diff cd_hit_est.xml @ 3:22a3fc9a14d7

Add functional test

--- a/cd_hit_est.xml	Fri Sep 07 09:47:58 2012 -0500
+++ b/cd_hit_est.xml	Fri Sep 07 10:52:02 2012 -0500
@@ -28,6 +28,22 @@
   <data format="fasta" name="fasta_out" label="${tool.name} on ${on_string}: representatives.fasta" from_work_dir="rep_seq"/>
  </outputs>
  <tests>
+  <test>
+    <param name="fasta_in" value="cd_hit_est_in.fa" />
+    <param name="similarity" value="0.9"/>
+    <param name="wordsize" value="8"/>
+    <output name="clusters_out">
+        <assert_contents>
+            <has_text text=">Cluster" />
+            <has_text_matching expression=">F12Fcsw_481739" />
+        </assert_contents>
+    </output>
+    <output name="fasta_out">
+        <assert_contents>
+            <has_text_matching expression="^>[MF]\d\dFcsw_\d*" />
+        </assert_contents>
+    </output>
+  </test>
  </tests>
  <help>
 **CD-HIT-EST**