comparison cuffdata.py @ 5:9d25b0fd882b

Add cuffdatadb datatype (cummeRbund SQLite DB) to cuffdata.py

4:77ca14d2bb3d

"""
import logging
import os,os.path,re
import galaxy.datatypes.data
from galaxy.datatypes.images import Html
from galaxy import util
from galaxy.datatypes.metadata import MetadataElement

log = logging.getLogger(__name__)

    tss_groups.count_tracking
    tss_groups.fpkm_tracking
    tss_groups.read_group_tracking
    """
    file_ext = 'cuffdata'
    is_binary = True
    composite_type = 'auto_primary_file'
    allow_datatype_change = False

    def generate_primary_file( self, dataset = None ):
        """ 

        self.regenerate_primary_file(dataset)

    def sniff( self, filename ):
        return False

5:9d25b0fd882b

"""
import logging
import os,os.path,re
import galaxy.datatypes.data
from galaxy.datatypes.images import Html
from galaxy.datatypes.binary import Binary
from galaxy import util
from galaxy.datatypes.metadata import MetadataElement

log = logging.getLogger(__name__)

    tss_groups.count_tracking
    tss_groups.fpkm_tracking
    tss_groups.read_group_tracking
    """
    file_ext = 'cuffdata'
    is_binary = False
    composite_type = 'auto_primary_file'
    allow_datatype_change = False

    def generate_primary_file( self, dataset = None ):
        """ 

        self.regenerate_primary_file(dataset)

    def sniff( self, filename ):
        return False

class CuffDataDB( Binary ):
    file_ext = 'cuffdata'
    is_binary = True
    allow_datatype_change = False