Mercurial > repos > jjohnson > cummerbund

diff cuffdiff_wrapper.xml @ 13:4597c429b6fb

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Return nonzero exit code from cuffdiff_wrapper.py on error
author Jim Johnson <jj@umn.edu>
date Wed, 17 Jul 2013 07:58:39 -0500
parents 56bdf6d4ac9c
children d10befb0867a
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--- a/cuffdiff_wrapper.xml	Sun Oct 21 18:17:51 2012 -0500
+++ b/cuffdiff_wrapper.xml	Wed Jul 17 07:58:39 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="cuffdiff" name="Cuffdiff" version="0.0.6">
+<tool id="cuffdiff_cummerbund" name="Cuffdiff" version="0.0.6">
     <!-- Wrapper supports Cuffdiff versions v1.3.0-v2.0 -->
     <description>find significant changes in transcript expression, splicing, and promoter use</description>
     <requirements>
@@ -114,7 +114,7 @@
 
     </command>
     <inputs>
-        <param format="gtf,gff3" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/>
+        <param format="gtf,gff3" name="gtf_input" type="data" label="Transcripts" help="A transcript GFF3 or GTF file produced by cufflinks, cuffcompare, or other source."/>
         <conditional name="group_analysis"> 
             <param name="do_groups" type="select" label="Perform replicate analysis" help="Perform cuffdiff with replicates in each group.">
                 <option value="No">No</option>