# HG changeset patch # User Jim Johnson <jj@umn.edu> # Date 1347584061 18000 # Node ID 55e57243b131708458b5f5dd072e05233daa019c # Parent 438677e99ef82ae7665ee52ec45452eb35074901 Add install PREFIX to make install command in tool_dependencies.xml diff -r 438677e99ef8 -r 55e57243b131 tool_dependencies.xml --- a/tool_dependencies.xml Thu Sep 13 15:58:08 2012 -0500 +++ b/tool_dependencies.xml Thu Sep 13 19:54:21 2012 -0500 @@ -5,7 +5,11 @@ <actions> <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> <action type="shell_command">mkdir -p $INSTALL_DIR/bin/</action> - <action type="shell_command">make openmp=yes PREFIX=$INSTALL_DIR/bin/ install</action> + <action type="shell_command">pwd</action> + <action type="shell_command">ls</action> + <action type="shell_command">cd cd-hit-v4.6.1-2012-08-27</action> + <action type="shell_command">make openmp=yes</action> + <action type="shell_command">make PREFIX=$INSTALL_DIR/bin/ install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action>