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annotate cuffdiff_mds_plot.xml @ 15:2d7eee38ab5b

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Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
author Jim Johnson <jj@umn.edu>
date Fri, 08 Nov 2013 13:28:44 -0600
parents 77ca14d2bb3d
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1 <tool id="cuffdiff_mds_plot" name="Cuffdiff MDS Plot" version="1.0">
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2 <description>MultiDimensional Scaling (MDS) plot from cuffdiff read_group_tracking</description>
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3 <command interpreter="perl">
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4 cuffdiff_mds_plot.pl $input data.tmp $plot
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5 </command>
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6 <inputs>
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7 <param format="tabular" name="input" type="data" label="A cuffdiff2 tracking file"
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8 help="any of the *.read_group_tracking files produced by cuffdiff2"/>
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9 </inputs>
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10 <outputs>
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11 <data format="png" name="plot" label="${tool.name} on ${on_string}"/>
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12 </outputs>
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13 <tests>
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14 <test>
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15 </test>
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16 </tests>
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17 <help>
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18 Generates a multidimensional scaling (MDS) plot of a read_group_tracking output file from cuffdiff ver2.
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19 </help>
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20 </tool>