Mercurial > repos > jjohnson > cistrome_beta
comparison beta_basic.xml @ 4:52ed4957ace9 draft
planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/cistrome_beta commit c7ec1c7f1eb5f67fcd76e365b3cd0b35ef3509e6-dirty
| author | jjohnson |
|---|---|
| date | Thu, 22 Mar 2018 10:48:43 -0400 |
| parents | 067573bac905 |
| children |
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| 3:067573bac905 | 4:52ed4957ace9 |
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| 8 <command><![CDATA[ | 8 <command><![CDATA[ |
| 9 BETA basic | 9 BETA basic |
| 10 #include source=$common_opts# | 10 #include source=$common_opts# |
| 11 #include source=$genome_opts# | 11 #include source=$genome_opts# |
| 12 #include source=$extended_opts# | 12 #include source=$extended_opts# |
| 13 &> $log | 13 #include source=$write_log# |
| 14 ]]></command> | 14 ]]></command> |
| 15 <inputs> | 15 <inputs> |
| 16 <expand macro="common_params" /> | 16 <expand macro="common_params" /> |
| 17 <expand macro="genome_params" /> | 17 <expand macro="genome_params" /> |
| 18 <expand macro="extended_params" /> | 18 <expand macro="extended_params" /> |
| 43 <has_text_matching expression="Finished" /> | 43 <has_text_matching expression="Finished" /> |
| 44 </assert_contents> | 44 </assert_contents> |
| 45 </output> | 45 </output> |
| 46 <output name="uptargetsoutput"> | 46 <output name="uptargetsoutput"> |
| 47 <assert_contents> | 47 <assert_contents> |
| 48 <has_text_matching expression="chr19\t4675243\t4723855\tNM_139159\t1.1.*\t-\tDPP" /> | 48 <has_text_matching expression="chr19\t47990890\t48018515\tNR_038457\t4.*\t-\tNAPA" /> |
| 49 </assert_contents> | 49 </assert_contents> |
| 50 </output> | 50 </output> |
| 51 <output name="uptargetpeaks"> | 51 <output name="uptargetpeaks"> |
| 52 <assert_contents> | 52 <assert_contents> |
| 53 <has_text_matching expression="chr19\t4723422\t4724314\tregion_9\tNM_139159\tDPP9\t13\t0.6.*" /> | 53 <has_text_matching expression="chr19\t47950633\t47951639\tNR_038457\tNAPA\t-67379\t0.04\d+" /> |
| 54 </assert_contents> | 54 </assert_contents> |
| 55 </output> | 55 </output> |
| 56 </test> | 56 </test> |
| 57 </tests> | 57 </tests> |
| 58 <help><![CDATA[ | 58 <help><![CDATA[ |