xkr4 chr1:3375001-3375028 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS92 XLOC_000080 Xkr4 chr1:3377211-3377262 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS93 XLOC_000081 Xkr4 chr1:3379888-3379915 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS94 XLOC_000082 Xkr4 chr1:3386739-3386836 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS95 XLOC_000083 Xkr4 chr1:3391325-3391352 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS96 XLOC_000084 Xkr4 chr1:3435841-3435880 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS97 XLOC_000085 Xkr4 chr1:3447761-3447788 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS98 XLOC_000086 Xkr4 chr1:3450906-3450965 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS99 XLOC_000087 Xkr4 chr1:3451051-3451109 q1 q2 NOTEST 0 0 0 0 1 1 no
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out4.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,1 @@ +test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 log2(fold_change) test_stat p_value q_value significant
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out5.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,91 @@ +tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage q1_FPKM q1_conf_lo q1_conf_hi q1_status q2_FPKM q2_conf_lo q2_conf_hi q2_status +TCONS_00000001 c Xkr4 XLOC_000001 Xkr4 TSS1 chr1:3204754-3204833 79 - 0 0 0 OK 8.3103e+06 0 2.00628e+07 OK +TCONS_00000002 - - XLOC_000002 - TSS2 chr1:3111449-3111490 41 - 0 0 0 OK 2.1403e+08 0 6.42089e+08 OK +TCONS_00000003 - - XLOC_000003 - TSS3 chr1:3111545-3111576 31 - 0 0 0 OK 0 0 0 OK +TCONS_00000009 - - XLOC_000011 - TSS16 chr1:3192441-3192494 53 - 0 0 0 OK 5.68095e+07 0 1.3715e+08 OK +TCONS_00000010 - - XLOC_000012 - TSS17 chr1:3192550-3192629 79 - 0 0 0 OK 4.15515e+06 0 1.24654e+07 OK +TCONS_00000011 - - XLOC_000014 - TSS19 chr1:3192731-3192811 80 - 0 0 0 OK 0 0 0 OK +TCONS_00000012 - - XLOC_000015 - TSS20 chr1:3192940-3193042 102 - 0 0 0 OK 6.02976e+06 0 1.34147e+07 OK +TCONS_00000013 - - XLOC_000016 - TSS21 chr1:3194185-3194226 41 - 0 0 0 OK 2.1403e+08 0 6.42089e+08 OK +TCONS_00000014 - - XLOC_000017 - TSS22 chr1:3194302-3194329 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000015 - - XLOC_000019 - TSS24 chr1:3195083-3195110 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000016 - - XLOC_000020 - TSS25 chr1:3195450-3195477 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000017 - - XLOC_000021 - TSS26 chr1:3197089-3197116 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000018 - - XLOC_000022 - TSS27 chr1:3197246-3197273 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000019 - - XLOC_000023 - TSS28 chr1:3197346-3197373 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000020 - - XLOC_000025 - TSS30 chr1:3200022-3200191 169 - 959058 0 2.06648e+06 OK 705514 0 1.52017e+06 OK +TCONS_00000021 - - XLOC_000026 - TSS32 chr1:3200325-3200352 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000022 - - XLOC_000029 - TSS35 chr1:3201077-3201481 404 - 77513.9 0 167019 OK 285108 21736.5 548480 OK +TCONS_00000023 - - XLOC_000031 - TSS38 chr1:3201672-3201699 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000024 i Xkr4 XLOC_000034 Xkr4 TSS41 chr1:3212213-3212292 79 - 0 0 0 OK 8.3103e+06 0 2.00628e+07 OK +TCONS_00000025 i Xkr4 XLOC_000035 Xkr4 TSS42 chr1:3212367-3212439 72 - 0 0 0 OK 2.4671e+07 0 5.48867e+07 OK +TCONS_00000026 i Xkr4 XLOC_000037 Xkr4 TSS44 chr1:3213095-3213242 97 - 3.99739e+06 3.99339e+06 4.00139e+06 LOWDATA 1.82908e+06 0 5.48723e+06 OK +TCONS_00000027 i Xkr4 XLOC_000040 Xkr4 TSS48 chr1:3242633-3242923 290 - 56312.4 0 168937 OK 372827 0 761430 OK +TCONS_00000028 i Xkr4 XLOC_000042 Xkr4 TSS50 chr1:3243018-3243079 61 - 0 0 0 OK 2.66226e+07 0 6.42725e+07 OK +TCONS_00000029 i Xkr4 XLOC_000044 Xkr4 TSS52 chr1:3243347-3243401 54 - 0 0 0 OK 5.0951e+07 0 1.23007e+08 OK +TCONS_00000030 i Xkr4 XLOC_000046 Xkr4 TSS54 chr1:3256974-3257011 37 - 0 0 0 OK 2.06814e+09 0 4.99293e+09 OK +TCONS_00000031 i Xkr4 XLOC_000048 Xkr4 TSS56 chr1:3277190-3277218 28 - 0 0 0 OK 0 0 0 OK +TCONS_00000033 i Xkr4 XLOC_000052 Xkr4 TSS61 chr1:3280686-3280741 55 - 0 0 0 OK 2.29576e+07 0 6.88728e+07 OK +TCONS_00000034 i Xkr4 XLOC_000057 Xkr4 TSS66 chr1:3290488-3290553 65 - 0 0 0 OK 9.79535e+06 0 2.9386e+07 OK +TCONS_00000037 i Xkr4 XLOC_000060 Xkr4 TSS71 chr1:3299443-3299664 55 - 0 0 0 OK 0 0 0 OK +TCONS_00000038 i Xkr4 XLOC_000062 Xkr4 TSS73 chr1:3300051-3300078 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000039 i Xkr4 XLOC_000065 Xkr4 TSS76 chr1:3318999-3319051 52 - 0 0 0 OK 0 0 0 OK +TCONS_00000040 i Xkr4 XLOC_000068 Xkr4 TSS79 chr1:3355887-3356119 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000041 i Xkr4 XLOC_000071 Xkr4 TSS83 chr1:3363214-3363278 64 - 0 0 0 OK 0 0 0 OK +TCONS_00000042 i Xkr4 XLOC_000073 Xkr4 TSS85 chr1:3363753-3363849 96 - 0 0 0 OK 0 0 0 OK +TCONS_00000043 i Xkr4 XLOC_000075 Xkr4 TSS87 chr1:3367135-3367162 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000044 i Xkr4 XLOC_000077 Xkr4 TSS89 chr1:3367333-3367382 49 - 0 0 0 OK 0 0 0 OK +TCONS_00000045 i Xkr4 XLOC_000080 Xkr4 TSS92 chr1:3377211-3377262 51 - 0 0 0 OK 0 0 0 OK +TCONS_00000046 i Xkr4 XLOC_000083 Xkr4 TSS95 chr1:3391325-3391352 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000047 i Xkr4 XLOC_000084 Xkr4 TSS96 chr1:3435841-3435880 39 - 0 0 0 OK 0 0 0 OK +TCONS_00000048 i Xkr4 XLOC_000085 Xkr4 TSS97 chr1:3447761-3447788 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000049 i Xkr4 XLOC_000086 Xkr4 TSS98 chr1:3450906-3450965 59 - 0 0 0 OK 0 0 0 OK +TCONS_00000050 i Xkr4 XLOC_000087 Xkr4 TSS99 chr1:3451051-3451109 58 - 0 0 0 OK 0 0 0 OK +TCONS_00000051 - - XLOC_000004 - TSS4 chr1:3174765-3174792 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000052 - - XLOC_000005 - TSS5 chr1:3187401-3187428 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000053 - - XLOC_000006 - TSS6 chr1:3188521-3188548 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000054 - - XLOC_000007 - TSS7 chr1:3189810-3190789 979 - 368900 151353 586447 OK 429265 337221 521309 OK +TCONS_00000055 - - XLOC_000008 - TSS11 chr1:3190858-3191434 576 - 404373 101434 707312 OK 338500 95761.5 581239 OK +TCONS_00000056 - - XLOC_000009 - TSS12 chr1:3191512-3192077 565 - 402276 96829.4 707722 OK 686974 410563 963384 OK +TCONS_00000057 - - XLOC_000010 - TSS15 chr1:3192250-3192336 86 - 3.994e+06 0 1.1982e+07 OK 2.93812e+06 0 8.81435e+06 OK +TCONS_00000058 - - XLOC_000013 - TSS18 chr1:3192649-3192676 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000059 - - XLOC_000018 - TSS23 chr1:3194706-3194733 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000060 - - XLOC_000024 - TSS29 chr1:3197425-3197452 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000062 - - XLOC_000027 - TSS33 chr1:3200430-3200457 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000063 - - XLOC_000028 - TSS34 chr1:3201007-3201039 32 - 0 0 0 OK 0 0 0 OK +TCONS_00000065 - - XLOC_000030 - TSS37 chr1:3201596-3201666 70 - 1.89853e+07 0 4.58345e+07 OK 0 0 0 OK +TCONS_00000066 - - XLOC_000032 - TSS39 chr1:3201725-3201809 84 - 1.31744e+07 0 2.83869e+07 OK 0 0 0 OK +TCONS_00000067 i Xkr4 XLOC_000033 Xkr4 TSS40 chr1:3211521-3211561 40 - 0 0 0 OK 0 0 0 OK +TCONS_00000068 i Xkr4 XLOC_000036 Xkr4 TSS43 chr1:3212717-3212801 84 - 4.39147e+06 0 1.31744e+07 OK 0 0 0 OK +TCONS_00000069 i Xkr4 XLOC_000037 Xkr4 TSS45 chr1:3213095-3213242 124 - 1.36901e+06 1.36667e+06 1.37135e+06 LOWDATA 0 0 0 OK +TCONS_00000070 i Xkr4 XLOC_000038 Xkr4 TSS46 chr1:3240606-3240633 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000071 i Xkr4 XLOC_000039 Xkr4 TSS47 chr1:3242479-3242512 33 - 0 0 0 OK 0 0 0 OK +TCONS_00000072 i Xkr4 XLOC_000041 Xkr4 TSS49 chr1:3242924-3243005 81 - 0 0 0 OK 0 0 0 OK +TCONS_00000073 i Xkr4 XLOC_000043 Xkr4 TSS51 chr1:3243108-3243154 46 - 9.99919e+07 0 2.99976e+08 OK 0 0 0 OK +TCONS_00000074 i Xkr4 XLOC_000045 Xkr4 TSS53 chr1:3254079-3254106 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000075 i Xkr4 XLOC_000047 Xkr4 TSS55 chr1:3277155-3277182 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000076 i Xkr4 XLOC_000049 Xkr4 TSS57 chr1:3277913-3278390 477 - 265614 16793 514436 OK 41870.3 0 90217.9 OK +TCONS_00000077 i Xkr4 XLOC_000050 Xkr4 TSS59 chr1:3280117-3280144 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000078 i Xkr4 XLOC_000051 Xkr4 TSS60 chr1:3280498-3280525 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000079 i Xkr4 XLOC_000053 Xkr4 TSS62 chr1:3282504-3282531 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000080 i Xkr4 XLOC_000054 Xkr4 TSS63 chr1:3282650-3282677 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000081 i Xkr4 XLOC_000055 Xkr4 TSS64 chr1:3282760-3282832 72 - 0 0 0 OK 0 0 0 OK +TCONS_00000082 i Xkr4 XLOC_000056 Xkr4 TSS65 chr1:3284966-3284993 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000083 i Xkr4 XLOC_000058 Xkr4 TSS67 chr1:3290798-3290859 61 - 1.8095e+07 0 5.4285e+07 OK 0 0 0 OK +TCONS_00000084 i Xkr4 XLOC_000059 Xkr4 TSS68 chr1:3290919-3291273 354 - 342218 0 691214 OK 75524 0 162732 OK +TCONS_00000085 i Xkr4 XLOC_000060 Xkr4 TSS70 chr1:3299443-3299664 197 - 937403 0 1.99795e+06 OK 137917 0 413751 OK +TCONS_00000086 i Xkr4 XLOC_000061 Xkr4 TSS72 chr1:3299691-3299733 42 - 0 0 0 OK 0 0 0 OK +TCONS_00000087 i Xkr4 XLOC_000063 Xkr4 TSS74 chr1:3307748-3307775 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000088 i Xkr4 XLOC_000064 Xkr4 TSS75 chr1:3318620-3318647 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000089 i Xkr4 XLOC_000066 Xkr4 TSS77 chr1:3330527-3330554 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000090 i Xkr4 XLOC_000067 Xkr4 TSS78 chr1:3351240-3351311 71 - 8.91489e+06 0 2.67447e+07 OK 0 0 0 OK +TCONS_00000091 i Xkr4 XLOC_000068 Xkr4 TSS80 chr1:3355887-3356119 212 - 585828 0 1.30332e+06 OK 0 0 0 OK +TCONS_00000092 i Xkr4 XLOC_000069 Xkr4 TSS81 chr1:3356180-3356225 45 - 1.19208e+08 0 3.57623e+08 OK 0 0 0 OK +TCONS_00000093 i Xkr4 XLOC_000070 Xkr4 TSS82 chr1:3363076-3363176 100 - 4.42166e+06 0 1.06748e+07 OK 0 0 0 OK +TCONS_00000094 i Xkr4 XLOC_000072 Xkr4 TSS84 chr1:3363387-3363446 59 - 4.28358e+07 0 1.03415e+08 OK 0 0 0 OK +TCONS_00000095 i Xkr4 XLOC_000074 Xkr4 TSS86 chr1:3364871-3364919 48 - 7.29939e+07 0 2.18982e+08 OK 0 0 0 OK +TCONS_00000096 i Xkr4 XLOC_000076 Xkr4 TSS88 chr1:3367210-3367237 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000097 i Xkr4 XLOC_000078 Xkr4 TSS90 chr1:3369580-3369607 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000098 i Xkr4 XLOC_000079 Xkr4 TSS91 chr1:3375001-3375028 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000099 i Xkr4 XLOC_000081 Xkr4 TSS93 chr1:3379888-3379915 27 - 0 0 0 OK 0 0 0 OK +TCONS_00000100 i Xkr4 XLOC_000082 Xkr4 TSS94 chr1:3386739-3386836 97 - 0 0 0 OK 0 0 0 OK
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out6.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,88 @@ +tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage q1_FPKM q1_conf_lo q1_conf_hi q1_status q2_FPKM q2_conf_lo q2_conf_hi q2_status +XLOC_000001 - - XLOC_000001 Xkr4 TSS1 chr1:3204754-3204833 - - 0 0 0 OK 8.3103e+06 0 2.00628e+07 OK +XLOC_000002 - - XLOC_000002 - TSS2 chr1:3111449-3111490 - - 0 0 0 OK 2.1403e+08 0 6.42089e+08 OK +XLOC_000003 - - XLOC_000003 - TSS3 chr1:3111545-3111576 - - 0 0 0 OK 0 0 0 OK +XLOC_000004 - - XLOC_000004 - TSS4 chr1:3174765-3174792 - - 0 0 0 OK 0 0 0 OK +XLOC_000005 - - XLOC_000005 - TSS5 chr1:3187401-3187428 - - 0 0 0 OK 0 0 0 OK +XLOC_000006 - - XLOC_000006 - TSS6 chr1:3188521-3188548 - - 0 0 0 OK 0 0 0 OK +XLOC_000007 - - XLOC_000007 - TSS7 chr1:3189810-3190789 - - 368900 151353 586447 OK 429265 337221 521309 OK +XLOC_000008 - - XLOC_000008 - TSS11 chr1:3190858-3191434 - - 404373 101434 707312 OK 338500 95761.5 581239 OK +XLOC_000009 - - XLOC_000009 - TSS12 chr1:3191512-3192077 - - 402276 96829.4 707722 OK 686974 410563 963384 OK +XLOC_000010 - - XLOC_000010 - TSS15 chr1:3192250-3192336 - - 3.994e+06 0 1.1982e+07 OK 2.93812e+06 0 8.81435e+06 OK +XLOC_000011 - - XLOC_000011 - TSS16 chr1:3192441-3192494 - - 0 0 0 OK 5.68095e+07 0 1.3715e+08 OK +XLOC_000012 - - XLOC_000012 - TSS17 chr1:3192550-3192629 - - 0 0 0 OK 4.15515e+06 0 1.24654e+07 OK +XLOC_000013 - - XLOC_000013 - TSS18 chr1:3192649-3192676 - - 0 0 0 OK 0 0 0 OK +XLOC_000014 - - XLOC_000014 - TSS19 chr1:3192731-3192811 - - 0 0 0 OK 0 0 0 OK +XLOC_000015 - - XLOC_000015 - TSS20 chr1:3192940-3193042 - - 0 0 0 OK 6.02976e+06 0 1.34147e+07 OK +XLOC_000016 - - XLOC_000016 - TSS21 chr1:3194185-3194226 - - 0 0 0 OK 2.1403e+08 0 6.42089e+08 OK +XLOC_000017 - - XLOC_000017 - TSS22 chr1:3194302-3194329 - - 0 0 0 OK 0 0 0 OK +XLOC_000018 - - XLOC_000018 - TSS23 chr1:3194706-3194733 - - 0 0 0 OK 0 0 0 OK +XLOC_000019 - - XLOC_000019 - TSS24 chr1:3195083-3195110 - - 0 0 0 OK 0 0 0 OK +XLOC_000020 - - XLOC_000020 - TSS25 chr1:3195450-3195477 - - 0 0 0 OK 0 0 0 OK +XLOC_000021 - - XLOC_000021 - TSS26 chr1:3197089-3197116 - - 0 0 0 OK 0 0 0 OK +XLOC_000022 - - XLOC_000022 - TSS27 chr1:3197246-3197273 - - 0 0 0 OK 0 0 0 OK +XLOC_000023 - - XLOC_000023 - TSS28 chr1:3197346-3197373 - - 0 0 0 OK 0 0 0 OK +XLOC_000024 - - XLOC_000024 - TSS29 chr1:3197425-3197452 - - 0 0 0 OK 0 0 0 OK +XLOC_000025 - - XLOC_000025 - TSS30 chr1:3200022-3200191 - - 959058 0 2.06648e+06 OK 705514 0 1.52017e+06 OK +XLOC_000026 - - XLOC_000026 - TSS32 chr1:3200325-3200352 - - 0 0 0 OK 0 0 0 OK +XLOC_000027 - - XLOC_000027 - TSS33 chr1:3200430-3200457 - - 0 0 0 OK 0 0 0 OK +XLOC_000028 - - XLOC_000028 - TSS34 chr1:3201007-3201039 - - 0 0 0 OK 0 0 0 OK +XLOC_000029 - - XLOC_000029 - TSS35 chr1:3201077-3201481 - - 77513.9 0 167019 OK 285108 21736.5 548480 OK +XLOC_000030 - - XLOC_000030 - TSS37 chr1:3201596-3201666 - - 1.89853e+07 0 4.58345e+07 OK 0 0 0 OK +XLOC_000031 - - XLOC_000031 - TSS38 chr1:3201672-3201699 - - 0 0 0 OK 0 0 0 OK +XLOC_000032 - - XLOC_000032 - TSS39 chr1:3201725-3201809 - - 1.31744e+07 0 2.83869e+07 OK 0 0 0 OK +XLOC_000033 - - XLOC_000033 Xkr4 TSS40 chr1:3211521-3211561 - - 0 0 0 OK 0 0 0 OK +XLOC_000034 - - XLOC_000034 Xkr4 TSS41 chr1:3212213-3212292 - - 0 0 0 OK 8.3103e+06 0 2.00628e+07 OK +XLOC_000035 - - XLOC_000035 Xkr4 TSS42 chr1:3212367-3212439 - - 0 0 0 OK 2.4671e+07 0 5.48867e+07 OK +XLOC_000036 - - XLOC_000036 Xkr4 TSS43 chr1:3212717-3212801 - - 4.39147e+06 0 1.31744e+07 OK 0 0 0 OK +XLOC_000037 - - XLOC_000037 Xkr4 TSS44,TSS45 chr1:3213095-3213242 - - 5.3664e+06 0 1.39795e+07 LOWDATA 1.82908e+06 0 5.48723e+06 OK +XLOC_000038 - - XLOC_000038 Xkr4 TSS46 chr1:3240606-3240633 - - 0 0 0 OK 0 0 0 OK +XLOC_000039 - - XLOC_000039 Xkr4 TSS47 chr1:3242479-3242512 - - 0 0 0 OK 0 0 0 OK +XLOC_000040 - - XLOC_000040 Xkr4 TSS48 chr1:3242633-3242923 - - 56312.4 0 168937 OK 372827 0 761430 OK +XLOC_000041 - - XLOC_000041 Xkr4 TSS49 chr1:3242924-3243005 - - 0 0 0 OK 0 0 0 OK +XLOC_000042 - - XLOC_000042 Xkr4 TSS50 chr1:3243018-3243079 - - 0 0 0 OK 2.66226e+07 0 6.42725e+07 OK +XLOC_000043 - - XLOC_000043 Xkr4 TSS51 chr1:3243108-3243154 - - 9.99919e+07 0 2.99976e+08 OK 0 0 0 OK +XLOC_000044 - - XLOC_000044 Xkr4 TSS52 chr1:3243347-3243401 - - 0 0 0 OK 5.0951e+07 0 1.23007e+08 OK +XLOC_000045 - - XLOC_000045 Xkr4 TSS53 chr1:3254079-3254106 - - 0 0 0 OK 0 0 0 OK +XLOC_000046 - - XLOC_000046 Xkr4 TSS54 chr1:3256974-3257011 - - 0 0 0 OK 2.06814e+09 0 4.99293e+09 OK +XLOC_000047 - - XLOC_000047 Xkr4 TSS55 chr1:3277155-3277182 - - 0 0 0 OK 0 0 0 OK +XLOC_000048 - - XLOC_000048 Xkr4 TSS56 chr1:3277190-3277218 - - 0 0 0 OK 0 0 0 OK +XLOC_000049 - - XLOC_000049 Xkr4 TSS57 chr1:3277913-3278390 - - 265614 16793 514436 OK 41870.3 0 90217.9 OK +XLOC_000050 - - XLOC_000050 Xkr4 TSS59 chr1:3280117-3280144 - - 0 0 0 OK 0 0 0 OK +XLOC_000051 - - XLOC_000051 Xkr4 TSS60 chr1:3280498-3280525 - - 0 0 0 OK 0 0 0 OK +XLOC_000052 - - XLOC_000052 Xkr4 TSS61 chr1:3280686-3280741 - - 0 0 0 OK 2.29576e+07 0 6.88728e+07 OK +XLOC_000053 - - XLOC_000053 Xkr4 TSS62 chr1:3282504-3282531 - - 0 0 0 OK 0 0 0 OK +XLOC_000054 - - XLOC_000054 Xkr4 TSS63 chr1:3282650-3282677 - - 0 0 0 OK 0 0 0 OK +XLOC_000055 - - XLOC_000055 Xkr4 TSS64 chr1:3282760-3282832 - - 0 0 0 OK 0 0 0 OK +XLOC_000056 - - XLOC_000056 Xkr4 TSS65 chr1:3284966-3284993 - - 0 0 0 OK 0 0 0 OK +XLOC_000057 - - XLOC_000057 Xkr4 TSS66 chr1:3290488-3290553 - - 0 0 0 OK 9.79535e+06 0 2.9386e+07 OK +XLOC_000058 - - XLOC_000058 Xkr4 TSS67 chr1:3290798-3290859 - - 1.8095e+07 0 5.4285e+07 OK 0 0 0 OK +XLOC_000059 - - XLOC_000059 Xkr4 TSS68 chr1:3290919-3291273 - - 342218 0 691214 OK 75524 0 162732 OK +XLOC_000060 - - XLOC_000060 Xkr4 TSS70,TSS71 chr1:3299443-3299664 - - 937403 0 1.99795e+06 OK 137917 0 413751 OK +XLOC_000061 - - XLOC_000061 Xkr4 TSS72 chr1:3299691-3299733 - - 0 0 0 OK 0 0 0 OK +XLOC_000062 - - XLOC_000062 Xkr4 TSS73 chr1:3300051-3300078 - - 0 0 0 OK 0 0 0 OK +XLOC_000063 - - XLOC_000063 Xkr4 TSS74 chr1:3307748-3307775 - - 0 0 0 OK 0 0 0 OK +XLOC_000064 - - XLOC_000064 Xkr4 TSS75 chr1:3318620-3318647 - - 0 0 0 OK 0 0 0 OK +XLOC_000065 - - XLOC_000065 Xkr4 TSS76 chr1:3318999-3319051 - - 0 0 0 OK 0 0 0 OK +XLOC_000066 - - XLOC_000066 Xkr4 TSS77 chr1:3330527-3330554 - - 0 0 0 OK 0 0 0 OK +XLOC_000067 - - XLOC_000067 Xkr4 TSS78 chr1:3351240-3351311 - - 8.91489e+06 0 2.67447e+07 OK 0 0 0 OK +XLOC_000068 - - XLOC_000068 Xkr4 TSS79,TSS80 chr1:3355887-3356119 - - 585828 0 1.30332e+06 OK 0 0 0 OK +XLOC_000069 - - XLOC_000069 Xkr4 TSS81 chr1:3356180-3356225 - - 1.19208e+08 0 3.57623e+08 OK 0 0 0 OK +XLOC_000070 - - XLOC_000070 Xkr4 TSS82 chr1:3363076-3363176 - - 4.42166e+06 0 1.06748e+07 OK 0 0 0 OK +XLOC_000071 - - XLOC_000071 Xkr4 TSS83 chr1:3363214-3363278 - - 0 0 0 OK 0 0 0 OK +XLOC_000072 - - XLOC_000072 Xkr4 TSS84 chr1:3363387-3363446 - - 4.28358e+07 0 1.03415e+08 OK 0 0 0 OK +XLOC_000073 - - XLOC_000073 Xkr4 TSS85 chr1:3363753-3363849 - - 0 0 0 OK 0 0 0 OK +XLOC_000074 - - XLOC_000074 Xkr4 TSS86 chr1:3364871-3364919 - - 7.29939e+07 0 2.18982e+08 OK 0 0 0 OK +XLOC_000075 - - XLOC_000075 Xkr4 TSS87 chr1:3367135-3367162 - - 0 0 0 OK 0 0 0 OK +XLOC_000076 - - XLOC_000076 Xkr4 TSS88 chr1:3367210-3367237 - - 0 0 0 OK 0 0 0 OK +XLOC_000077 - - XLOC_000077 Xkr4 TSS89 chr1:3367333-3367382 - - 0 0 0 OK 0 0 0 OK +XLOC_000078 - - XLOC_000078 Xkr4 TSS90 chr1:3369580-3369607 - - 0 0 0 OK 0 0 0 OK +XLOC_000079 - - XLOC_000079 Xkr4 TSS91 chr1:3375001-3375028 - - 0 0 0 OK 0 0 0 OK +XLOC_000080 - - XLOC_000080 Xkr4 TSS92 chr1:3377211-3377262 - - 0 0 0 OK 0 0 0 OK +XLOC_000081 - - XLOC_000081 Xkr4 TSS93 chr1:3379888-3379915 - - 0 0 0 OK 0 0 0 OK +XLOC_000082 - - XLOC_000082 Xkr4 TSS94 chr1:3386739-3386836 - - 0 0 0 OK 0 0 0 OK +XLOC_000083 - - XLOC_000083 Xkr4 TSS95 chr1:3391325-3391352 - - 0 0 0 OK 0 0 0 OK +XLOC_000084 - - XLOC_000084 Xkr4 TSS96 chr1:3435841-3435880 - - 0 0 0 OK 0 0 0 OK +XLOC_000085 - - XLOC_000085 Xkr4 TSS97 chr1:3447761-3447788 - - 0 0 0 OK 0 0 0 OK +XLOC_000086 - - XLOC_000086 Xkr4 TSS98 chr1:3450906-3450965 - - 0 0 0 OK 0 0 0 OK +XLOC_000087 - - XLOC_000087 Xkr4 TSS99 chr1:3451051-3451109 - - 0 0 0 OK 0 0 0 OK
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out7.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,89 @@ +tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage q1_FPKM q1_conf_lo q1_conf_hi q1_status q2_FPKM q2_conf_lo q2_conf_hi q2_status +TSS1 - - XLOC_000001 Xkr4 TSS1 chr1:3204754-3204833 - - 0 0 0 OK 5.42247e+06 0 1.83844e+07 OK +TSS10 - - XLOC_000008 - TSS10 chr1:3190858-3191434 - - 227564 0 483427 OK 240951 0 505030 OK +TSS11 - - XLOC_000009 - TSS11 chr1:3191512-3192077 - - 241366 0 509259 OK 482731 109420 856042 OK +TSS13 - - XLOC_000010 - TSS13 chr1:3192250-3192336 - - 1.91712e+06 0 7.66198e+06 OK 1.91712e+06 0 7.66198e+06 OK +TSS14 - - XLOC_000011 - TSS14 chr1:3192441-3192494 - - 0 0 0 OK 5.56023e+07 0 1.86077e+08 OK +TSS15 - - XLOC_000012 - TSS15 chr1:3192550-3192629 - - 0 0 0 OK 2.71123e+06 0 1.08357e+07 OK +TSS16 - - XLOC_000013 - TSS16 chr1:3192649-3192676 - - 0 0 0 OK 0 0 0 OK +TSS17 - - XLOC_000014 - TSS17 chr1:3192731-3192811 - - 0 0 0 OK 0 0 0 OK +TSS18 - - XLOC_000015 - TSS18 chr1:3192940-3193042 - - 0 0 0 OK 3.93442e+06 0 1.25021e+07 OK +TSS19 - - XLOC_000016 - TSS19 chr1:3194185-3194226 - - 0 0 0 OK 1.39654e+08 0 5.58144e+08 OK +TSS2 - - XLOC_000002 - TSS2 chr1:3111449-3111490 - - 0 0 0 OK 1.39654e+08 0 5.58144e+08 OK +TSS20 - - XLOC_000017 - TSS20 chr1:3194302-3194329 - - 0 0 0 OK 0 0 0 OK +TSS21 - - XLOC_000018 - TSS21 chr1:3194706-3194733 - - 0 0 0 OK 0 0 0 OK +TSS22 - - XLOC_000019 - TSS22 chr1:3195083-3195110 - - 0 0 0 OK 0 0 0 OK +TSS23 - - XLOC_000020 - TSS23 chr1:3195450-3195477 - - 0 0 0 OK 0 0 0 OK +TSS24 - - XLOC_000021 - TSS24 chr1:3197089-3197116 - - 0 0 0 OK 0 0 0 OK +TSS25 - - XLOC_000022 - TSS25 chr1:3197246-3197273 - - 0 0 0 OK 0 0 0 OK +TSS26 - - XLOC_000023 - TSS26 chr1:3197346-3197373 - - 0 0 0 OK 0 0 0 OK +TSS27 - - XLOC_000024 - TSS27 chr1:3197425-3197452 - - 0 0 0 OK 0 0 0 OK +TSS28 - - XLOC_000025 - TSS28 chr1:3200022-3200191 - - 460348 0 1.54058e+06 OK 460348 0 1.54058e+06 OK +TSS29 - - XLOC_000026 - TSS29 chr1:3200325-3200352 - - 0 0 0 OK 0 0 0 OK +TSS3 - - XLOC_000003 - TSS3 chr1:3111545-3111576 - - 0 0 0 OK 0 0 0 OK +TSS30 - - XLOC_000027 - TSS30 chr1:3200430-3200457 - - 0 0 0 OK 0 0 0 OK +TSS31 - - XLOC_000028 - TSS31 chr1:3201007-3201039 - - 0 0 0 OK 0 0 0 OK +TSS32 - - XLOC_000029 - TSS32 chr1:3201077-3201481 - - 37206.6 0 124514 OK 186033 0 476912 OK +TSS33 - - XLOC_000030 - TSS33 chr1:3201596-3201666 - - 9.11292e+06 0 3.08965e+07 OK 0 0 0 OK +TSS34 - - XLOC_000031 - TSS34 chr1:3201672-3201699 - - 0 0 0 OK 0 0 0 OK +TSS35 - - XLOC_000032 - TSS35 chr1:3201725-3201809 - - 8.43162e+06 0 2.67925e+07 OK 0 0 0 OK +TSS36 - - XLOC_000033 Xkr4 TSS36 chr1:3211521-3211561 - - 0 0 0 OK 0 0 0 OK +TSS37 - - XLOC_000034 Xkr4 TSS37 chr1:3212213-3212292 - - 0 0 0 OK 5.42247e+06 0 1.83844e+07 OK +TSS38 - - XLOC_000035 Xkr4 TSS38 chr1:3212367-3212439 - - 0 0 0 OK 1.60978e+07 0 5.11527e+07 OK +TSS39 - - XLOC_000036 Xkr4 TSS39 chr1:3212717-3212801 - - 2.10791e+06 0 8.42447e+06 OK 0 0 0 OK +TSS4 - - XLOC_000004 - TSS4 chr1:3174765-3174792 - - 0 0 0 OK 0 0 0 OK +TSS40 - - XLOC_000037 Xkr4 TSS40 chr1:3213095-3213242 - - 2.84535e+06 0 1.07397e+07 OK 1.19347e+06 0 5.96736e+06 OK +TSS41 - - XLOC_000038 Xkr4 TSS41 chr1:3240606-3240633 - - 0 0 0 OK 0 0 0 OK +TSS42 - - XLOC_000039 Xkr4 TSS42 chr1:3242479-3242512 - - 0 0 0 OK 0 0 0 OK +TSS43 - - XLOC_000040 Xkr4 TSS43 chr1:3242633-3242923 - - 27029.9 0 108028 OK 243269 0 681799 OK +TSS44 - - XLOC_000041 Xkr4 TSS44 chr1:3242924-3243005 - - 0 0 0 OK 0 0 0 OK +TSS45 - - XLOC_000042 Xkr4 TSS45 chr1:3243018-3243079 - - 0 0 0 OK 1.73712e+07 0 5.88955e+07 OK +TSS46 - - XLOC_000043 Xkr4 TSS46 chr1:3243108-3243154 - - 4.79961e+07 0 1.91822e+08 OK 0 0 0 OK +TSS47 - - XLOC_000044 Xkr4 TSS47 chr1:3243347-3243401 - - 0 0 0 OK 3.32455e+07 0 1.12716e+08 OK +TSS48 - - XLOC_000045 Xkr4 TSS48 chr1:3254079-3254106 - - 0 0 0 OK 0 0 0 OK +TSS49 - - XLOC_000046 Xkr4 TSS49 chr1:3256974-3257011 - - 0 0 0 OK 1.34946e+09 0 4.57522e+09 OK +TSS5 - - XLOC_000005 - TSS5 chr1:3187401-3187428 - - 0 0 0 OK 0 0 0 OK +TSS50 - - XLOC_000047 Xkr4 TSS50 chr1:3277155-3277182 - - 0 0 0 OK 0 0 0 OK +TSS51 - - XLOC_000048 Xkr4 TSS51 chr1:3277190-3277218 - - 0 0 0 OK 0 0 0 OK +TSS52 - - XLOC_000049 Xkr4 TSS52 chr1:3277913-3278390 - - 127495 0 331348 OK 27320.3 0 91429.2 OK +TSS54 - - XLOC_000050 Xkr4 TSS54 chr1:3280117-3280144 - - 0 0 0 OK 0 0 0 OK +TSS55 - - XLOC_000051 Xkr4 TSS55 chr1:3280498-3280525 - - 0 0 0 OK 0 0 0 OK +TSS56 - - XLOC_000052 Xkr4 TSS56 chr1:3280686-3280741 - - 0 0 0 OK 1.49798e+07 0 5.98686e+07 OK +TSS57 - - XLOC_000053 Xkr4 TSS57 chr1:3282504-3282531 - - 0 0 0 OK 0 0 0 OK +TSS58 - - XLOC_000054 Xkr4 TSS58 chr1:3282650-3282677 - - 0 0 0 OK 0 0 0 OK +TSS59 - - XLOC_000055 Xkr4 TSS59 chr1:3282760-3282832 - - 0 0 0 OK 0 0 0 OK +TSS6 - - XLOC_000006 - TSS6 chr1:3188521-3188548 - - 0 0 0 OK 0 0 0 OK +TSS60 - - XLOC_000056 Xkr4 TSS60 chr1:3284966-3284993 - - 0 0 0 OK 0 0 0 OK +TSS61 - - XLOC_000057 Xkr4 TSS61 chr1:3290488-3290553 - - 0 0 0 OK 6.39146e+06 0 2.55442e+07 OK +TSS62 - - XLOC_000058 Xkr4 TSS62 chr1:3290798-3290859 - - 8.68561e+06 0 3.4713e+07 OK 0 0 0 OK +TSS63 - - XLOC_000059 Xkr4 TSS63 chr1:3290919-3291273 - - 164265 0 453103 OK 49279.4 0 164917 OK +TSS65 - - XLOC_000060 Xkr4 TSS65 chr1:3299443-3299664 - - 449954 0 1.56567e+06 OK 89990.7 0 449954 OK +TSS66 - - XLOC_000060 Xkr4 TSS66 chr1:3299443-3299664 - - 0 0 0 OK 0 0 0 OK +TSS67 - - XLOC_000061 Xkr4 TSS67 chr1:3299691-3299733 - - 0 0 0 OK 0 0 0 OK +TSS68 - - XLOC_000062 Xkr4 TSS68 chr1:3300051-3300078 - - 0 0 0 OK 0 0 0 OK +TSS69 - - XLOC_000063 Xkr4 TSS69 chr1:3307748-3307775 - - 0 0 0 OK 0 0 0 OK +TSS7 - - XLOC_000007 - TSS7 chr1:3189810-3190789 - - 199608 33901.5 365315 OK 299412 183619 415206 OK +TSS70 - - XLOC_000064 Xkr4 TSS70 chr1:3318620-3318647 - - 0 0 0 OK 0 0 0 OK +TSS71 - - XLOC_000065 Xkr4 TSS71 chr1:3318999-3319051 - - 0 0 0 OK 0 0 0 OK +TSS72 - - XLOC_000066 Xkr4 TSS72 chr1:3330527-3330554 - - 0 0 0 OK 0 0 0 OK +TSS73 - - XLOC_000067 Xkr4 TSS73 chr1:3351240-3351311 - - 4.27915e+06 0 1.71021e+07 OK 0 0 0 OK +TSS74 - - XLOC_000068 Xkr4 TSS74 chr1:3355887-3356119 - - 281197 0 1.06014e+06 OK 0 0 0 OK +TSS75 - - XLOC_000069 Xkr4 TSS75 chr1:3356180-3356225 - - 5.72196e+07 0 2.28684e+08 OK 0 0 0 OK +TSS76 - - XLOC_000070 Xkr4 TSS76 chr1:3363076-3363176 - - 2.1224e+06 0 7.19579e+06 OK 0 0 0 OK +TSS77 - - XLOC_000071 Xkr4 TSS77 chr1:3363214-3363278 - - 0 0 0 OK 0 0 0 OK +TSS78 - - XLOC_000072 Xkr4 TSS78 chr1:3363387-3363446 - - 3.08417e+07 0 1.03214e+08 OK 0 0 0 OK +TSS79 - - XLOC_000073 Xkr4 TSS79 chr1:3363753-3363849 - - 0 0 0 OK 0 0 0 OK +TSS80 - - XLOC_000074 Xkr4 TSS80 chr1:3364871-3364919 - - 3.50371e+07 0 1.40029e+08 OK 0 0 0 OK +TSS81 - - XLOC_000075 Xkr4 TSS81 chr1:3367135-3367162 - - 0 0 0 OK 0 0 0 OK +TSS82 - - XLOC_000076 Xkr4 TSS82 chr1:3367210-3367237 - - 0 0 0 OK 0 0 0 OK +TSS83 - - XLOC_000077 Xkr4 TSS83 chr1:3367333-3367382 - - 0 0 0 OK 0 0 0 OK +TSS84 - - XLOC_000078 Xkr4 TSS84 chr1:3369580-3369607 - - 0 0 0 OK 0 0 0 OK +TSS85 - - XLOC_000079 Xkr4 TSS85 chr1:3375001-3375028 - - 0 0 0 OK 0 0 0 OK +TSS86 - - XLOC_000080 Xkr4 TSS86 chr1:3377211-3377262 - - 0 0 0 OK 0 0 0 OK +TSS87 - - XLOC_000081 Xkr4 TSS87 chr1:3379888-3379915 - - 0 0 0 OK 0 0 0 OK +TSS88 - - XLOC_000082 Xkr4 TSS88 chr1:3386739-3386836 - - 0 0 0 OK 0 0 0 OK +TSS89 - - XLOC_000083 Xkr4 TSS89 chr1:3391325-3391352 - - 0 0 0 OK 0 0 0 OK +TSS90 - - XLOC_000084 Xkr4 TSS90 chr1:3435841-3435880 - - 0 0 0 OK 0 0 0 OK +TSS91 - - XLOC_000085 Xkr4 TSS91 chr1:3447761-3447788 - - 0 0 0 OK 0 0 0 OK +TSS92 - - XLOC_000086 Xkr4 TSS92 chr1:3450906-3450965 - - 0 0 0 OK 0 0 0 OK +TSS93 - - XLOC_000087 Xkr4 TSS93 chr1:3451051-3451109 - - 0 0 0 OK 0 0 0 OK
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out8.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,1 @@ +tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffdiff_out9.txt Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,89 @@ +test_id gene_id gene locus sample_1 sample_2 status value_1 value_2 sqrt(JS) test_stat p_value q_value significant +TSS1 XLOC_000001 Xkr4 chr1:3204754-3204833 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS10 XLOC_000008 - chr1:3190858-3191434 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS11 XLOC_000009 - chr1:3191512-3192077 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS13 XLOC_000010 - chr1:3192250-3192336 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS14 XLOC_000011 - chr1:3192441-3192494 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS15 XLOC_000012 - chr1:3192550-3192629 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS16 XLOC_000013 - chr1:3192649-3192676 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS17 XLOC_000014 - chr1:3192731-3192811 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS18 XLOC_000015 - chr1:3192940-3193042 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS19 XLOC_000016 - chr1:3194185-3194226 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS2 XLOC_000002 - chr1:3111449-3111490 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS20 XLOC_000017 - chr1:3194302-3194329 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS21 XLOC_000018 - chr1:3194706-3194733 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS22 XLOC_000019 - chr1:3195083-3195110 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS23 XLOC_000020 - chr1:3195450-3195477 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS24 XLOC_000021 - chr1:3197089-3197116 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS25 XLOC_000022 - chr1:3197246-3197273 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS26 XLOC_000023 - chr1:3197346-3197373 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS27 XLOC_000024 - chr1:3197425-3197452 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS28 XLOC_000025 - chr1:3200022-3200191 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS29 XLOC_000026 - chr1:3200325-3200352 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS3 XLOC_000003 - chr1:3111545-3111576 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS30 XLOC_000027 - chr1:3200430-3200457 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS31 XLOC_000028 - chr1:3201007-3201039 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS32 XLOC_000029 - chr1:3201077-3201481 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS33 XLOC_000030 - chr1:3201596-3201666 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS34 XLOC_000031 - chr1:3201672-3201699 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS35 XLOC_000032 - chr1:3201725-3201809 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS36 XLOC_000033 Xkr4 chr1:3211521-3211561 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS37 XLOC_000034 Xkr4 chr1:3212213-3212292 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS38 XLOC_000035 Xkr4 chr1:3212367-3212439 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS39 XLOC_000036 Xkr4 chr1:3212717-3212801 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS4 XLOC_000004 - chr1:3174765-3174792 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS40 XLOC_000037 Xkr4 chr1:3213095-3213242 q1 q2 NOTEST 0 0 0.249947 0 0.557805 1 no +TSS41 XLOC_000038 Xkr4 chr1:3240606-3240633 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS42 XLOC_000039 Xkr4 chr1:3242479-3242512 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS43 XLOC_000040 Xkr4 chr1:3242633-3242923 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS44 XLOC_000041 Xkr4 chr1:3242924-3243005 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS45 XLOC_000042 Xkr4 chr1:3243018-3243079 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS46 XLOC_000043 Xkr4 chr1:3243108-3243154 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS47 XLOC_000044 Xkr4 chr1:3243347-3243401 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS48 XLOC_000045 Xkr4 chr1:3254079-3254106 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS49 XLOC_000046 Xkr4 chr1:3256974-3257011 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS5 XLOC_000005 - chr1:3187401-3187428 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS50 XLOC_000047 Xkr4 chr1:3277155-3277182 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS51 XLOC_000048 Xkr4 chr1:3277190-3277218 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS52 XLOC_000049 Xkr4 chr1:3277913-3278390 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS54 XLOC_000050 Xkr4 chr1:3280117-3280144 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS55 XLOC_000051 Xkr4 chr1:3280498-3280525 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS56 XLOC_000052 Xkr4 chr1:3280686-3280741 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS57 XLOC_000053 Xkr4 chr1:3282504-3282531 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS58 XLOC_000054 Xkr4 chr1:3282650-3282677 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS59 XLOC_000055 Xkr4 chr1:3282760-3282832 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS6 XLOC_000006 - chr1:3188521-3188548 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS60 XLOC_000056 Xkr4 chr1:3284966-3284993 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS61 XLOC_000057 Xkr4 chr1:3290488-3290553 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS62 XLOC_000058 Xkr4 chr1:3290798-3290859 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS63 XLOC_000059 Xkr4 chr1:3290919-3291273 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS65 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS66 XLOC_000060 Xkr4 chr1:3299443-3299664 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS67 XLOC_000061 Xkr4 chr1:3299691-3299733 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS68 XLOC_000062 Xkr4 chr1:3300051-3300078 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS69 XLOC_000063 Xkr4 chr1:3307748-3307775 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS7 XLOC_000007 - chr1:3189810-3190789 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS70 XLOC_000064 Xkr4 chr1:3318620-3318647 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS71 XLOC_000065 Xkr4 chr1:3318999-3319051 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS72 XLOC_000066 Xkr4 chr1:3330527-3330554 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS73 XLOC_000067 Xkr4 chr1:3351240-3351311 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS74 XLOC_000068 Xkr4 chr1:3355887-3356119 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS75 XLOC_000069 Xkr4 chr1:3356180-3356225 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS76 XLOC_000070 Xkr4 chr1:3363076-3363176 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS77 XLOC_000071 Xkr4 chr1:3363214-3363278 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS78 XLOC_000072 Xkr4 chr1:3363387-3363446 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS79 XLOC_000073 Xkr4 chr1:3363753-3363849 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS80 XLOC_000074 Xkr4 chr1:3364871-3364919 q1 q2 NOTEST 0 0 0 0 1 1 no +TSS81 XLOC_000075 Xkr4 chr1:3367135-3367162 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS82 XLOC_000076 Xkr4 chr1:3367210-3367237 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS83 XLOC_000077 Xkr4 chr1:3367333-3367382 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS84 XLOC_000078 Xkr4 chr1:3369580-3369607 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS85 XLOC_000079 Xkr4 chr1:3375001-3375028 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS86 XLOC_000080 Xkr4 chr1:3377211-3377262 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS87 XLOC_000081 Xkr4 chr1:3379888-3379915 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS88 XLOC_000082 Xkr4 chr1:3386739-3386836 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS89 XLOC_000083 Xkr4 chr1:3391325-3391352 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS90 XLOC_000084 Xkr4 chr1:3435841-3435880 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS91 XLOC_000085 Xkr4 chr1:3447761-3447788 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS92 XLOC_000086 Xkr4 chr1:3450906-3450965 q1 q2 LOWDATA 0 0 0 0 0 1 no +TSS93 XLOC_000087 Xkr4 chr1:3451051-3451109 q1 q2 LOWDATA 0 0 0 0 0 1 no
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/sam_fa_indices.loc.sample Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,28 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of Samtools indexed sequences data files. You will need +#to create these data files and then create a sam_fa_indices.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The sam_fa_indices.loc +#file has this format (white space characters are TAB characters): +# +#index <seq> <location> +# +#So, for example, if you had hg18 indexed stored in +#/depot/data2/galaxy/sam/, +#then the sam_fa_indices.loc entry would look like this: +# +#index hg18 /depot/data2/galaxy/sam/hg18.fa +# +#and your /depot/data2/galaxy/sam/ directory +#would contain hg18.fa and hg18.fa.fai files: +# +#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.fa +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg18.fa.fai +# +#Your sam_fa_indices.loc file should include an entry per line for +#each index set you have stored. The file in the path does actually +#exist, but it should never be directly used. Instead, the name serves +#as a prefix for the index file. For example: +# +#index hg18 /depot/data2/galaxy/sam/hg18.fa +#index hg19 /depot/data2/galaxy/sam/hg19.fa
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Nov 08 13:28:44 2013 -0600 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="cufflinks" version="2.1.1"> + <repository changeset_revision="1b08f4e80509" name="package_cufflinks_2_1_1" owner="devteam" toolshed="http://http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>